Wall clock time and date at job start Tue Mar 31 2020 13:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38402 * 119.92438 * 2 1 4 4 C 1.38365 * 120.31016 * 180.02562 * 3 2 1 5 5 C 1.37956 * 120.14880 * 359.78237 * 4 3 2 6 6 N 1.48016 * 120.07618 * 180.25528 * 5 4 3 7 7 O 1.31703 * 119.99840 * 353.39453 * 6 5 4 8 8 O 1.31699 * 119.99956 * 173.38897 * 6 5 4 9 9 C 1.39644 * 119.84412 * 0.47022 * 5 4 3 10 10 C 1.47696 * 120.14765 * 179.78741 * 9 5 4 11 11 O 1.21473 * 120.00348 * 300.58058 * 10 9 5 12 12 N 1.34779 * 119.99646 * 120.58695 * 10 9 5 13 13 C 1.33332 * 119.99980 * 181.57538 * 12 10 9 14 14 H 1.08002 * 120.00463 * 130.06560 * 13 12 10 15 15 C 1.46788 * 119.99918 * 309.79511 * 13 12 10 16 16 N 1.29314 * 120.00233 * 107.87845 * 15 13 12 17 17 Si 1.86804 * 119.99650 * 287.88197 * 15 13 12 18 18 H 1.48500 * 109.46933 * 2.11244 * 17 15 13 19 19 H 1.48503 * 109.47219 * 122.11074 * 17 15 13 20 20 H 1.48500 * 109.47287 * 242.11154 * 17 15 13 21 21 C 1.46496 * 120.00230 * 1.56655 * 12 10 9 22 22 C 1.54259 * 110.03709 * 237.91348 * 21 12 10 23 23 C 1.54970 * 104.16089 * 217.13943 * 22 21 12 24 24 C 1.54890 * 102.77852 * 37.88547 * 23 22 21 25 25 C 1.53885 * 110.02989 * 120.69543 * 21 12 10 26 26 C 1.37906 * 119.92315 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46881 * 274.95118 * 1 2 3 28 28 H 1.08999 * 109.46941 * 34.94494 * 1 2 3 29 29 H 1.08993 * 109.47457 * 154.95264 * 1 2 3 30 30 H 1.08000 * 119.84708 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.92217 * 180.02562 * 4 3 2 32 32 H 0.96998 * 119.99893 * 184.99059 * 16 15 13 33 33 H 1.09000 * 110.01843 * 359.30846 * 21 12 10 34 34 H 1.09006 * 110.48832 * 335.77946 * 22 21 12 35 35 H 1.08993 * 110.49236 * 98.42791 * 22 21 12 36 36 H 1.09001 * 110.71574 * 279.57191 * 23 22 21 37 37 H 1.08999 * 110.92152 * 156.29377 * 23 22 21 38 38 H 1.08995 * 110.48898 * 203.40540 * 24 23 22 39 39 H 1.09002 * 110.59615 * 80.81967 * 24 23 22 40 40 H 1.08996 * 110.02901 * 238.57491 * 25 21 12 41 41 H 1.08997 * 110.02964 * 359.95356 * 25 21 12 42 42 H 1.08006 * 120.07604 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1995 0.0000 4 6 3.5810 1.2088 -0.0005 5 6 4.2819 0.0206 0.0035 6 7 5.7620 0.0324 0.0086 7 8 6.4119 1.1705 -0.1219 8 8 6.4291 -1.0951 0.1437 9 6 3.5918 -1.1934 -0.0019 10 6 4.3354 -2.4694 -0.0024 11 8 5.1068 -2.7226 -0.9060 12 7 4.1580 -3.3531 0.9997 13 6 4.8526 -4.4911 1.0158 14 1 5.3794 -4.7898 1.9101 15 6 4.8965 -5.3411 -0.1802 16 7 5.9810 -5.4167 -0.8803 17 14 3.3854 -6.3136 -0.6908 18 1 2.2676 -6.0165 0.2406 19 1 2.9941 -5.9316 -2.0714 20 1 3.6933 -7.7657 -0.6473 21 6 3.2022 -3.0632 2.0714 22 6 3.9190 -3.0781 3.4372 23 6 2.8843 -3.7114 4.4015 24 6 2.2237 -4.8046 3.5254 25 6 2.1244 -4.1602 2.1274 26 6 2.1949 -1.1952 -0.0005 27 1 -0.3633 0.0887 1.0238 28 1 -0.3633 0.8424 -0.5886 29 1 -0.3634 -0.9309 -0.4350 30 1 1.6537 2.1327 0.0004 31 1 4.1134 2.1484 -0.0001 32 1 5.9890 -5.9200 -1.7095 33 1 2.7376 -2.0915 1.9042 34 1 4.8196 -3.6904 3.3888 35 1 4.1630 -2.0633 3.7512 36 1 2.1482 -2.9719 4.7168 37 1 3.3784 -4.1553 5.2658 38 1 1.2314 -5.0490 3.9041 39 1 2.8483 -5.6973 3.4905 40 1 1.1368 -3.7206 1.9881 41 1 2.3122 -4.9077 1.3566 42 1 1.6549 -2.1306 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088147403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:41 Heat of formation + Delta-G solvation = 41.497360 kcal Electronic energy + Delta-G solvation = -28376.800654 eV Core-core repulsion = 24520.421389 eV Total energy + Delta-G solvation = -3856.379265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.15345 -38.62509 -37.19742 -36.75623 -33.94907 -33.02986 -32.90103 -32.64005 -31.00373 -28.31689 -27.94252 -27.27559 -25.51032 -24.28415 -22.98875 -21.46379 -20.35274 -20.09691 -19.49255 -17.84988 -16.94037 -16.84229 -16.58253 -15.35134 -15.16305 -15.06668 -14.76990 -14.61118 -14.32651 -14.09164 -13.79541 -13.66940 -13.55733 -13.07862 -12.83848 -12.60760 -12.25203 -11.86502 -11.82323 -11.69496 -11.34222 -11.21550 -11.10442 -11.04940 -10.86623 -10.71029 -10.38099 -10.20028 -10.02794 -9.69982 -9.68389 -9.43916 -9.18812 -8.83102 -8.73525 -8.25312 -7.81423 -7.28898 -3.70964 -0.01250 1.27620 1.82418 2.35203 2.78653 2.93956 3.00980 3.51853 3.79488 3.85980 4.06228 4.54472 4.80665 4.89468 4.96638 5.05933 5.09686 5.18330 5.32469 5.45282 5.51545 5.60721 5.62253 5.74305 5.87217 5.88395 5.97415 5.99414 6.00160 6.06760 6.20816 6.24513 6.27107 6.36924 6.42032 6.52499 6.63454 6.69025 6.74207 6.77462 6.84197 7.13399 7.76285 8.04732 8.08009 8.81167 8.99350 9.59878 9.97057 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.006842 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.429709 B = 4091.362510 C = 4897.196706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.056 4.056 5 C 0.004 3.996 6 N -0.015 5.015 7 O -0.306 6.306 8 O -0.147 6.147 9 C -0.052 4.052 10 C 0.454 3.546 11 O -0.513 6.513 12 N -0.395 5.395 13 C -0.338 4.338 14 H 0.104 0.896 15 C 0.129 3.871 16 N -0.641 5.641 17 Si 0.836 3.164 18 H -0.230 1.230 19 H -0.271 1.271 20 H -0.267 1.267 21 C 0.113 3.887 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.146 4.146 26 C -0.109 4.109 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.293 0.707 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 1.811 5.627 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.161 4.161 4 C -0.075 4.075 5 C -0.088 4.088 6 N 0.427 4.573 7 O -0.457 6.457 8 O -0.335 6.335 9 C -0.058 4.058 10 C 0.248 3.752 11 O -0.392 6.392 12 N -0.111 5.111 13 C -0.466 4.466 14 H 0.122 0.878 15 C -0.113 4.113 16 N -0.256 5.256 17 Si 0.655 3.345 18 H -0.155 1.155 19 H -0.196 1.196 20 H -0.192 1.192 21 C 0.010 3.990 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.183 4.183 26 C -0.128 4.128 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.696 1.948 4.976 14.701 hybrid contribution -0.163 -0.279 -0.416 0.527 sum -13.859 1.669 4.560 14.685 Atomic orbital electron populations 1.20817 0.90557 1.03081 1.02575 1.19998 0.96404 0.92821 0.97113 1.20794 0.92328 0.97981 1.04990 1.20799 0.94331 0.96776 0.95571 1.19972 0.77885 0.94952 1.15967 1.49939 1.03510 1.02328 1.01563 1.96111 1.70602 1.15772 1.63200 1.96362 1.69126 1.15253 1.52743 1.20188 0.93803 0.94345 0.97478 1.18245 0.85346 0.82096 0.89468 1.90743 1.37660 1.74905 1.35908 1.42608 1.33000 1.13926 1.21613 1.19607 1.31135 0.96331 0.99521 0.87843 1.27625 0.95583 0.93978 0.94077 1.69474 1.30718 1.18703 1.06743 0.87546 0.86410 0.80618 0.79886 1.15470 1.19578 1.19214 1.22275 0.89860 0.97885 0.89029 1.22688 0.99516 1.00635 0.94065 1.22442 0.97979 0.97842 0.97604 1.22242 0.99728 0.98479 0.94910 1.22827 0.97104 0.99316 0.99077 1.21109 0.91607 0.98334 1.01744 0.90684 0.91231 0.91248 0.84869 0.84014 0.89411 0.90332 0.89700 0.92548 0.92209 0.91970 0.92595 0.91240 0.92673 0.88682 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.06 -0.85 5.87 -104.68 -0.61 -1.46 16 3 C -0.14 -1.93 9.71 -39.47 -0.38 -2.31 16 4 C -0.06 -0.96 9.57 -39.64 -0.38 -1.34 16 5 C 0.00 0.10 6.90 -79.53 -0.55 -0.45 16 6 N -0.02 -0.40 4.98 34.17 0.17 -0.23 16 7 O -0.31 -7.94 19.17 -31.57 -0.61 -8.55 16 8 O -0.15 -4.30 15.76 -39.72 -0.63 -4.93 16 9 C -0.05 -1.11 4.66 -104.97 -0.49 -1.60 16 10 C 0.45 11.27 5.26 -12.40 -0.07 11.21 16 11 O -0.51 -15.01 13.42 -18.32 -0.25 -15.25 16 12 N -0.39 -8.81 2.46 -106.12 -0.26 -9.07 16 13 C -0.34 -7.99 7.76 -13.45 -0.10 -8.10 16 14 H 0.10 2.48 6.78 -52.49 -0.36 2.12 16 15 C 0.13 3.02 4.17 -15.16 -0.06 2.96 16 16 N -0.64 -16.00 13.31 56.00 0.75 -15.25 16 17 Si 0.84 16.37 28.68 -169.99 -4.88 11.49 16 18 H -0.23 -4.12 4.79 56.52 0.27 -3.85 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 21 C 0.11 2.01 2.73 -66.81 -0.18 1.83 16 22 C -0.13 -2.16 6.41 -25.03 -0.16 -2.32 16 23 C -0.12 -1.58 6.91 -24.69 -0.17 -1.75 16 24 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 25 C -0.15 -2.25 6.27 -25.61 -0.16 -2.42 16 26 C -0.11 -1.81 7.19 -39.16 -0.28 -2.09 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.14 2.29 7.59 -52.49 -0.40 1.89 16 32 H 0.29 6.53 8.27 -40.82 -0.34 6.19 16 33 H 0.08 1.35 4.84 -51.93 -0.25 1.10 16 34 H 0.08 1.56 6.32 -51.93 -0.33 1.23 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.66 3.46 -51.93 -0.18 1.48 16 42 H 0.14 2.06 7.83 -52.48 -0.41 1.65 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -31.98 343.34 -9.35 -41.33 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.41 Total: 5.54 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -3.41 Total: -10.27 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.65 Total: -24.55 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.48 Total: -28.73 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -4.88 Total: 11.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.98 -9.35 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.830 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds