Wall clock time and date at job start Tue Mar 31 2020 12:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46626 * 269.99960 * 3 2 1 5 5 H 1.48493 * 109.47047 * 29.99531 * 3 2 1 6 6 H 1.48493 * 109.47384 * 149.99806 * 3 2 1 7 7 C 1.38632 * 120.00623 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99982 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99662 * 0.26981 * 7 2 1 10 10 C 1.35778 * 116.99946 * 174.68657 * 9 7 2 11 11 C 1.38912 * 120.00197 * 185.07171 * 10 9 7 12 12 C 1.37999 * 120.00231 * 179.72920 * 11 10 9 13 13 C 1.38918 * 120.00184 * 0.57223 * 12 11 10 14 14 N 1.40019 * 120.00118 * 179.67945 * 13 12 11 15 15 C 1.34778 * 120.00348 * 35.15059 * 14 13 12 16 16 O 1.21586 * 119.99499 * 355.49251 * 15 14 13 17 17 N 1.34770 * 120.00053 * 175.48740 * 15 14 13 18 18 C 1.46498 * 120.00022 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.34372 * 34.29860 * 18 17 15 20 20 C 1.51104 * 110.38990 * 272.01595 * 18 17 15 21 21 C 1.30802 * 110.94895 * 257.62207 * 20 18 17 22 22 C 1.51107 * 111.14829 * 359.95018 * 21 20 18 23 23 H 1.09001 * 110.38705 * 224.78319 * 22 21 20 24 24 C 1.53002 * 110.38842 * 102.40604 * 22 21 20 25 25 O 1.42897 * 109.47236 * 69.69534 * 24 22 21 26 26 C 1.54633 * 110.39103 * 156.59090 * 18 17 15 27 27 C 1.38912 * 119.99298 * 359.70395 * 13 12 11 28 28 C 1.38011 * 120.00141 * 359.97438 * 27 13 12 29 29 H 0.96998 * 120.00438 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99253 * 359.97438 * 11 10 9 31 31 H 1.08003 * 120.00095 * 180.27430 * 12 11 10 32 32 H 0.96998 * 120.00033 * 215.14244 * 14 13 12 33 33 H 0.97004 * 120.00074 * 0.02562 * 17 15 14 34 34 H 1.08004 * 124.44850 * 77.58034 * 20 18 17 35 35 H 1.07991 * 124.40630 * 179.97438 * 21 20 18 36 36 H 1.09002 * 109.47016 * 189.69645 * 24 22 21 37 37 H 1.09005 * 109.46836 * 309.69346 * 24 22 21 38 38 H 0.96696 * 113.99825 * 179.97438 * 25 24 22 39 39 H 1.09003 * 111.03882 * 212.21333 * 26 18 17 40 40 H 1.09004 * 111.03377 * 336.10815 * 26 18 17 41 41 H 1.08002 * 119.99735 * 179.97438 * 27 13 12 42 42 H 1.08003 * 119.99785 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5471 1.4404 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0010 9 8 1.3350 -2.3680 -0.0044 10 6 2.0705 -3.5039 -0.1156 11 6 1.4356 -4.7338 -0.2334 12 6 2.1831 -5.8877 -0.3520 13 6 3.5706 -5.8206 -0.3418 14 7 4.3290 -6.9921 -0.4554 15 6 3.8937 -8.0042 -1.2317 16 8 2.8047 -7.9340 -1.7678 17 7 4.6654 -9.0940 -1.4137 18 6 4.1924 -10.1939 -2.2579 19 1 3.5969 -9.8076 -3.0851 20 6 3.3843 -11.1748 -1.4407 21 6 4.0891 -12.2396 -1.1571 22 6 5.4803 -12.1434 -1.7391 23 1 5.7593 -13.0843 -2.2135 24 6 6.4894 -11.7745 -0.6498 25 8 6.6453 -12.8755 0.2478 26 6 5.3884 -11.0153 -2.7927 27 6 4.2055 -4.5913 -0.2182 28 6 3.4579 -3.4366 -0.1063 29 1 -0.4851 0.8400 -0.0004 30 1 0.3569 -4.7865 -0.2361 31 1 1.6894 -6.8435 -0.4481 32 1 5.1679 -7.0753 0.0245 33 1 5.5341 -9.1501 -0.9856 34 1 2.3615 -11.0162 -1.1321 35 1 3.7240 -13.0778 -0.5824 36 1 7.4502 -11.5410 -1.1086 37 1 6.1287 -10.9054 -0.0996 38 1 7.2724 -12.7121 0.9654 39 1 5.1740 -11.4202 -3.7818 40 1 6.2993 -10.4168 -2.8063 41 1 5.2842 -4.5391 -0.2098 42 1 3.9515 -2.4808 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081507501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:20 Heat of formation + Delta-G solvation = -48.382701 kcal Electronic energy + Delta-G solvation = -25415.534812 eV Core-core repulsion = 21555.258055 eV Total energy + Delta-G solvation = -3860.276757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69413 -39.49444 -38.55794 -36.87318 -36.32768 -34.03878 -33.46448 -32.12705 -30.19066 -30.15670 -28.73156 -27.37823 -25.33315 -24.48637 -22.31127 -21.84321 -20.88305 -20.55183 -19.01978 -18.61440 -17.87921 -17.66298 -17.37070 -16.71983 -16.16839 -15.70958 -15.18891 -14.97959 -14.54050 -14.53029 -14.24815 -14.09915 -13.52146 -13.50331 -12.82636 -12.72294 -12.64929 -12.37396 -12.28741 -11.91516 -11.81038 -11.58848 -11.52839 -11.48333 -11.30432 -11.00730 -10.72860 -10.46899 -10.42701 -9.96435 -9.61960 -9.40202 -9.21345 -9.20067 -8.66731 -8.16150 -6.87964 -6.41500 -3.99669 1.81944 2.20267 2.29205 2.83830 3.13560 3.14944 3.19720 3.34330 3.66616 3.99075 4.12729 4.25148 4.36410 4.58540 4.61701 4.74506 4.87964 4.99893 5.12188 5.17699 5.22715 5.37675 5.40625 5.53501 5.56046 5.58883 5.79481 5.83812 6.16206 6.21164 6.25002 6.28834 6.38342 6.53918 6.72032 6.88161 6.95493 7.15203 7.15893 7.26104 7.29171 7.46755 7.84217 8.02770 8.06135 8.69517 9.03874 9.75206 10.76611 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035692 B = 0.002143 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.296783 B =13061.683511 C =13399.486104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.178 4.178 12 C -0.067 4.067 13 C 0.053 3.947 14 N -0.675 5.675 15 C 0.700 3.300 16 O -0.573 6.573 17 N -0.738 5.738 18 C 0.181 3.819 19 H 0.099 0.901 20 C -0.169 4.169 21 C -0.142 4.142 22 C -0.073 4.073 23 H 0.088 0.912 24 C 0.086 3.914 25 O -0.571 6.571 26 C -0.126 4.126 27 C -0.092 4.092 28 C -0.220 4.220 29 H 0.270 0.730 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.396 0.604 33 H 0.390 0.610 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.380 0.620 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.609 -22.113 -1.507 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.198 4.198 12 C -0.087 4.087 13 C -0.040 4.040 14 N -0.323 5.323 15 C 0.400 3.600 16 O -0.449 6.449 17 N -0.394 5.394 18 C 0.076 3.924 19 H 0.117 0.883 20 C -0.189 4.189 21 C -0.161 4.161 22 C -0.091 4.091 23 H 0.106 0.894 24 C 0.009 3.991 25 O -0.377 6.377 26 C -0.164 4.164 27 C -0.113 4.113 28 C -0.240 4.240 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.230 0.770 33 H 0.224 0.776 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.227 0.773 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.736 -22.086 -2.424 26.122 hybrid contribution 1.779 1.018 0.882 2.231 sum 15.515 -21.068 -1.542 26.210 Atomic orbital electron populations 1.70043 1.05932 1.27600 1.46194 1.25282 0.95838 0.98804 0.96671 0.85720 0.78873 0.80188 0.78670 1.19921 1.20307 1.19257 1.21302 0.91748 0.80908 1.52786 0.89124 1.83992 1.34205 1.11389 1.78540 1.19419 0.90240 0.88157 0.92992 1.20159 0.99726 0.89893 1.10046 1.20771 0.91880 0.98188 0.97835 1.17039 0.90451 0.83907 1.12557 1.42306 1.25622 1.15225 1.49101 1.15987 0.84389 0.79861 0.79718 1.90928 1.20575 1.80210 1.53177 1.45234 1.21273 1.18177 1.54763 1.20533 0.94053 0.85338 0.92438 0.88335 1.23771 0.99945 0.95153 1.00004 1.23262 0.94402 0.98870 0.99545 1.21042 0.93698 0.99825 0.94553 0.89359 1.22253 0.97357 0.88753 0.90775 1.86483 1.67649 1.40559 1.42981 1.22758 0.98491 0.96270 0.98862 1.20447 0.98323 0.90683 1.01844 1.20949 0.93680 0.98304 1.11050 0.92057 0.86177 0.85166 0.77014 0.77571 0.85383 0.85577 0.93358 0.93602 0.77334 0.88751 0.89855 0.87304 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.97 9.48 30.88 0.29 -10.68 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.14 9.76 0.02 0.00 -5.14 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 12 C -0.07 -1.35 8.69 -39.42 -0.34 -1.69 16 13 C 0.05 0.96 6.30 -83.62 -0.53 0.43 16 14 N -0.68 -9.28 5.34 -14.18 -0.08 -9.36 16 15 C 0.70 10.07 8.40 -86.92 -0.73 9.34 16 16 O -0.57 -10.71 13.45 5.29 0.07 -10.64 16 17 N -0.74 -7.23 5.08 -58.77 -0.30 -7.53 16 18 C 0.18 1.69 3.21 -68.03 -0.22 1.47 16 19 H 0.10 1.11 7.60 -51.93 -0.39 0.72 16 20 C -0.17 -1.63 10.43 -35.77 -0.37 -2.01 16 21 C -0.14 -1.18 9.98 -35.77 -0.36 -1.54 16 22 C -0.07 -0.49 3.18 -90.71 -0.29 -0.78 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 24 C 0.09 0.50 6.31 37.16 0.23 0.74 16 25 O -0.57 -3.90 13.54 -35.23 -0.48 -4.38 16 26 C -0.13 -0.78 6.31 -25.01 -0.16 -0.93 16 27 C -0.09 -1.67 9.96 -39.41 -0.39 -2.06 16 28 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.13 2.61 6.22 -52.48 -0.33 2.29 16 32 H 0.40 3.89 8.84 -40.82 -0.36 3.53 16 33 H 0.39 2.66 7.29 -40.82 -0.30 2.37 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.05 0.20 8.10 -51.93 -0.42 -0.22 16 37 H 0.05 0.26 6.83 -51.93 -0.35 -0.09 16 38 H 0.38 1.00 9.12 45.56 0.42 1.41 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.41 7.77 -51.93 -0.40 0.01 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.78 5.63 -52.48 -0.30 2.48 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -35.32 354.69 -8.05 -43.37 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.38 Total: 10.49 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.97 Total: -12.92 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.38 Total: -41.67 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.41 Total: -20.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.32 -8.05 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081507501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.014 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds