Wall clock time and date at job start Tue Mar 31 2020 12:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48504 * 109.46718 * 239.99778 * 3 2 1 5 5 H 1.48506 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47158 * 119.99740 * 3 2 1 7 7 C 1.38653 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00009 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.35746 * 116.99881 * 185.40773 * 9 7 2 11 11 C 1.38960 * 120.03092 * 186.14986 * 10 9 7 12 12 C 1.38129 * 120.06614 * 180.23254 * 11 10 9 13 13 C 1.38195 * 120.13643 * 359.49225 * 12 11 10 14 14 C 1.38914 * 120.06956 * 0.27773 * 13 12 11 15 15 N 1.39951 * 120.03329 * 179.97438 * 14 13 12 16 16 C 1.34784 * 119.99709 * 33.64091 * 15 14 13 17 17 O 1.21583 * 120.00049 * 5.26544 * 16 15 14 18 18 N 1.34777 * 119.99312 * 185.26443 * 16 15 14 19 19 C 1.46504 * 119.99472 * 180.02562 * 18 16 15 20 20 H 1.08999 * 110.34330 * 35.83162 * 19 18 16 21 21 C 1.51104 * 110.38455 * 273.54659 * 19 18 16 22 22 C 1.30530 * 111.10256 * 224.75132 * 21 19 18 23 23 C 1.51100 * 111.10476 * 0.02562 * 22 21 19 24 24 H 1.08996 * 110.38537 * 257.62647 * 23 22 21 25 25 C 1.52993 * 110.38746 * 135.35902 * 23 22 21 26 26 O 1.42900 * 109.47040 * 66.45567 * 25 23 22 27 27 C 1.54631 * 110.38610 * 158.24461 * 19 18 16 28 28 C 1.38729 * 120.03924 * 5.89851 * 10 9 7 29 29 H 0.97007 * 120.00176 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.96356 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.92442 * 179.76854 * 12 11 10 32 32 H 1.07998 * 119.96511 * 180.25355 * 13 12 11 33 33 H 0.96998 * 119.99874 * 213.63537 * 15 14 13 34 34 H 0.97000 * 120.00564 * 359.97438 * 18 16 15 35 35 H 1.08001 * 124.44588 * 44.73422 * 21 19 18 36 36 H 1.07998 * 124.44457 * 180.02562 * 22 21 19 37 37 H 1.09002 * 109.47437 * 186.45536 * 25 23 22 38 38 H 1.09001 * 109.47271 * 306.45265 * 25 23 22 39 39 H 0.96700 * 114.00460 * 180.02562 * 26 25 23 40 40 H 1.09004 * 111.03525 * 261.47619 * 27 19 18 41 41 H 1.09001 * 111.03739 * 25.40900 * 27 19 18 42 42 H 1.08003 * 120.06530 * 0.04444 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0694 -3.5042 0.1151 11 6 1.4553 -4.7448 -0.0060 12 6 2.2014 -5.9010 0.1152 13 6 3.5618 -5.8278 0.3466 14 6 4.1823 -4.5905 0.4639 15 7 5.5600 -4.5173 0.6988 16 6 6.3834 -5.4464 0.1740 17 8 5.9434 -6.2918 -0.5809 18 7 7.6946 -5.4381 0.4861 19 6 8.5897 -6.4477 -0.0848 20 1 8.2913 -6.6847 -1.1060 21 6 8.5872 -7.6955 0.7673 22 6 9.8004 -8.1395 0.9541 23 6 10.8142 -7.2614 0.2583 24 1 11.1518 -7.7302 -0.6659 25 6 12.0035 -6.9864 1.1807 26 8 12.7147 -8.2033 1.4165 27 6 10.0536 -5.9510 -0.0501 28 6 3.4349 -3.4275 0.3479 29 1 -0.4851 0.8401 -0.0004 30 1 0.3931 -4.8051 -0.1917 31 1 1.7211 -6.8641 0.0244 32 1 4.1431 -6.7335 0.4369 33 1 5.9223 -3.7978 1.2392 34 1 8.0457 -4.7634 1.0880 35 1 7.6983 -8.1590 1.1692 36 1 10.0471 -9.0189 1.5304 37 1 12.6685 -6.2623 0.7101 38 1 11.6433 -6.5865 2.1286 39 1 13.4831 -8.1040 1.9950 40 1 10.3515 -5.5435 -1.0162 41 1 10.1995 -5.2182 0.7435 42 1 3.9150 -2.4643 0.4390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081507974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:09 Heat of formation + Delta-G solvation = -79.305722 kcal Electronic energy + Delta-G solvation = -25307.664354 eV Core-core repulsion = 21446.046674 eV Total energy + Delta-G solvation = -3861.617680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79685 -40.68093 -39.87512 -38.18810 -37.25656 -35.63687 -34.81970 -34.18121 -31.07950 -30.81414 -30.25216 -28.73907 -27.26443 -24.95705 -23.60695 -23.46838 -21.92218 -21.69827 -20.18210 -19.76078 -19.33395 -19.02880 -18.17009 -17.58111 -17.03417 -16.84159 -16.62397 -16.41645 -15.94099 -15.80993 -15.58764 -15.44378 -15.10106 -14.63118 -14.55315 -14.22697 -13.73945 -13.55101 -13.29517 -12.95624 -12.84275 -12.75158 -12.66923 -12.53500 -12.39109 -12.24913 -12.12966 -12.10700 -11.54775 -11.29050 -11.13749 -10.81543 -10.70755 -10.21074 -10.03200 -9.31864 -8.82773 -8.44477 -6.13309 0.46187 0.72094 1.14745 1.36843 1.47716 1.53381 1.66155 2.05634 2.19623 2.86330 3.10976 3.19816 3.35999 3.51041 3.53303 3.72039 4.09294 4.13368 4.26451 4.34431 4.35365 4.44135 4.47427 4.55378 4.64485 4.71371 4.75586 4.80356 4.86043 5.03441 5.10661 5.12428 5.19905 5.35579 5.44939 5.49774 5.52956 5.69038 5.70220 5.82109 5.97486 6.03349 6.22276 6.95665 6.96334 6.99735 7.46510 7.79494 8.78258 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019464 B = 0.002420 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.216031 B =11569.495152 C =12822.486290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.215 4.215 12 C -0.052 4.052 13 C -0.200 4.200 14 C 0.207 3.793 15 N -0.674 5.674 16 C 0.701 3.299 17 O -0.610 6.610 18 N -0.716 5.716 19 C 0.183 3.817 20 H 0.079 0.921 21 C -0.190 4.190 22 C -0.134 4.134 23 C -0.069 4.069 24 H 0.090 0.910 25 C 0.086 3.914 26 O -0.595 6.595 27 C -0.109 4.109 28 C -0.261 4.261 29 H 0.272 0.728 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.420 0.580 34 H 0.414 0.586 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.397 0.603 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.023 -10.275 4.967 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.132 6.132 10 C 0.084 3.916 11 C -0.235 4.235 12 C -0.070 4.070 13 C -0.221 4.221 14 C 0.112 3.888 15 N -0.322 5.322 16 C 0.402 3.598 17 O -0.489 6.489 18 N -0.372 5.372 19 C 0.078 3.922 20 H 0.097 0.903 21 C -0.209 4.209 22 C -0.153 4.153 23 C -0.088 4.088 24 H 0.108 0.892 25 C 0.009 3.991 26 O -0.404 6.404 27 C -0.147 4.147 28 C -0.283 4.283 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.170 0.830 32 H 0.145 0.855 33 H 0.258 0.742 34 H 0.251 0.749 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 25.853 -11.091 3.887 28.399 hybrid contribution 0.343 1.405 0.809 1.657 sum 26.196 -9.686 4.696 28.322 Atomic orbital electron populations 1.70185 1.08045 1.28854 1.48669 1.26603 0.96852 1.02769 0.95859 0.84648 0.77391 0.74217 0.79952 1.18389 1.19877 1.17730 1.21747 0.92463 0.81346 1.53302 0.88056 1.83986 1.35522 1.12491 1.81235 1.19585 0.90790 0.87974 0.93284 1.20462 1.00648 0.90057 1.12366 1.20899 0.92965 0.97568 0.95592 1.20844 0.94789 0.96346 1.10152 1.17167 0.81963 0.92989 0.96686 1.42449 1.04285 1.30670 1.54794 1.16094 0.82076 0.81447 0.80226 1.90926 1.76208 1.41035 1.40722 1.45062 1.05093 1.35040 1.51994 1.20743 0.89466 0.85531 0.96474 0.90292 1.23554 0.97961 0.98721 1.00684 1.23289 0.93911 0.99780 0.98339 1.21033 0.94083 0.94746 0.98908 0.89193 1.22197 0.92480 0.86227 0.98216 1.86433 1.46968 1.33932 1.73050 1.22771 0.90154 0.97015 1.04793 1.20796 0.94051 0.98098 1.15340 0.91862 0.86289 0.83006 0.85467 0.74247 0.74857 0.87432 0.85387 0.91607 0.92631 0.75317 0.88204 0.87861 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 3 Si 1.02 41.82 29.55 68.60 2.03 43.85 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.41 -23.63 9.44 67.92 0.64 -22.99 16 8 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 9 O -0.23 -13.54 9.76 -22.73 -0.22 -13.77 16 10 C 0.13 6.80 6.64 22.56 0.15 6.95 16 11 C -0.22 -9.52 9.99 22.42 0.22 -9.30 16 12 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 13 C -0.20 -7.61 8.65 22.42 0.19 -7.41 16 14 C 0.21 7.85 6.27 38.13 0.24 8.09 16 15 N -0.67 -19.31 5.35 -317.23 -1.70 -21.00 16 16 C 0.70 20.08 8.29 179.05 1.48 21.56 16 17 O -0.61 -22.79 13.75 -3.98 -0.05 -22.84 16 18 N -0.72 -13.32 5.15 -458.10 -2.36 -15.68 16 19 C 0.18 3.25 3.20 44.93 0.14 3.39 16 20 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 21 C -0.19 -3.62 10.39 26.26 0.27 -3.35 16 22 C -0.13 -2.11 9.92 26.26 0.26 -1.85 16 23 C -0.07 -0.80 3.18 -10.86 -0.03 -0.83 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 C 0.09 0.71 6.38 71.98 0.46 1.17 16 26 O -0.60 -6.40 13.48 -148.98 -2.01 -8.41 16 27 C -0.11 -1.07 6.39 31.70 0.20 -0.87 16 28 C -0.26 -11.43 9.04 22.51 0.20 -11.22 16 29 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 31 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.13 4.73 6.43 -2.91 -0.02 4.71 16 33 H 0.42 8.90 8.83 -92.71 -0.82 8.08 16 34 H 0.41 4.72 8.40 -92.71 -0.78 3.95 16 35 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.40 0.76 9.12 -74.06 -0.68 0.09 16 40 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.10 0.59 7.57 -2.39 -0.02 0.57 16 42 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 Total: -1.00 -80.16 357.48 -0.07 -80.23 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -1.18 Total: 32.53 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.13 Total: -19.21 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -3.76 Total: -92.39 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.28 Total: -45.02 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -80.16 -0.07 -80.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081507974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.927 kcal (2) G-P(sol) polarization free energy of solvation -80.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds