Wall clock time and date at job start Tue Mar 31 2020 12:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46626 * 269.99960 * 3 2 1 5 5 H 1.48493 * 109.47047 * 29.99531 * 3 2 1 6 6 H 1.48493 * 109.47384 * 149.99806 * 3 2 1 7 7 C 1.38632 * 120.00623 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99982 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99662 * 0.26981 * 7 2 1 10 10 C 1.35778 * 116.99946 * 174.68657 * 9 7 2 11 11 C 1.38912 * 120.00197 * 185.07171 * 10 9 7 12 12 C 1.37999 * 120.00231 * 179.72920 * 11 10 9 13 13 C 1.38918 * 120.00184 * 0.57223 * 12 11 10 14 14 N 1.40019 * 120.00118 * 179.67945 * 13 12 11 15 15 C 1.34778 * 120.00348 * 35.15059 * 14 13 12 16 16 O 1.21586 * 119.99499 * 355.49251 * 15 14 13 17 17 N 1.34770 * 120.00053 * 175.48740 * 15 14 13 18 18 C 1.46498 * 120.00022 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.34372 * 34.29860 * 18 17 15 20 20 C 1.51104 * 110.38990 * 272.01595 * 18 17 15 21 21 C 1.30802 * 110.94895 * 257.62207 * 20 18 17 22 22 C 1.51107 * 111.14829 * 359.95018 * 21 20 18 23 23 H 1.09001 * 110.38705 * 224.78319 * 22 21 20 24 24 C 1.53002 * 110.38842 * 102.40604 * 22 21 20 25 25 O 1.42897 * 109.47236 * 69.69534 * 24 22 21 26 26 C 1.54633 * 110.39103 * 156.59090 * 18 17 15 27 27 C 1.38912 * 119.99298 * 359.70395 * 13 12 11 28 28 C 1.38011 * 120.00141 * 359.97438 * 27 13 12 29 29 H 0.96998 * 120.00438 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99253 * 359.97438 * 11 10 9 31 31 H 1.08003 * 120.00095 * 180.27430 * 12 11 10 32 32 H 0.96998 * 120.00033 * 215.14244 * 14 13 12 33 33 H 0.97004 * 120.00074 * 0.02562 * 17 15 14 34 34 H 1.08004 * 124.44850 * 77.58034 * 20 18 17 35 35 H 1.07991 * 124.40630 * 179.97438 * 21 20 18 36 36 H 1.09002 * 109.47016 * 189.69645 * 24 22 21 37 37 H 1.09005 * 109.46836 * 309.69346 * 24 22 21 38 38 H 0.96696 * 113.99825 * 179.97438 * 25 24 22 39 39 H 1.09003 * 111.03882 * 212.21333 * 26 18 17 40 40 H 1.09004 * 111.03377 * 336.10815 * 26 18 17 41 41 H 1.08002 * 119.99735 * 179.97438 * 27 13 12 42 42 H 1.08003 * 119.99785 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5471 1.4404 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0010 9 8 1.3350 -2.3680 -0.0044 10 6 2.0705 -3.5039 -0.1156 11 6 1.4356 -4.7338 -0.2334 12 6 2.1831 -5.8877 -0.3520 13 6 3.5706 -5.8206 -0.3418 14 7 4.3290 -6.9921 -0.4554 15 6 3.8937 -8.0042 -1.2317 16 8 2.8047 -7.9340 -1.7678 17 7 4.6654 -9.0940 -1.4137 18 6 4.1924 -10.1939 -2.2579 19 1 3.5969 -9.8076 -3.0851 20 6 3.3843 -11.1748 -1.4407 21 6 4.0891 -12.2396 -1.1571 22 6 5.4803 -12.1434 -1.7391 23 1 5.7593 -13.0843 -2.2135 24 6 6.4894 -11.7745 -0.6498 25 8 6.6453 -12.8755 0.2478 26 6 5.3884 -11.0153 -2.7927 27 6 4.2055 -4.5913 -0.2182 28 6 3.4579 -3.4366 -0.1063 29 1 -0.4851 0.8400 -0.0004 30 1 0.3569 -4.7865 -0.2361 31 1 1.6894 -6.8435 -0.4481 32 1 5.1679 -7.0753 0.0245 33 1 5.5341 -9.1501 -0.9856 34 1 2.3615 -11.0162 -1.1321 35 1 3.7240 -13.0778 -0.5824 36 1 7.4502 -11.5410 -1.1086 37 1 6.1287 -10.9054 -0.0996 38 1 7.2724 -12.7121 0.9654 39 1 5.1740 -11.4202 -3.7818 40 1 6.2993 -10.4168 -2.8063 41 1 5.2842 -4.5391 -0.2098 42 1 3.9515 -2.4808 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081507501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:19 Heat of formation + Delta-G solvation = -75.867767 kcal Electronic energy + Delta-G solvation = -25416.726654 eV Core-core repulsion = 21555.258055 eV Total energy + Delta-G solvation = -3861.468599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77965 -40.73767 -39.92786 -38.18363 -37.16853 -35.42231 -34.58243 -34.03586 -31.84654 -30.77292 -29.84653 -28.57323 -27.25743 -25.14776 -23.91510 -23.25868 -21.98100 -21.52388 -20.10052 -19.72231 -19.30024 -18.95842 -18.23051 -18.13808 -17.02400 -16.69453 -16.43543 -16.32498 -15.94591 -15.54896 -15.50054 -15.33416 -15.14104 -14.88749 -14.53717 -14.18546 -13.61295 -13.35765 -13.30085 -13.20982 -13.08344 -12.83129 -12.67150 -12.49425 -12.42914 -12.15146 -12.10290 -11.91491 -11.35989 -11.33659 -10.97038 -10.83095 -10.54279 -10.15000 -10.08511 -9.82135 -8.56207 -8.43466 -6.10998 0.54705 0.60156 1.07683 1.37683 1.47169 1.55653 1.79725 2.11929 2.20805 2.85852 3.17868 3.22050 3.31376 3.51706 3.54969 3.81848 4.07461 4.09627 4.16410 4.19995 4.39118 4.49372 4.52255 4.58735 4.65511 4.69407 4.78094 4.82704 4.92911 5.07441 5.08199 5.18130 5.22968 5.32542 5.45950 5.49703 5.54135 5.61505 5.71236 5.80839 6.01885 6.05819 6.21882 6.93068 7.00563 7.05891 7.56125 7.82289 8.79902 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035692 B = 0.002143 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.296783 B =13061.683511 C =13399.486104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.021 2.979 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.233 6.233 10 C 0.106 3.894 11 C -0.191 4.191 12 C -0.074 4.074 13 C 0.082 3.918 14 N -0.662 5.662 15 C 0.697 3.303 16 O -0.619 6.619 17 N -0.714 5.714 18 C 0.178 3.822 19 H 0.075 0.925 20 C -0.195 4.195 21 C -0.126 4.126 22 C -0.073 4.073 23 H 0.094 0.906 24 C 0.085 3.915 25 O -0.594 6.594 26 C -0.112 4.112 27 C -0.079 4.079 28 C -0.219 4.219 29 H 0.272 0.728 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.421 0.579 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.397 0.603 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.160 0.840 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.417 -23.601 -1.634 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.840 3.160 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.140 6.140 10 C 0.055 3.945 11 C -0.211 4.211 12 C -0.094 4.094 13 C -0.012 4.012 14 N -0.312 5.312 15 C 0.397 3.603 16 O -0.498 6.498 17 N -0.370 5.370 18 C 0.073 3.927 19 H 0.093 0.907 20 C -0.214 4.214 21 C -0.145 4.145 22 C -0.092 4.092 23 H 0.112 0.888 24 C 0.007 3.993 25 O -0.402 6.402 26 C -0.150 4.150 27 C -0.099 4.099 28 C -0.239 4.239 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.260 0.740 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.246 0.754 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.178 0.822 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.655 -23.677 -2.524 30.249 hybrid contribution 0.394 1.023 0.906 1.422 sum 19.049 -22.654 -1.619 29.643 Atomic orbital electron populations 1.70207 1.08170 1.28732 1.49094 1.26651 0.96858 1.02924 0.95981 0.84551 0.77918 0.74360 0.79147 1.18999 1.19895 1.17133 1.21880 0.92713 0.81295 1.52879 0.87537 1.83961 1.35973 1.12580 1.81440 1.19860 0.91865 0.87634 0.95099 1.20252 0.99707 0.90397 1.10714 1.20846 0.93273 0.97178 0.98111 1.17126 0.89887 0.85666 1.08557 1.42087 1.26071 1.13708 1.49331 1.16191 0.84099 0.80638 0.79349 1.90919 1.22858 1.81176 1.54889 1.45047 1.21341 1.16678 1.53974 1.20628 0.95430 0.85074 0.91522 0.90733 1.23634 0.99492 0.96405 1.01912 1.23444 0.95293 0.97816 0.97950 1.21097 0.92664 1.00337 0.95066 0.88766 1.22303 0.98076 0.88414 0.90458 1.86436 1.68579 1.41252 1.43931 1.22750 0.97654 0.95532 0.99039 1.20810 1.00569 0.88955 0.99595 1.21119 0.92485 0.99922 1.10369 0.91951 0.87285 0.85194 0.74029 0.75255 0.87580 0.85637 0.90947 0.93488 0.75354 0.87605 0.87637 0.82214 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.57 13.67 21.61 0.30 -57.27 16 2 C -0.03 -1.55 5.49 84.83 0.47 -1.09 16 3 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.41 -23.95 9.48 67.91 0.64 -23.31 16 8 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 9 O -0.23 -14.27 9.76 -22.85 -0.22 -14.50 16 10 C 0.11 5.43 6.65 22.59 0.15 5.58 16 11 C -0.19 -8.97 9.98 22.37 0.22 -8.75 16 12 C -0.07 -2.99 8.69 22.38 0.19 -2.79 16 13 C 0.08 2.75 6.30 38.16 0.24 3.00 16 14 N -0.66 -15.85 5.34 -317.05 -1.69 -17.54 16 15 C 0.70 18.51 8.40 179.06 1.50 20.01 16 16 O -0.62 -22.90 13.45 -3.99 -0.05 -22.95 16 17 N -0.71 -11.91 5.08 -458.12 -2.33 -14.24 16 18 C 0.18 3.01 3.21 44.93 0.14 3.15 16 19 H 0.07 1.65 7.60 -2.39 -0.02 1.64 16 20 C -0.19 -3.64 10.43 25.98 0.27 -3.37 16 21 C -0.13 -1.88 9.98 25.98 0.26 -1.62 16 22 C -0.07 -0.74 3.18 -10.85 -0.03 -0.78 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 C 0.09 0.65 6.31 71.98 0.45 1.10 16 25 O -0.59 -6.21 13.54 -148.98 -2.02 -8.22 16 26 C -0.11 -0.99 6.31 31.71 0.20 -0.79 16 27 C -0.08 -2.59 9.96 22.38 0.22 -2.37 16 28 C -0.22 -9.31 9.16 22.38 0.20 -9.10 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 31 H 0.13 5.30 6.22 -2.91 -0.02 5.29 16 32 H 0.42 6.09 8.84 -92.71 -0.82 5.28 16 33 H 0.41 3.77 7.29 -92.71 -0.68 3.09 16 34 H 0.11 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.13 1.88 8.06 -2.92 -0.02 1.86 16 36 H 0.07 0.24 8.10 -2.39 -0.02 0.22 16 37 H 0.05 0.34 6.83 -2.38 -0.02 0.32 16 38 H 0.40 0.83 9.12 -74.06 -0.68 0.15 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.51 7.77 -2.38 -0.02 0.49 16 41 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.13 5.52 5.63 -2.91 -0.02 5.51 16 Total: -1.00 -83.23 354.69 0.08 -83.15 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -1.07 Total: 27.95 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 5.15 Total: -21.12 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.73 Total: -89.06 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.29 Total: -45.67 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -83.23 0.08 -83.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081507501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.283 kcal (2) G-P(sol) polarization free energy of solvation -83.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds