Wall clock time and date at job start Tue Mar 31 2020 13:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38402 * 119.92438 * 2 1 4 4 C 1.38365 * 120.31016 * 180.02562 * 3 2 1 5 5 C 1.37956 * 120.14880 * 359.78237 * 4 3 2 6 6 N 1.48016 * 120.07618 * 180.25528 * 5 4 3 7 7 O 1.31703 * 119.99840 * 353.39453 * 6 5 4 8 8 O 1.31699 * 119.99956 * 173.38897 * 6 5 4 9 9 C 1.39644 * 119.84412 * 0.47022 * 5 4 3 10 10 C 1.47696 * 120.14765 * 179.78741 * 9 5 4 11 11 O 1.21473 * 120.00348 * 300.58058 * 10 9 5 12 12 N 1.34779 * 119.99646 * 120.58695 * 10 9 5 13 13 C 1.33332 * 119.99980 * 181.57538 * 12 10 9 14 14 H 1.08002 * 120.00463 * 130.06560 * 13 12 10 15 15 C 1.46788 * 119.99918 * 309.79511 * 13 12 10 16 16 N 1.29314 * 120.00233 * 107.87845 * 15 13 12 17 17 Si 1.86804 * 119.99650 * 287.88197 * 15 13 12 18 18 H 1.48500 * 109.46933 * 2.11244 * 17 15 13 19 19 H 1.48503 * 109.47219 * 122.11074 * 17 15 13 20 20 H 1.48500 * 109.47287 * 242.11154 * 17 15 13 21 21 C 1.46496 * 120.00230 * 1.56655 * 12 10 9 22 22 C 1.54259 * 110.03709 * 237.91348 * 21 12 10 23 23 C 1.54970 * 104.16089 * 217.13943 * 22 21 12 24 24 C 1.54890 * 102.77852 * 37.88547 * 23 22 21 25 25 C 1.53885 * 110.02989 * 120.69543 * 21 12 10 26 26 C 1.37906 * 119.92315 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46881 * 274.95118 * 1 2 3 28 28 H 1.08999 * 109.46941 * 34.94494 * 1 2 3 29 29 H 1.08993 * 109.47457 * 154.95264 * 1 2 3 30 30 H 1.08000 * 119.84708 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.92217 * 180.02562 * 4 3 2 32 32 H 0.96998 * 119.99893 * 184.99059 * 16 15 13 33 33 H 1.09000 * 110.01843 * 359.30846 * 21 12 10 34 34 H 1.09006 * 110.48832 * 335.77946 * 22 21 12 35 35 H 1.08993 * 110.49236 * 98.42791 * 22 21 12 36 36 H 1.09001 * 110.71574 * 279.57191 * 23 22 21 37 37 H 1.08999 * 110.92152 * 156.29377 * 23 22 21 38 38 H 1.08995 * 110.48898 * 203.40540 * 24 23 22 39 39 H 1.09002 * 110.59615 * 80.81967 * 24 23 22 40 40 H 1.08996 * 110.02901 * 238.57491 * 25 21 12 41 41 H 1.08997 * 110.02964 * 359.95356 * 25 21 12 42 42 H 1.08006 * 120.07604 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1995 0.0000 4 6 3.5810 1.2088 -0.0005 5 6 4.2819 0.0206 0.0035 6 7 5.7620 0.0324 0.0086 7 8 6.4119 1.1705 -0.1219 8 8 6.4291 -1.0951 0.1437 9 6 3.5918 -1.1934 -0.0019 10 6 4.3354 -2.4694 -0.0024 11 8 5.1068 -2.7226 -0.9060 12 7 4.1580 -3.3531 0.9997 13 6 4.8526 -4.4911 1.0158 14 1 5.3794 -4.7898 1.9101 15 6 4.8965 -5.3411 -0.1802 16 7 5.9810 -5.4167 -0.8803 17 14 3.3854 -6.3136 -0.6908 18 1 2.2676 -6.0165 0.2406 19 1 2.9941 -5.9316 -2.0714 20 1 3.6933 -7.7657 -0.6473 21 6 3.2022 -3.0632 2.0714 22 6 3.9190 -3.0781 3.4372 23 6 2.8843 -3.7114 4.4015 24 6 2.2237 -4.8046 3.5254 25 6 2.1244 -4.1602 2.1274 26 6 2.1949 -1.1952 -0.0005 27 1 -0.3633 0.0887 1.0238 28 1 -0.3633 0.8424 -0.5886 29 1 -0.3634 -0.9309 -0.4350 30 1 1.6537 2.1327 0.0004 31 1 4.1134 2.1484 -0.0001 32 1 5.9890 -5.9200 -1.7095 33 1 2.7376 -2.0915 1.9042 34 1 4.8196 -3.6904 3.3888 35 1 4.1630 -2.0633 3.7512 36 1 2.1482 -2.9719 4.7168 37 1 3.3784 -4.1553 5.2658 38 1 1.2314 -5.0490 3.9041 39 1 2.8483 -5.6973 3.4905 40 1 1.1368 -3.7206 1.9881 41 1 2.3122 -4.9077 1.3566 42 1 1.6549 -2.1306 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088147403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:33 Heat of formation + Delta-G solvation = 21.015395 kcal Electronic energy + Delta-G solvation = -28377.688819 eV Core-core repulsion = 24520.421389 eV Total energy + Delta-G solvation = -3857.267430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 7.80 seconds Orbital eigenvalues (eV) -42.08871 -39.90494 -38.70494 -37.45720 -36.61068 -35.34695 -33.54079 -33.33643 -32.20846 -29.68269 -29.26195 -28.49400 -27.78253 -25.20766 -24.40031 -23.05640 -21.85263 -21.55909 -21.27107 -19.34438 -18.61156 -17.97546 -17.70588 -17.59432 -17.28734 -16.51373 -16.18444 -15.85097 -15.57963 -15.32779 -15.14307 -14.94493 -14.64431 -14.56475 -14.36764 -14.16181 -13.85558 -13.36094 -12.96646 -12.89621 -12.75373 -12.59652 -12.55823 -12.34687 -12.05693 -11.91027 -11.78910 -11.59365 -11.44033 -11.08408 -10.82873 -10.69889 -10.65765 -10.56993 -10.33605 -9.93984 -9.80384 -9.58730 -5.75371 -1.85486 0.23991 0.73761 0.87756 1.02183 1.40990 1.56541 1.71933 1.88271 2.04986 2.18393 2.85153 3.45465 3.61571 3.67817 3.84166 3.99403 4.09757 4.13093 4.35774 4.45670 4.48925 4.53935 4.55940 4.59098 4.63409 4.72070 4.84107 4.85877 4.92320 4.97388 5.09003 5.13772 5.16767 5.22006 5.31050 5.33958 5.39929 5.44088 5.54251 5.59433 5.72736 5.80320 6.04944 6.15219 6.78012 6.94588 7.41789 7.70628 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.006842 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.429709 B = 4091.362510 C = 4897.196706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.128 4.128 3 C -0.085 4.085 4 C -0.145 4.145 5 C 0.037 3.963 6 N -0.056 5.056 7 O -0.600 6.600 8 O -0.481 6.481 9 C -0.187 4.187 10 C 0.478 3.522 11 O -0.537 6.537 12 N -0.418 5.418 13 C 0.076 3.924 14 H 0.184 0.816 15 C -0.019 4.019 16 N -0.627 5.627 17 Si 0.981 3.019 18 H -0.171 1.171 19 H -0.268 1.268 20 H -0.213 1.213 21 C 0.092 3.908 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.144 4.144 26 C -0.064 4.064 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.098 0.902 32 H 0.340 0.660 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.443 -17.278 9.629 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.165 4.165 5 C -0.075 4.075 6 N 0.259 4.741 7 O -0.680 6.680 8 O -0.576 6.576 9 C -0.196 4.196 10 C 0.279 3.721 11 O -0.414 6.414 12 N -0.125 5.125 13 C -0.082 4.082 14 H 0.200 0.800 15 C -0.260 4.260 16 N -0.243 5.243 17 Si 0.789 3.211 18 H -0.093 1.093 19 H -0.193 1.193 20 H -0.135 1.135 21 C -0.009 4.009 22 C -0.181 4.181 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.181 4.181 26 C -0.082 4.082 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.176 0.824 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.450 -16.805 8.913 29.426 hybrid contribution 2.326 0.916 -0.879 2.650 sum -20.124 -15.889 8.034 26.869 Atomic orbital electron populations 1.20700 0.86877 1.03830 1.03504 1.20022 0.98245 0.91152 1.03596 1.21102 0.90118 1.00026 0.99331 1.20536 0.95959 0.94877 1.05089 1.20175 0.77531 0.96358 1.13417 1.48468 1.02324 0.99268 1.24046 1.95711 1.72612 1.18314 1.81343 1.95768 1.71205 1.18467 1.72195 1.18892 0.94915 0.89785 1.15971 1.18870 0.83802 0.83253 0.86198 1.90710 1.38161 1.75063 1.37489 1.45478 1.31304 1.11715 1.24048 1.24346 0.98125 0.84650 1.01089 0.79962 1.30189 1.03635 0.97359 0.94808 1.69156 1.30553 1.16462 1.08101 0.85444 0.75481 0.78884 0.81278 1.09300 1.19333 1.13476 1.23244 0.88920 1.02994 0.85725 1.22836 1.00061 1.01322 0.93863 1.22458 0.96890 0.98303 0.97176 1.22374 1.02664 0.97838 0.92245 1.23043 0.97689 0.96603 1.00761 1.21064 0.88782 0.99809 0.98585 0.89417 0.90726 0.90128 0.82409 0.88422 0.84418 0.87619 0.90922 0.93419 0.90241 0.89700 0.88424 0.89991 0.87592 0.89451 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 144. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 10.01 71.24 0.71 -0.89 16 2 C -0.13 -3.88 5.87 -19.90 -0.12 -3.99 16 3 C -0.09 -3.08 9.71 22.34 0.22 -2.87 16 4 C -0.14 -7.47 9.57 22.23 0.21 -7.26 16 5 C 0.04 2.26 6.90 36.65 0.25 2.51 16 6 N -0.06 -4.35 4.98 -45.81 -0.23 -4.57 16 7 O -0.60 -50.21 19.17 3.51 0.07 -50.15 16 8 O -0.48 -38.92 15.76 11.31 0.18 -38.74 16 9 C -0.19 -9.30 4.66 -20.09 -0.09 -9.39 16 10 C 0.48 24.14 5.26 86.74 0.46 24.59 16 11 O -0.54 -33.00 13.42 19.04 0.26 -32.74 16 12 N -0.42 -15.20 2.46 -607.95 -1.49 -16.70 16 13 C 0.08 2.46 7.76 86.70 0.67 3.13 16 14 H 0.18 4.83 6.78 -2.91 -0.02 4.81 16 15 C -0.02 -0.59 4.17 87.30 0.36 -0.23 16 16 N -0.63 -23.33 13.31 23.26 0.31 -23.02 16 17 Si 0.98 18.29 28.68 68.60 1.97 20.26 16 18 H -0.17 -1.99 4.79 99.48 0.48 -1.51 16 19 H -0.27 -6.27 7.11 99.48 0.71 -5.57 16 20 H -0.21 -3.06 7.11 99.48 0.71 -2.36 16 21 C 0.09 2.39 2.73 45.72 0.12 2.51 16 22 C -0.14 -3.44 6.41 31.69 0.20 -3.24 16 23 C -0.11 -1.51 6.91 31.91 0.22 -1.29 16 24 C -0.11 -1.11 6.83 31.67 0.22 -0.90 16 25 C -0.14 -2.10 6.27 31.32 0.20 -1.90 16 26 C -0.06 -2.20 7.19 22.54 0.16 -2.04 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 29 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 30 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.10 5.42 7.59 -2.91 -0.02 5.40 16 32 H 0.34 10.65 8.27 -92.71 -0.77 9.88 16 33 H 0.11 3.08 4.84 -2.39 -0.01 3.07 16 34 H 0.07 1.80 6.32 -2.38 -0.02 1.78 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.25 3.46 -2.39 -0.01 1.24 16 42 H 0.16 3.95 7.83 -2.91 -0.02 3.93 16 Total: -1.00 -118.80 343.34 5.68 -113.11 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.83 Total: 33.79 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 3.80 Total: -1.25 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -1.41 Total: -44.29 kcal Atomic # 8 Polarization: -122.13 SS G_CDS: 0.50 Total: -121.62 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: 1.97 Total: 20.26 kcal Total: -118.80 5.68 -113.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.130 kcal (2) G-P(sol) polarization free energy of solvation -118.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.80 seconds