Wall clock time and date at job start Tue Mar 31 2020 12:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47372 * 300.00393 * 3 2 1 6 6 H 1.48501 * 109.47180 * 60.00194 * 3 2 1 7 7 C 1.38948 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99641 * 197.99335 * 7 2 1 9 9 N 1.37096 * 120.00241 * 17.99380 * 7 2 1 10 10 C 1.34768 * 119.99946 * 44.48552 * 9 7 2 11 11 O 1.21295 * 120.00384 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00280 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47542 * 179.97438 * 12 10 9 14 14 O 1.42894 * 109.47344 * 179.97438 * 13 12 10 15 15 C 1.35913 * 117.00098 * 180.02562 * 14 13 12 16 16 C 1.38848 * 119.98444 * 359.72738 * 15 14 13 17 17 C 1.38251 * 120.23714 * 179.76436 * 16 15 14 18 18 C 1.38000 * 120.20618 * 0.50863 * 17 16 15 19 19 C 1.39569 * 119.96746 * 359.75049 * 18 17 16 20 20 C 1.47859 * 120.11821 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00151 * 0.02562 * 20 19 18 22 22 O 1.21554 * 119.99753 * 180.02562 * 20 19 18 23 23 C 1.38461 * 119.98409 * 180.02562 * 15 14 13 24 24 C 1.46506 * 120.00043 * 224.48858 * 9 7 2 25 25 C 1.53004 * 117.49642 * 3.27209 * 24 9 7 26 26 C 1.52997 * 117.49877 * 294.61345 * 24 9 7 27 27 H 0.97002 * 119.99653 * 354.95625 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00043 * 12 10 9 29 29 H 1.09000 * 109.46664 * 300.00019 * 12 10 9 30 30 H 1.09007 * 109.47219 * 59.99832 * 13 12 10 31 31 H 1.08996 * 109.47600 * 300.00586 * 13 12 10 32 32 H 1.08002 * 119.88215 * 0.02562 * 16 15 14 33 33 H 1.08002 * 119.89151 * 180.25852 * 17 16 15 34 34 H 1.08000 * 120.01921 * 179.76489 * 18 17 16 35 35 H 0.97005 * 119.99869 * 0.02562 * 21 20 19 36 36 H 0.96993 * 120.00155 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.10180 * 359.95967 * 23 15 14 38 38 H 1.08997 * 115.54929 * 148.93783 * 24 9 7 39 39 H 1.08992 * 117.49890 * 359.97438 * 25 24 9 40 40 H 1.09002 * 117.49577 * 145.02454 * 25 24 9 41 41 H 1.08994 * 117.50163 * 214.98320 * 26 24 9 42 42 H 1.09006 * 117.49993 * 359.97290 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0493 -1.2263 0.2884 9 7 1.3736 -2.3614 -0.3678 10 6 0.5767 -2.3774 -1.4545 11 8 0.4219 -1.3673 -2.1080 12 6 -0.1220 -3.6503 -1.8580 13 6 -0.9577 -3.3972 -3.1143 14 8 -1.6197 -4.6043 -3.4972 15 6 -2.4084 -4.5515 -4.6028 16 6 -2.5458 -3.3591 -5.3009 17 6 -3.3428 -3.3007 -6.4290 18 6 -4.0156 -4.4249 -6.8628 19 6 -3.8879 -5.6266 -6.1645 20 6 -4.6076 -6.8329 -6.6259 21 7 -5.3883 -6.7735 -7.7229 22 8 -4.4952 -7.8782 -6.0159 23 6 -3.0793 -5.6852 -5.0289 24 6 1.5610 -3.5816 0.4211 25 6 2.4158 -3.4806 1.6861 26 6 2.9615 -4.1971 0.4484 27 1 -0.4850 0.8368 0.0739 28 1 -0.7739 -3.9792 -1.0487 29 1 0.6196 -4.4222 -2.0638 30 1 -0.3062 -3.0680 -3.9239 31 1 -1.6991 -2.6254 -2.9082 32 1 -2.0248 -2.4752 -4.9638 33 1 -3.4424 -2.3714 -6.9702 34 1 -4.6404 -4.3749 -7.7422 35 1 -5.4777 -5.9393 -8.2100 36 1 -5.8602 -7.5649 -8.0259 37 1 -2.9766 -6.6122 -4.4844 38 1 0.7111 -4.2637 0.4412 39 1 2.8389 -2.5065 1.9311 40 1 2.1283 -4.0966 2.5382 41 1 3.0329 -5.2840 0.4866 42 1 3.7434 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081713012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:31 Heat of formation + Delta-G solvation = -46.361756 kcal Electronic energy + Delta-G solvation = -25661.289280 eV Core-core repulsion = 21801.100157 eV Total energy + Delta-G solvation = -3860.189122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49509 -39.37627 -38.60376 -37.13455 -36.11494 -34.06068 -32.99123 -31.70824 -31.19840 -30.72040 -29.46277 -25.72537 -24.52133 -22.98359 -22.50206 -21.71340 -21.17307 -20.52436 -19.11651 -18.78722 -17.46399 -16.79037 -16.21702 -16.10887 -16.01096 -15.84755 -15.40999 -14.94873 -14.71115 -14.43625 -14.20167 -13.91265 -13.83679 -13.64824 -13.12634 -12.78955 -12.53808 -12.11335 -12.00923 -11.69485 -11.48716 -11.13487 -10.96961 -10.90450 -10.73387 -10.65580 -10.37650 -10.31056 -10.18991 -10.02110 -10.00195 -9.76319 -9.17662 -8.77415 -8.29869 -8.13085 -7.09404 -6.16796 -3.92652 0.66160 1.28138 2.68405 3.00679 3.25833 3.35307 3.37275 3.43497 3.71772 4.03952 4.24109 4.52806 4.67329 4.73196 4.77784 4.86614 5.01391 5.20374 5.23607 5.37098 5.39891 5.44711 5.57908 5.63899 5.74250 5.76340 5.85605 6.03431 6.07300 6.14199 6.21431 6.22889 6.28543 6.32868 6.43710 6.46116 6.56722 6.72879 6.90957 7.01532 7.47549 7.57519 7.96395 8.21417 8.99614 9.07158 9.59382 10.19814 10.92388 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002683 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.050049 B =10431.674147 C =11614.934469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.079 0.921 9 N -0.425 5.425 10 C 0.488 3.512 11 O -0.537 6.537 12 C -0.132 4.132 13 C 0.079 3.921 14 O -0.316 6.316 15 C 0.136 3.864 16 C -0.180 4.180 17 C -0.086 4.086 18 C -0.132 4.132 19 C -0.108 4.108 20 C 0.567 3.433 21 N -0.851 5.851 22 O -0.538 6.538 23 C -0.096 4.096 24 C 0.072 3.928 25 C -0.173 4.173 26 C -0.207 4.207 27 H 0.264 0.736 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.401 0.599 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 -9.125 -11.681 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.475 4.475 8 H 0.096 0.904 9 N -0.145 5.145 10 C 0.275 3.725 11 O -0.416 6.416 12 C -0.173 4.173 13 C 0.004 3.996 14 O -0.229 6.229 15 C 0.090 3.910 16 C -0.199 4.199 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.111 4.111 20 C 0.353 3.647 21 N -0.416 5.416 22 O -0.415 6.415 23 C -0.116 4.116 24 C -0.034 4.034 25 C -0.211 4.211 26 C -0.246 4.246 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.235 0.765 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.586 -9.200 -11.433 16.520 hybrid contribution 0.093 1.132 -0.263 1.166 sum -7.493 -8.068 -11.697 16.063 Atomic orbital electron populations 1.69832 1.06557 1.27351 1.42956 1.25257 0.94858 0.99432 0.94186 0.86140 0.79815 0.82528 0.77510 1.19563 1.20639 1.21155 1.18898 0.94455 0.83688 1.50420 0.90365 1.42714 1.43839 1.07031 1.20952 1.19430 0.83197 0.88139 0.81710 1.90535 1.62989 1.34791 1.53293 1.21493 0.99388 0.99675 0.96720 1.22591 0.95588 0.83975 0.97458 1.86032 1.58433 1.37731 1.40714 1.18891 0.91358 0.93508 0.87275 1.21707 1.02460 0.98099 0.97596 1.20894 0.95510 0.98362 0.95639 1.21080 1.01470 0.92292 1.00304 1.19519 1.00562 0.93589 0.97414 1.18249 0.78416 0.87988 0.80062 1.43730 1.50902 1.16692 1.30246 1.90828 1.63476 1.31290 1.55889 1.20463 0.96655 0.98035 0.96447 1.21742 0.92743 0.91548 0.97336 1.23078 1.04421 1.02481 0.91109 1.23323 0.99624 0.98564 1.03056 0.92612 0.89607 0.89593 0.91256 0.90897 0.84198 0.85065 0.85755 0.76888 0.76475 0.83875 0.87828 0.87482 0.89735 0.89695 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.11 11.74 55.50 0.65 -23.45 16 2 C 0.07 2.01 4.39 -17.47 -0.08 1.94 16 3 Si 0.91 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.35 -9.28 7.91 -14.93 -0.12 -9.39 16 8 H 0.08 2.03 7.27 -52.48 -0.38 1.65 16 9 N -0.42 -10.36 2.83 -107.72 -0.31 -10.66 16 10 C 0.49 11.89 6.96 -10.99 -0.08 11.81 16 11 O -0.54 -15.05 13.76 5.54 0.08 -14.97 16 12 C -0.13 -2.49 4.69 -27.88 -0.13 -2.62 16 13 C 0.08 1.38 4.03 37.15 0.15 1.53 16 14 O -0.32 -5.16 10.13 -19.47 -0.20 -5.36 16 15 C 0.14 1.99 6.68 -39.27 -0.26 1.73 16 16 C -0.18 -2.35 9.03 -39.35 -0.36 -2.70 16 17 C -0.09 -0.88 10.03 -39.66 -0.40 -1.28 16 18 C -0.13 -1.22 9.54 -39.17 -0.37 -1.59 16 19 C -0.11 -1.25 5.87 -104.99 -0.62 -1.87 16 20 C 0.57 6.46 8.05 -12.32 -0.10 6.36 16 21 N -0.85 -5.53 8.82 30.53 0.27 -5.26 16 22 O -0.54 -8.28 17.18 5.32 0.09 -8.19 16 23 C -0.10 -1.33 9.53 -39.02 -0.37 -1.70 16 24 C 0.07 1.42 5.87 -67.93 -0.40 1.02 16 25 C -0.17 -3.07 9.80 -26.69 -0.26 -3.33 16 26 C -0.21 -3.46 10.36 -26.69 -0.28 -3.74 16 27 H 0.26 7.29 8.32 -40.82 -0.34 6.96 16 28 H 0.09 1.54 7.57 -51.93 -0.39 1.15 16 29 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 30 H 0.07 1.21 7.62 -51.93 -0.40 0.81 16 31 H 0.07 1.35 7.60 -51.93 -0.39 0.95 16 32 H 0.14 1.87 6.28 -52.49 -0.33 1.54 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.66 6.40 -52.49 -0.34 0.33 16 35 H 0.40 1.45 6.86 -40.82 -0.28 1.17 16 36 H 0.40 2.04 8.93 -40.82 -0.36 1.68 16 37 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 38 H 0.10 1.82 6.96 -51.93 -0.36 1.46 16 39 H 0.11 2.10 6.73 -51.93 -0.35 1.75 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -34.70 356.90 -7.97 -42.67 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.23 Total: 7.24 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.67 Total: -3.85 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.62 Total: -39.38 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.03 Total: -28.52 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.70 -7.97 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.693 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds