Wall clock time and date at job start Tue Mar 31 2020 13:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99910 * 2 1 4 4 C 1.52999 * 109.47133 * 299.99941 * 3 2 1 5 5 C 1.53002 * 109.47308 * 60.00530 * 3 2 1 6 6 C 1.50704 * 109.46722 * 180.02562 * 3 2 1 7 7 N 1.29944 * 126.28601 * 125.02569 * 6 3 2 8 8 O 1.21302 * 110.25385 * 179.97438 * 7 6 3 9 9 C 1.33649 * 109.80469 * 359.97438 * 8 7 6 10 10 C 1.50699 * 126.54512 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47060 * 269.97836 * 10 9 8 12 12 C 1.38307 * 119.92851 * 269.72587 * 11 10 9 13 13 C 1.38098 * 120.06719 * 179.72036 * 12 11 10 14 14 C 1.38872 * 119.93193 * 0.57855 * 13 12 11 15 15 O 1.35752 * 120.07478 * 179.67685 * 14 13 12 16 16 C 1.34831 * 117.00336 * 174.48353 * 15 14 13 17 17 H 1.07991 * 119.99702 * 5.05990 * 16 15 14 18 18 C 1.38651 * 119.99919 * 185.05802 * 16 15 14 19 19 N 1.31568 * 120.00011 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47423 * 89.99835 * 20 18 16 22 22 H 1.48494 * 109.47417 * 210.00168 * 20 18 16 23 23 H 1.48507 * 109.47035 * 329.99905 * 20 18 16 24 24 C 1.38882 * 119.86145 * 359.69714 * 14 13 12 25 25 C 1.38104 * 119.92998 * 0.02562 * 24 14 13 26 26 N 1.31126 * 106.89947 * 359.76958 * 9 8 7 27 27 H 1.09005 * 109.47137 * 59.99703 * 1 2 3 28 28 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46991 * 299.99806 * 1 2 3 30 30 H 1.09002 * 109.46806 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47292 * 300.00280 * 4 3 2 32 32 H 1.09000 * 109.46993 * 60.00242 * 4 3 2 33 33 H 1.09003 * 109.46557 * 299.99301 * 5 3 2 34 34 H 1.08997 * 109.47197 * 59.99354 * 5 3 2 35 35 H 1.08997 * 109.46920 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47732 * 29.97656 * 10 9 8 37 37 H 1.09000 * 109.47279 * 149.98331 * 10 9 8 38 38 H 1.08006 * 119.96338 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03145 * 180.27541 * 13 12 11 40 40 H 0.96993 * 119.99902 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03846 * 179.97438 * 24 14 13 42 42 H 1.07997 * 119.96213 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 -1.2492 5 6 1.5589 2.0647 1.2493 6 6 3.5125 1.1864 -0.0006 7 7 4.3263 1.7251 -0.8586 8 8 5.4735 1.4416 -0.5845 9 6 5.5012 0.6723 0.5080 10 6 6.7277 0.1064 1.1762 11 6 7.0449 -1.2428 0.5844 12 6 6.5025 -2.3860 1.1428 13 6 6.7866 -3.6233 0.5993 14 6 7.6275 -3.7200 -0.5017 15 8 7.9139 -4.9354 -1.0342 16 6 8.6426 -4.9504 -2.1686 17 1 9.0395 -4.0287 -2.5676 18 6 8.8821 -6.1491 -2.8229 19 7 8.3980 -7.2719 -2.3371 20 14 9.8921 -6.1701 -4.3941 21 1 11.3269 -6.3531 -4.0579 22 1 9.4396 -7.2894 -5.2586 23 1 9.7128 -4.8841 -5.1150 24 6 8.1751 -2.5707 -1.0566 25 6 7.8825 -1.3357 -0.5121 26 7 4.2577 0.5084 0.8904 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0025 3.0603 -1.2494 31 1 1.8804 1.5238 -2.1393 32 1 0.4722 2.1508 -1.2492 33 1 0.4722 2.1508 1.2493 34 1 1.8805 1.5238 2.1392 35 1 2.0019 3.0606 1.2490 36 1 7.5705 0.7794 1.0186 37 1 6.5426 -0.0001 2.2451 38 1 5.8528 -2.3105 2.0023 39 1 6.3592 -4.5153 1.0331 40 1 8.5653 -8.1104 -2.7950 41 1 8.8297 -2.6426 -1.9126 42 1 8.3084 -0.4417 -0.9429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085236782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:07 Heat of formation + Delta-G solvation = 22.405168 kcal Electronic energy + Delta-G solvation = -25914.172032 eV Core-core repulsion = 22056.964867 eV Total energy + Delta-G solvation = -3857.207165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.51067 -39.28741 -39.12706 -36.94706 -35.68732 -34.01825 -32.53579 -32.02601 -30.36118 -30.19761 -27.84090 -27.49057 -26.61440 -25.17974 -24.37359 -22.75524 -22.01034 -20.86387 -20.05295 -18.17609 -18.00335 -17.81763 -16.98280 -16.41114 -16.00130 -15.51215 -15.05107 -14.68251 -14.65142 -14.43744 -13.78522 -13.71968 -13.61294 -13.47647 -13.11192 -12.81643 -12.76043 -12.55063 -12.35882 -12.24360 -11.90518 -11.79010 -11.67217 -11.57170 -11.34101 -11.21533 -10.95818 -10.91069 -10.81522 -10.67198 -10.46281 -9.98264 -9.75696 -9.38652 -8.88032 -8.23874 -7.28443 -6.49757 -4.08469 1.19631 2.04831 2.18040 2.27610 2.97998 3.10992 3.12335 3.16879 3.24106 3.66976 3.93364 4.16209 4.42535 4.48201 4.67362 4.95815 5.03654 5.04091 5.06743 5.16911 5.17589 5.22898 5.23822 5.27520 5.37712 5.42544 5.47207 5.61256 5.66275 5.72463 5.79689 5.82944 5.91915 6.07174 6.16410 6.36177 6.63704 6.83809 6.86017 6.99158 7.17732 7.27480 7.38530 7.74948 7.95092 8.22909 8.95553 9.64148 10.67867 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002781 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.526902 B =10065.531405 C =10481.551340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.209 3.791 4 C -0.174 4.174 5 C -0.172 4.172 6 C 0.179 3.821 7 N -0.378 5.378 8 O 0.078 5.922 9 C 0.201 3.799 10 C 0.032 3.968 11 C -0.205 4.205 12 C -0.050 4.050 13 C -0.194 4.194 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.236 4.236 25 C -0.054 4.054 26 N -0.468 5.468 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 18.491 6.013 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.284 6.284 3 C 0.167 3.833 4 C -0.232 4.232 5 C -0.230 4.230 6 C -0.094 4.094 7 N -0.086 5.086 8 O 0.019 5.981 9 C -0.019 4.019 10 C -0.007 4.007 11 C -0.207 4.207 12 C -0.068 4.068 13 C -0.213 4.213 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.255 4.255 25 C -0.073 4.073 26 N -0.201 5.201 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.157 18.163 5.603 22.040 hybrid contribution 0.443 0.042 -0.910 1.013 sum -10.714 18.206 4.692 21.639 Atomic orbital electron populations 1.22881 0.80551 1.03356 1.00271 1.88093 1.19969 1.25274 1.95040 1.19255 0.82883 0.84823 0.96303 1.22354 1.02013 1.01361 0.97446 1.22364 1.02118 1.00801 0.97701 1.25068 0.98274 0.96360 0.89748 1.74560 0.89896 1.22551 1.21643 1.85285 1.23211 1.50998 1.38646 1.29215 0.96713 0.90389 0.85615 1.18985 0.88476 0.94507 0.98686 1.18801 1.07499 0.92187 1.02181 1.20532 0.96921 0.91258 0.98135 1.20209 1.04019 0.97741 0.99363 1.19445 0.91672 0.86048 0.92202 1.83979 1.62596 1.23201 1.37805 1.21361 1.30177 0.95546 0.99818 0.88910 1.25318 0.97708 0.94207 0.99247 1.70042 1.42027 0.98296 1.39042 0.85698 0.79255 0.78584 0.79843 1.19781 1.20202 1.19115 1.21138 1.07475 0.92111 1.04822 1.20638 0.95842 0.96767 0.94028 1.71860 1.00291 1.21103 1.26800 0.93545 0.89046 0.93424 0.90671 0.90988 0.90923 0.90847 0.90439 0.91229 0.87995 0.87114 0.86614 0.86309 0.91903 0.85338 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.21 101.05 1.03 1.26 16 2 O -0.37 -4.97 10.33 -35.23 -0.36 -5.33 16 3 C 0.21 2.54 1.10 -91.77 -0.10 2.44 16 4 C -0.17 -1.75 7.75 37.16 0.29 -1.46 16 5 C -0.17 -1.61 8.23 37.16 0.31 -1.30 16 6 C 0.18 2.71 6.78 -156.37 -1.06 1.65 16 7 N -0.38 -5.86 11.48 30.90 0.35 -5.50 16 8 O 0.08 1.18 11.31 18.08 0.20 1.38 16 9 C 0.20 2.90 7.75 -13.06 -0.10 2.80 16 10 C 0.03 0.39 5.97 -29.03 -0.17 0.22 16 11 C -0.20 -3.31 5.12 -104.57 -0.54 -3.85 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.19 -4.09 9.99 -39.40 -0.39 -4.48 16 14 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 15 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 16 C -0.39 -10.90 9.49 30.89 0.29 -10.61 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 20 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 24 C -0.24 -5.02 9.17 -39.39 -0.36 -5.38 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 26 N -0.47 -7.40 11.55 -9.87 -0.11 -7.51 16 27 H 0.05 0.34 6.42 -51.93 -0.33 0.01 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.33 6.42 -51.93 -0.33 0.00 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 33 H 0.07 0.51 6.54 -51.93 -0.34 0.17 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -33.03 358.17 -5.99 -39.02 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.27 Total: 3.17 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.93 Total: -16.73 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 1.00 Total: -37.36 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.16 Total: -8.87 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.03 -5.99 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085236782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.422 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds