Wall clock time and date at job start Tue Mar 31 2020 13:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35996 * 117.00051 * 2 1 4 4 C 1.38467 * 120.00615 * 0.02562 * 3 2 1 5 5 C 1.38498 * 120.33564 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.82875 * 179.97438 * 5 4 3 7 7 C 1.37795 * 120.34517 * 0.02562 * 5 4 3 8 8 C 1.39766 * 119.99854 * 359.97438 * 7 5 4 9 9 C 1.47541 * 120.16604 * 180.02562 * 8 7 5 10 10 O 1.21586 * 120.00246 * 235.03660 * 9 8 7 11 11 N 1.34777 * 119.99918 * 55.03312 * 9 8 7 12 12 C 1.46506 * 120.00172 * 185.55815 * 11 9 8 13 13 C 1.50706 * 109.46759 * 89.99879 * 12 11 9 14 14 H 1.07992 * 120.00233 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99629 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99785 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46854 * 60.00481 * 17 15 13 19 19 H 1.48493 * 109.47238 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47105 * 300.00572 * 17 15 13 21 21 C 1.46499 * 120.00080 * 5.56048 * 11 9 8 22 22 C 1.53002 * 109.47065 * 94.96534 * 21 11 9 23 23 C 1.47199 * 109.47337 * 179.97438 * 22 21 11 24 24 N 7.09306 * 111.92704 * 52.65989 * 2 1 3 25 25 C 1.39141 * 120.00222 * 180.02562 * 3 2 1 26 26 O 1.35743 * 120.17026 * 359.96271 * 25 3 2 27 27 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46953 * 299.99900 * 1 2 3 29 29 H 1.08996 * 109.47408 * 59.99788 * 1 2 3 30 30 H 1.07998 * 119.83302 * 359.74694 * 4 3 2 31 31 H 1.08998 * 109.46815 * 90.00943 * 6 5 4 32 32 H 1.09001 * 109.47188 * 210.00228 * 6 5 4 33 33 H 1.08995 * 109.47196 * 330.00788 * 6 5 4 34 34 H 1.07995 * 120.00028 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47582 * 210.00421 * 12 11 9 36 36 H 1.09007 * 109.46788 * 330.00686 * 12 11 9 37 37 H 0.97001 * 120.00327 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.47344 * 214.96529 * 21 11 9 39 39 H 1.08995 * 109.46985 * 334.96796 * 21 11 9 40 40 H 1.09003 * 109.47440 * 300.00288 * 22 21 11 41 41 H 1.09010 * 109.47147 * 59.99843 * 22 21 11 42 42 H 0.96706 * 114.00560 * 89.99281 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2924 2.3731 0.0005 5 6 1.9141 3.6107 0.0000 6 6 1.0823 4.8674 0.0000 7 6 3.2892 3.6990 -0.0016 8 6 4.0642 2.5359 -0.0021 9 6 5.5368 2.6261 -0.0033 10 8 6.1799 2.0610 -0.8667 11 7 6.1692 3.3350 0.9527 12 6 7.6201 3.5266 0.8836 13 6 7.9246 4.7810 0.1059 14 1 7.1182 5.3762 -0.2962 15 6 9.2328 5.1693 -0.0912 16 7 10.2148 4.4448 0.3990 17 14 9.6104 6.7246 -1.0545 18 1 8.9886 7.8901 -0.3763 19 1 11.0809 6.9188 -1.1247 20 1 9.0617 6.6011 -2.4289 21 6 5.4059 3.9141 2.0610 22 6 5.4405 2.9606 3.2571 23 6 4.6741 3.5426 4.3709 24 7 4.0778 3.9910 5.2314 25 6 3.4359 1.2846 -0.0005 26 8 4.1787 0.1484 -0.0003 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2141 2.3136 -0.0032 31 1 0.8824 5.1706 1.0277 32 1 1.6237 5.6614 -0.5142 33 1 0.1394 4.6790 -0.5133 34 1 3.7682 4.6669 -0.0024 35 1 8.0230 3.6175 1.8923 36 1 8.0762 2.6708 0.3859 37 1 11.1352 4.7178 0.2600 38 1 5.8463 4.8697 2.3453 39 1 4.3730 4.0684 1.7491 40 1 5.0001 2.0049 2.9728 41 1 6.4736 2.8062 3.5689 42 1 4.3935 -0.1814 -0.8836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094037385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:32 Heat of formation + Delta-G solvation = -59.823071 kcal Electronic energy + Delta-G solvation = -26904.352728 eV Core-core repulsion = 23043.579879 eV Total energy + Delta-G solvation = -3860.772849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75886 -39.19499 -37.53188 -36.95002 -36.64809 -35.15879 -32.92071 -31.86112 -30.79479 -30.54529 -27.98518 -27.31220 -26.22262 -24.26891 -23.78191 -22.24622 -21.61757 -19.12150 -18.13115 -17.76051 -17.25998 -16.80601 -16.41421 -16.14954 -15.99408 -15.63031 -15.29307 -14.66515 -14.43490 -14.29837 -13.98705 -13.86462 -13.70419 -13.57010 -13.05088 -12.75626 -12.59004 -12.34966 -12.25629 -12.17330 -12.07588 -11.91775 -11.70009 -11.41119 -11.28123 -11.04318 -10.96218 -10.73606 -10.63793 -10.57343 -10.21209 -9.74009 -9.20197 -8.74038 -8.47204 -8.15735 -7.84446 -6.09210 -4.14505 0.91030 1.21341 2.76969 2.88509 2.97120 3.15877 3.29642 3.34746 3.37143 3.58922 3.72851 4.19505 4.26998 4.40604 4.56665 4.75860 4.83177 4.89992 4.97535 5.11426 5.14721 5.22075 5.23390 5.26647 5.28454 5.43831 5.48036 5.58904 5.61106 5.85466 5.89584 5.96989 6.11963 6.17867 6.37616 6.47768 6.94331 7.08925 7.36027 7.41848 7.65653 7.80470 7.86251 8.15675 8.21788 8.77940 8.93826 9.50872 10.98803 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.004140 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.655047 B = 6762.059151 C = 7244.096570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.100 3.900 4 C -0.186 4.186 5 C -0.061 4.061 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.100 4.100 9 C 0.563 3.437 10 O -0.524 6.524 11 N -0.587 5.587 12 C 0.244 3.756 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.108 3.892 22 C -0.050 4.050 23 C 0.220 3.780 24 N -0.449 5.449 25 C 0.114 3.886 26 O -0.478 6.478 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.265 0.735 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 -4.654 -0.008 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.054 3.946 4 C -0.205 4.205 5 C -0.061 4.061 6 C -0.171 4.171 7 C -0.132 4.132 8 C -0.104 4.104 9 C 0.349 3.651 10 O -0.400 6.400 11 N -0.317 5.317 12 C 0.126 3.874 13 C -0.571 4.571 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.018 4.018 22 C -0.091 4.091 23 C -0.098 4.098 24 N -0.126 5.126 25 C 0.067 3.933 26 O -0.288 6.288 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -19.749 -4.442 1.438 20.293 hybrid contribution 0.289 0.761 -1.321 1.552 sum -19.460 -3.682 0.116 19.805 Atomic orbital electron populations 1.23074 0.78662 1.03945 1.01250 1.86164 1.21007 1.26033 1.88752 1.19252 0.91350 0.84913 0.99082 1.21061 0.99894 0.91311 1.08278 1.19595 0.93545 0.94700 0.98264 1.20809 0.99077 0.94534 1.02675 1.21048 0.92710 0.97857 1.01602 1.20433 0.95175 0.92632 1.02149 1.17791 0.85573 0.79270 0.82505 1.90774 1.66804 1.45379 1.37077 1.48090 1.10799 1.50864 1.21950 1.19402 0.72046 0.98005 0.97952 1.21372 0.92213 1.08463 1.35010 0.92373 1.24907 0.96053 0.97234 0.95658 1.69909 0.99496 1.38498 1.45146 0.86577 0.77197 0.83138 0.80636 1.20219 1.21179 1.20174 1.21537 0.98049 0.96461 0.85731 1.19856 1.00152 1.00056 0.89043 1.29221 0.93238 0.93237 0.94078 1.81300 1.10539 1.09487 1.11298 1.17559 0.85868 0.85941 1.03972 1.84743 1.71567 1.38669 1.33822 0.88215 0.92668 0.92713 0.85036 0.90793 0.90914 0.91525 0.84396 0.94485 0.93255 0.92561 0.88869 0.89796 0.87403 0.86477 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.64 10.28 -34.28 -0.35 -4.00 16 3 C 0.10 1.28 6.69 -39.16 -0.26 1.02 16 4 C -0.19 -2.01 8.68 -39.40 -0.34 -2.35 16 5 C -0.06 -0.67 5.87 -104.69 -0.61 -1.29 16 6 C -0.11 -0.94 10.00 36.01 0.36 -0.58 16 7 C -0.11 -1.52 7.11 -39.17 -0.28 -1.80 16 8 C -0.10 -1.58 4.91 -104.87 -0.51 -2.10 16 9 C 0.56 11.13 6.78 -12.47 -0.08 11.05 16 10 O -0.52 -12.44 16.35 3.07 0.05 -12.39 16 11 N -0.59 -11.28 2.46 -176.28 -0.43 -11.71 16 12 C 0.24 5.85 5.23 -5.19 -0.03 5.83 16 13 C -0.53 -14.08 9.39 -34.44 -0.32 -14.41 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.11 1.59 5.19 -4.04 -0.02 1.57 16 22 C -0.05 -0.63 6.02 -29.52 -0.18 -0.81 16 23 C 0.22 3.01 15.44 -20.67 -0.32 2.69 16 24 N -0.45 -7.09 18.56 42.27 0.78 -6.30 16 25 C 0.11 1.71 6.72 -38.58 -0.26 1.45 16 26 O -0.48 -7.36 12.51 -38.51 -0.48 -7.84 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.13 1.05 6.27 -52.49 -0.33 0.72 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.14 1.79 7.58 -52.49 -0.40 1.39 16 35 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.05 1.35 7.35 -51.92 -0.38 0.97 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 39 H 0.08 1.11 4.42 -51.93 -0.23 0.88 16 40 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 42 H 0.39 4.92 9.06 45.56 0.41 5.33 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.84 368.62 -5.77 -39.61 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.64 Total: 2.61 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.97 Total: 3.11 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 1.09 Total: -42.62 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.78 Total: -24.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.84 -5.77 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094037385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.210 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds