Wall clock time and date at job start Tue Mar 31 2020 13:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99910 * 2 1 4 4 C 1.52999 * 109.47133 * 299.99941 * 3 2 1 5 5 C 1.53002 * 109.47308 * 60.00530 * 3 2 1 6 6 C 1.50704 * 109.46722 * 180.02562 * 3 2 1 7 7 N 1.29944 * 126.28601 * 125.02569 * 6 3 2 8 8 O 1.21302 * 110.25385 * 179.97438 * 7 6 3 9 9 C 1.33649 * 109.80469 * 359.97438 * 8 7 6 10 10 C 1.50699 * 126.54512 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47060 * 269.97836 * 10 9 8 12 12 C 1.38307 * 119.92851 * 269.72587 * 11 10 9 13 13 C 1.38098 * 120.06719 * 179.72036 * 12 11 10 14 14 C 1.38872 * 119.93193 * 0.57855 * 13 12 11 15 15 O 1.35752 * 120.07478 * 179.67685 * 14 13 12 16 16 C 1.34831 * 117.00336 * 174.48353 * 15 14 13 17 17 H 1.07991 * 119.99702 * 5.05990 * 16 15 14 18 18 C 1.38651 * 119.99919 * 185.05802 * 16 15 14 19 19 N 1.31568 * 120.00011 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47423 * 89.99835 * 20 18 16 22 22 H 1.48494 * 109.47417 * 210.00168 * 20 18 16 23 23 H 1.48507 * 109.47035 * 329.99905 * 20 18 16 24 24 C 1.38882 * 119.86145 * 359.69714 * 14 13 12 25 25 C 1.38104 * 119.92998 * 0.02562 * 24 14 13 26 26 N 1.31126 * 106.89947 * 359.76958 * 9 8 7 27 27 H 1.09005 * 109.47137 * 59.99703 * 1 2 3 28 28 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46991 * 299.99806 * 1 2 3 30 30 H 1.09002 * 109.46806 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47292 * 300.00280 * 4 3 2 32 32 H 1.09000 * 109.46993 * 60.00242 * 4 3 2 33 33 H 1.09003 * 109.46557 * 299.99301 * 5 3 2 34 34 H 1.08997 * 109.47197 * 59.99354 * 5 3 2 35 35 H 1.08997 * 109.46920 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47732 * 29.97656 * 10 9 8 37 37 H 1.09000 * 109.47279 * 149.98331 * 10 9 8 38 38 H 1.08006 * 119.96338 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03145 * 180.27541 * 13 12 11 40 40 H 0.96993 * 119.99902 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03846 * 179.97438 * 24 14 13 42 42 H 1.07997 * 119.96213 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 -1.2492 5 6 1.5589 2.0647 1.2493 6 6 3.5125 1.1864 -0.0006 7 7 4.3263 1.7251 -0.8586 8 8 5.4735 1.4416 -0.5845 9 6 5.5012 0.6723 0.5080 10 6 6.7277 0.1064 1.1762 11 6 7.0449 -1.2428 0.5844 12 6 6.5025 -2.3860 1.1428 13 6 6.7866 -3.6233 0.5993 14 6 7.6275 -3.7200 -0.5017 15 8 7.9139 -4.9354 -1.0342 16 6 8.6426 -4.9504 -2.1686 17 1 9.0395 -4.0287 -2.5676 18 6 8.8821 -6.1491 -2.8229 19 7 8.3980 -7.2719 -2.3371 20 14 9.8921 -6.1701 -4.3941 21 1 11.3269 -6.3531 -4.0579 22 1 9.4396 -7.2894 -5.2586 23 1 9.7128 -4.8841 -5.1150 24 6 8.1751 -2.5707 -1.0566 25 6 7.8825 -1.3357 -0.5121 26 7 4.2577 0.5084 0.8904 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0025 3.0603 -1.2494 31 1 1.8804 1.5238 -2.1393 32 1 0.4722 2.1508 -1.2492 33 1 0.4722 2.1508 1.2493 34 1 1.8805 1.5238 2.1392 35 1 2.0019 3.0606 1.2490 36 1 7.5705 0.7794 1.0186 37 1 6.5426 -0.0001 2.2451 38 1 5.8528 -2.3105 2.0023 39 1 6.3592 -4.5153 1.0331 40 1 8.5653 -8.1104 -2.7950 41 1 8.8297 -2.6426 -1.9126 42 1 8.3084 -0.4417 -0.9429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085236782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:07 Heat of formation + Delta-G solvation = -0.796093 kcal Electronic energy + Delta-G solvation = -25915.178114 eV Core-core repulsion = 22056.964867 eV Total energy + Delta-G solvation = -3858.213247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.64476 -40.82623 -40.13810 -38.60421 -36.80663 -35.19745 -34.29313 -33.21012 -31.82893 -31.60252 -28.67835 -28.21573 -28.07077 -26.98610 -25.43676 -23.87488 -23.63365 -22.30000 -21.08564 -19.88012 -19.28420 -18.92487 -18.73730 -17.37484 -16.92129 -16.51540 -16.44629 -16.28075 -16.04986 -15.82363 -15.49689 -15.08722 -14.63079 -14.51290 -14.31430 -14.28999 -13.94255 -13.58889 -13.50684 -13.09040 -13.06860 -12.94393 -12.89551 -12.82514 -12.56326 -12.51149 -12.41461 -12.29195 -12.13843 -12.05027 -11.83482 -11.19278 -11.02132 -10.81376 -10.67604 -9.80527 -9.00017 -8.49127 -6.17589 0.06537 0.57770 0.58633 1.11524 1.34472 1.43463 1.52083 1.88282 2.16548 2.31803 2.66827 2.85026 3.14685 3.27268 3.49013 3.62713 3.79133 3.92520 4.03806 4.05652 4.18320 4.35688 4.41688 4.42734 4.48533 4.53271 4.56237 4.57733 4.68992 4.74615 4.78742 4.79736 4.81356 4.97371 5.05123 5.08013 5.13949 5.16374 5.27595 5.53492 5.69152 5.71574 6.00937 6.08693 6.17777 6.95471 7.11420 7.75408 8.74062 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002781 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.526902 B =10065.531405 C =10481.551340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.403 6.403 3 C 0.199 3.801 4 C -0.168 4.168 5 C -0.164 4.164 6 C 0.168 3.832 7 N -0.391 5.391 8 O 0.075 5.925 9 C 0.200 3.800 10 C 0.036 3.964 11 C -0.175 4.175 12 C -0.046 4.046 13 C -0.210 4.210 14 C 0.120 3.880 15 O -0.231 6.231 16 C -0.415 4.415 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.253 1.253 24 C -0.246 4.246 25 C -0.050 4.050 26 N -0.488 5.488 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 22.245 6.565 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.322 6.322 3 C 0.158 3.842 4 C -0.226 4.226 5 C -0.222 4.222 6 C -0.105 4.105 7 N -0.100 5.100 8 O 0.016 5.984 9 C -0.020 4.020 10 C -0.002 4.002 11 C -0.176 4.176 12 C -0.064 4.064 13 C -0.229 4.229 14 C 0.069 3.931 15 O -0.137 6.137 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.266 4.266 25 C -0.068 4.068 26 N -0.221 5.221 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.684 21.982 6.189 25.652 hybrid contribution 0.427 -0.817 -0.848 1.253 sum -11.257 21.165 5.341 24.560 Atomic orbital electron populations 1.23109 0.78439 1.04191 1.01964 1.88027 1.22425 1.26378 1.95391 1.19587 0.81392 0.84929 0.98310 1.22329 1.03817 1.00837 0.95604 1.22327 1.03835 1.00419 0.95648 1.25740 0.99797 0.95752 0.89245 1.74554 0.90156 1.23296 1.22035 1.85259 1.23115 1.51205 1.38799 1.29527 0.96961 0.90181 0.85325 1.19238 0.89094 0.92297 0.99602 1.19294 1.04171 0.93982 1.00194 1.20930 0.96595 0.90279 0.98640 1.20448 1.04054 0.99299 0.99136 1.20001 0.93478 0.86039 0.93558 1.83946 1.65055 1.25626 1.39108 1.21856 1.30526 0.96382 1.00290 0.87879 1.26617 0.98976 0.93472 1.02990 1.70190 1.45084 0.99127 1.41443 0.84585 0.77626 0.79081 0.74929 1.18507 1.19709 1.17665 1.21283 1.07456 0.92906 1.04922 1.21092 0.95339 0.96550 0.93846 1.71870 1.01037 1.21613 1.27547 0.92031 0.88813 0.91439 0.90183 0.93084 0.88144 0.88205 0.91708 0.90440 0.83788 0.84281 0.83593 0.87096 0.91794 0.86066 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 113.37 1.16 1.44 16 2 O -0.40 -10.39 10.33 -148.98 -1.54 -11.93 16 3 C 0.20 4.47 1.10 -11.54 -0.01 4.46 16 4 C -0.17 -3.04 7.75 71.98 0.56 -2.48 16 5 C -0.16 -2.64 8.23 71.98 0.59 -2.05 16 6 C 0.17 4.79 6.78 138.47 0.94 5.73 16 7 N -0.39 -11.40 11.48 -60.31 -0.69 -12.09 16 8 O 0.07 2.04 11.31 74.77 0.85 2.89 16 9 C 0.20 5.08 7.75 88.38 0.68 5.76 16 10 C 0.04 0.68 5.97 29.10 0.17 0.85 16 11 C -0.17 -5.02 5.12 -19.83 -0.10 -5.12 16 12 C -0.05 -1.54 9.69 22.25 0.22 -1.33 16 13 C -0.21 -9.06 9.99 22.39 0.22 -8.84 16 14 C 0.12 6.00 6.65 22.58 0.15 6.15 16 15 O -0.23 -14.04 9.76 -22.77 -0.22 -14.27 16 16 C -0.41 -24.27 9.49 67.92 0.64 -23.63 16 17 H 0.10 5.50 5.20 -2.92 -0.02 5.49 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 19 N -0.92 -57.01 13.67 21.61 0.30 -56.72 16 20 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 24 C -0.25 -10.51 9.17 22.39 0.21 -10.31 16 25 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 26 N -0.49 -14.22 11.55 -303.18 -3.50 -17.72 16 27 H 0.06 0.74 6.42 -2.38 -0.02 0.73 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 0.75 6.42 -2.39 -0.02 0.74 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.19 6.54 -2.39 -0.02 1.18 16 33 H 0.10 1.03 6.54 -2.39 -0.02 1.01 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.14 1.67 8.08 -2.39 -0.02 1.65 16 37 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 42 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -78.90 358.17 4.37 -74.52 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.05 Total: 21.85 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 6.11 Total: -31.61 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.90 Total: -86.53 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.92 Total: -23.31 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.90 4.37 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085236782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.728 kcal (2) G-P(sol) polarization free energy of solvation -78.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds