Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47372 * 300.00393 * 3 2 1 6 6 H 1.48501 * 109.47180 * 60.00194 * 3 2 1 7 7 C 1.38948 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99641 * 197.99335 * 7 2 1 9 9 N 1.37096 * 120.00241 * 17.99380 * 7 2 1 10 10 C 1.34768 * 119.99946 * 44.48552 * 9 7 2 11 11 O 1.21295 * 120.00384 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00280 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47542 * 179.97438 * 12 10 9 14 14 O 1.42894 * 109.47344 * 179.97438 * 13 12 10 15 15 C 1.35913 * 117.00098 * 180.02562 * 14 13 12 16 16 C 1.38848 * 119.98444 * 359.72738 * 15 14 13 17 17 C 1.38251 * 120.23714 * 179.76436 * 16 15 14 18 18 C 1.38000 * 120.20618 * 0.50863 * 17 16 15 19 19 C 1.39569 * 119.96746 * 359.75049 * 18 17 16 20 20 C 1.47859 * 120.11821 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00151 * 0.02562 * 20 19 18 22 22 O 1.21554 * 119.99753 * 180.02562 * 20 19 18 23 23 C 1.38461 * 119.98409 * 180.02562 * 15 14 13 24 24 C 1.46506 * 120.00043 * 224.48858 * 9 7 2 25 25 C 1.53004 * 117.49642 * 3.27209 * 24 9 7 26 26 C 1.52997 * 117.49877 * 294.61345 * 24 9 7 27 27 H 0.97002 * 119.99653 * 354.95625 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00043 * 12 10 9 29 29 H 1.09000 * 109.46664 * 300.00019 * 12 10 9 30 30 H 1.09007 * 109.47219 * 59.99832 * 13 12 10 31 31 H 1.08996 * 109.47600 * 300.00586 * 13 12 10 32 32 H 1.08002 * 119.88215 * 0.02562 * 16 15 14 33 33 H 1.08002 * 119.89151 * 180.25852 * 17 16 15 34 34 H 1.08000 * 120.01921 * 179.76489 * 18 17 16 35 35 H 0.97005 * 119.99869 * 0.02562 * 21 20 19 36 36 H 0.96993 * 120.00155 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.10180 * 359.95967 * 23 15 14 38 38 H 1.08997 * 115.54929 * 148.93783 * 24 9 7 39 39 H 1.08992 * 117.49890 * 359.97438 * 25 24 9 40 40 H 1.09002 * 117.49577 * 145.02454 * 25 24 9 41 41 H 1.08994 * 117.50163 * 214.98320 * 26 24 9 42 42 H 1.09006 * 117.49993 * 359.97290 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0493 -1.2263 0.2884 9 7 1.3736 -2.3614 -0.3678 10 6 0.5767 -2.3774 -1.4545 11 8 0.4219 -1.3673 -2.1080 12 6 -0.1220 -3.6503 -1.8580 13 6 -0.9577 -3.3972 -3.1143 14 8 -1.6197 -4.6043 -3.4972 15 6 -2.4084 -4.5515 -4.6028 16 6 -2.5458 -3.3591 -5.3009 17 6 -3.3428 -3.3007 -6.4290 18 6 -4.0156 -4.4249 -6.8628 19 6 -3.8879 -5.6266 -6.1645 20 6 -4.6076 -6.8329 -6.6259 21 7 -5.3883 -6.7735 -7.7229 22 8 -4.4952 -7.8782 -6.0159 23 6 -3.0793 -5.6852 -5.0289 24 6 1.5610 -3.5816 0.4211 25 6 2.4158 -3.4806 1.6861 26 6 2.9615 -4.1971 0.4484 27 1 -0.4850 0.8368 0.0739 28 1 -0.7739 -3.9792 -1.0487 29 1 0.6196 -4.4222 -2.0638 30 1 -0.3062 -3.0680 -3.9239 31 1 -1.6991 -2.6254 -2.9082 32 1 -2.0248 -2.4752 -4.9638 33 1 -3.4424 -2.3714 -6.9702 34 1 -4.6404 -4.3749 -7.7422 35 1 -5.4777 -5.9393 -8.2100 36 1 -5.8602 -7.5649 -8.0259 37 1 -2.9766 -6.6122 -4.4844 38 1 0.7111 -4.2637 0.4412 39 1 2.8389 -2.5065 1.9311 40 1 2.1283 -4.0966 2.5382 41 1 3.0329 -5.2840 0.4866 42 1 3.7434 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081713012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = -71.070201 kcal Electronic energy + Delta-G solvation = -25662.360718 eV Core-core repulsion = 21801.100157 eV Total energy + Delta-G solvation = -3861.260561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50147 -40.61712 -40.14423 -38.23352 -37.73362 -34.93257 -34.81490 -33.26357 -32.57272 -32.03992 -30.57979 -27.47185 -25.76814 -24.35240 -23.45390 -23.10592 -22.76385 -21.55456 -20.86003 -19.75464 -18.49317 -18.03695 -17.81447 -17.46837 -17.28956 -17.04883 -16.70274 -16.36077 -15.96481 -15.85875 -15.58245 -15.26348 -15.07346 -14.74946 -14.49615 -14.26864 -13.98848 -13.75173 -13.14859 -13.03259 -12.92940 -12.81914 -12.62289 -12.55225 -12.22756 -12.06982 -11.97074 -11.78037 -11.65430 -11.25926 -11.22060 -10.76031 -10.75083 -10.11053 -10.03408 -9.33148 -8.99808 -8.21638 -6.00307 -0.27896 0.34907 1.35967 1.43144 1.51130 1.77547 1.87905 2.22298 2.38132 2.55309 2.78967 3.11006 3.17088 3.35170 3.71446 3.74971 3.93096 3.97396 4.00295 4.07053 4.11705 4.15186 4.27181 4.30472 4.42616 4.47883 4.56735 4.75619 4.82183 4.88217 4.90513 5.06051 5.15341 5.24451 5.28971 5.33916 5.46616 5.50231 5.59838 5.85684 6.19324 6.29720 6.38962 7.01303 7.14618 7.25550 7.66507 8.29826 8.87225 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002683 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.050049 B =10431.674147 C =11614.934469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.022 3.978 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.355 4.355 8 H 0.079 0.921 9 N -0.441 5.441 10 C 0.474 3.526 11 O -0.586 6.586 12 C -0.118 4.118 13 C 0.095 3.905 14 O -0.325 6.325 15 C 0.107 3.893 16 C -0.191 4.191 17 C -0.081 4.081 18 C -0.108 4.108 19 C -0.113 4.113 20 C 0.565 3.435 21 N -0.822 5.822 22 O -0.587 6.587 23 C -0.113 4.113 24 C 0.041 3.959 25 C -0.171 4.171 26 C -0.179 4.179 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 -10.014 -13.244 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.096 0.904 9 N -0.161 5.161 10 C 0.263 3.737 11 O -0.468 6.468 12 C -0.158 4.158 13 C 0.020 3.980 14 O -0.240 6.240 15 C 0.061 3.939 16 C -0.210 4.210 17 C -0.099 4.099 18 C -0.127 4.127 19 C -0.117 4.117 20 C 0.351 3.649 21 N -0.387 5.387 22 O -0.468 6.468 23 C -0.133 4.133 24 C -0.064 4.064 25 C -0.208 4.208 26 C -0.218 4.218 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.182 0.818 34 H 0.192 0.808 35 H 0.252 0.748 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.121 -10.106 -13.013 18.369 hybrid contribution 0.223 1.337 0.115 1.360 sum -7.898 -8.769 -12.899 17.483 Atomic orbital electron populations 1.69939 1.07946 1.27613 1.45127 1.26063 0.95564 1.02596 0.94211 0.85248 0.79221 0.78812 0.77154 1.18287 1.21976 1.19907 1.19126 0.94678 0.84997 1.49459 0.90385 1.42955 1.43530 1.08018 1.21599 1.20273 0.82948 0.89262 0.81253 1.90489 1.64593 1.36908 1.54778 1.21311 0.99772 0.97267 0.97484 1.22228 0.94906 0.84120 0.96794 1.85969 1.59232 1.36701 1.42069 1.19083 0.92536 0.94656 0.87592 1.21801 1.03360 0.97061 0.98800 1.21306 0.94055 1.00140 0.94410 1.21572 1.00116 0.90394 1.00577 1.19695 1.00140 0.94897 0.96934 1.18265 0.78743 0.87089 0.80789 1.43493 1.48819 1.18102 1.28331 1.90811 1.65390 1.32839 1.57763 1.20463 0.97886 0.97232 0.97731 1.22059 0.95161 0.90569 0.98606 1.23133 1.03507 1.02157 0.92001 1.23334 0.96697 1.00473 1.01268 0.93084 0.88635 0.87297 0.91761 0.92745 0.85309 0.81765 0.80804 0.74775 0.75203 0.85428 0.85722 0.89931 0.86527 0.85810 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.16 11.74 21.66 0.25 -51.90 16 2 C 0.02 1.23 4.39 84.93 0.37 1.60 16 3 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.36 -19.32 7.91 84.04 0.66 -18.66 16 8 H 0.08 4.12 7.27 -2.91 -0.02 4.10 16 9 N -0.44 -21.80 2.83 -613.12 -1.74 -23.54 16 10 C 0.47 23.71 6.96 87.66 0.61 24.32 16 11 O -0.59 -34.20 13.76 -3.08 -0.04 -34.24 16 12 C -0.12 -4.50 4.69 29.85 0.14 -4.36 16 13 C 0.09 3.46 4.03 71.98 0.29 3.75 16 14 O -0.33 -11.05 10.13 -92.57 -0.94 -11.99 16 15 C 0.11 3.21 6.68 22.47 0.15 3.36 16 16 C -0.19 -4.99 9.03 22.42 0.20 -4.78 16 17 C -0.08 -1.45 10.03 22.22 0.22 -1.23 16 18 C -0.11 -1.60 9.54 22.53 0.21 -1.38 16 19 C -0.11 -2.47 5.87 -20.10 -0.12 -2.58 16 20 C 0.57 11.96 8.05 86.79 0.70 12.66 16 21 N -0.82 -7.96 8.82 -175.59 -1.55 -9.51 16 22 O -0.59 -18.05 17.18 -3.88 -0.07 -18.12 16 23 C -0.11 -3.20 9.53 22.63 0.22 -2.98 16 24 C 0.04 1.56 5.87 44.99 0.26 1.82 16 25 C -0.17 -5.76 9.80 30.62 0.30 -5.46 16 26 C -0.18 -5.59 10.36 30.62 0.32 -5.27 16 27 H 0.26 14.96 8.32 -92.71 -0.77 14.19 16 28 H 0.10 3.43 7.57 -2.39 -0.02 3.42 16 29 H 0.11 3.61 8.11 -2.39 -0.02 3.59 16 30 H 0.06 2.36 7.62 -2.38 -0.02 2.34 16 31 H 0.05 2.15 7.60 -2.39 -0.02 2.13 16 32 H 0.13 3.60 6.28 -2.91 -0.02 3.59 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.17 0.79 6.40 -2.91 -0.02 0.78 16 35 H 0.42 1.03 6.86 -92.70 -0.64 0.40 16 36 H 0.42 2.91 8.93 -92.71 -0.83 2.08 16 37 H 0.13 3.89 7.65 -2.91 -0.02 3.87 16 38 H 0.13 4.16 6.96 -2.39 -0.02 4.15 16 39 H 0.08 3.21 6.73 -2.39 -0.02 3.20 16 40 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -80.54 356.90 2.11 -78.42 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.38 Total: 22.92 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.55 Total: 0.80 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.03 Total: -84.95 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -1.05 Total: -64.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -80.54 2.11 -78.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.351 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds