Wall clock time and date at job start Tue Mar 31 2020 13:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35996 * 117.00051 * 2 1 4 4 C 1.38467 * 120.00615 * 0.02562 * 3 2 1 5 5 C 1.38498 * 120.33564 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.82875 * 179.97438 * 5 4 3 7 7 C 1.37795 * 120.34517 * 0.02562 * 5 4 3 8 8 C 1.39766 * 119.99854 * 359.97438 * 7 5 4 9 9 C 1.47541 * 120.16604 * 180.02562 * 8 7 5 10 10 O 1.21586 * 120.00246 * 235.03660 * 9 8 7 11 11 N 1.34777 * 119.99918 * 55.03312 * 9 8 7 12 12 C 1.46506 * 120.00172 * 185.55815 * 11 9 8 13 13 C 1.50706 * 109.46759 * 89.99879 * 12 11 9 14 14 H 1.07992 * 120.00233 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99629 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99785 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46854 * 60.00481 * 17 15 13 19 19 H 1.48493 * 109.47238 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47105 * 300.00572 * 17 15 13 21 21 C 1.46499 * 120.00080 * 5.56048 * 11 9 8 22 22 C 1.53002 * 109.47065 * 94.96534 * 21 11 9 23 23 C 1.47199 * 109.47337 * 179.97438 * 22 21 11 24 24 N 7.09306 * 111.92704 * 52.65989 * 2 1 3 25 25 C 1.39141 * 120.00222 * 180.02562 * 3 2 1 26 26 O 1.35743 * 120.17026 * 359.96271 * 25 3 2 27 27 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46953 * 299.99900 * 1 2 3 29 29 H 1.08996 * 109.47408 * 59.99788 * 1 2 3 30 30 H 1.07998 * 119.83302 * 359.74694 * 4 3 2 31 31 H 1.08998 * 109.46815 * 90.00943 * 6 5 4 32 32 H 1.09001 * 109.47188 * 210.00228 * 6 5 4 33 33 H 1.08995 * 109.47196 * 330.00788 * 6 5 4 34 34 H 1.07995 * 120.00028 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47582 * 210.00421 * 12 11 9 36 36 H 1.09007 * 109.46788 * 330.00686 * 12 11 9 37 37 H 0.97001 * 120.00327 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.47344 * 214.96529 * 21 11 9 39 39 H 1.08995 * 109.46985 * 334.96796 * 21 11 9 40 40 H 1.09003 * 109.47440 * 300.00288 * 22 21 11 41 41 H 1.09010 * 109.47147 * 59.99843 * 22 21 11 42 42 H 0.96706 * 114.00560 * 89.99281 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2924 2.3731 0.0005 5 6 1.9141 3.6107 0.0000 6 6 1.0823 4.8674 0.0000 7 6 3.2892 3.6990 -0.0016 8 6 4.0642 2.5359 -0.0021 9 6 5.5368 2.6261 -0.0033 10 8 6.1799 2.0610 -0.8667 11 7 6.1692 3.3350 0.9527 12 6 7.6201 3.5266 0.8836 13 6 7.9246 4.7810 0.1059 14 1 7.1182 5.3762 -0.2962 15 6 9.2328 5.1693 -0.0912 16 7 10.2148 4.4448 0.3990 17 14 9.6104 6.7246 -1.0545 18 1 8.9886 7.8901 -0.3763 19 1 11.0809 6.9188 -1.1247 20 1 9.0617 6.6011 -2.4289 21 6 5.4059 3.9141 2.0610 22 6 5.4405 2.9606 3.2571 23 6 4.6741 3.5426 4.3709 24 7 4.0778 3.9910 5.2314 25 6 3.4359 1.2846 -0.0005 26 8 4.1787 0.1484 -0.0003 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2141 2.3136 -0.0032 31 1 0.8824 5.1706 1.0277 32 1 1.6237 5.6614 -0.5142 33 1 0.1394 4.6790 -0.5133 34 1 3.7682 4.6669 -0.0024 35 1 8.0230 3.6175 1.8923 36 1 8.0762 2.6708 0.3859 37 1 11.1352 4.7178 0.2600 38 1 5.8463 4.8697 2.3453 39 1 4.3730 4.0684 1.7491 40 1 5.0001 2.0049 2.9728 41 1 6.4736 2.8062 3.5689 42 1 4.3935 -0.1814 -0.8836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094037385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:31 Heat of formation + Delta-G solvation = -82.192162 kcal Electronic energy + Delta-G solvation = -26905.322725 eV Core-core repulsion = 23043.579879 eV Total energy + Delta-G solvation = -3861.742845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84719 -40.47038 -38.58979 -38.08718 -37.81232 -36.67673 -34.86243 -32.87435 -32.21605 -31.55688 -29.11937 -28.61303 -27.08411 -25.61616 -25.38698 -23.47969 -22.71310 -20.39405 -19.30547 -18.94732 -18.48718 -18.26138 -17.84014 -17.36419 -17.13072 -16.91101 -16.32004 -16.20082 -15.72070 -15.57356 -15.11902 -14.90919 -14.85791 -14.47325 -14.33867 -14.09734 -13.77809 -13.65082 -13.54392 -13.30230 -13.14705 -12.94316 -12.83255 -12.76634 -12.66024 -12.51390 -12.19437 -12.16860 -12.01718 -11.76928 -11.68715 -11.68359 -10.73538 -10.57334 -9.79983 -9.50644 -9.10844 -8.16751 -6.29883 -0.13909 0.23734 1.42476 1.45523 1.52304 1.56268 1.75430 1.81856 2.05762 2.39073 2.45425 2.53150 3.04903 3.15154 3.21677 3.57174 3.78221 3.98641 4.06540 4.08805 4.16251 4.30887 4.37776 4.43698 4.47831 4.61283 4.73985 4.74810 4.81156 4.89341 4.96434 5.00099 5.05264 5.15205 5.22504 5.33276 5.48360 5.57672 5.62550 5.85299 6.11520 6.26149 6.52363 6.63086 6.77120 6.78705 7.25956 7.43246 8.90278 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.004140 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.655047 B = 6762.059151 C = 7244.096570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.101 3.899 4 C -0.173 4.173 5 C -0.050 4.050 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.116 4.116 9 C 0.560 3.440 10 O -0.577 6.577 11 N -0.587 5.587 12 C 0.259 3.741 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.926 5.926 17 Si 0.961 3.039 18 H -0.261 1.261 19 H -0.283 1.283 20 H -0.278 1.278 21 C 0.107 3.893 22 C -0.038 4.038 23 C 0.245 3.755 24 N -0.478 5.478 25 C 0.091 3.909 26 O -0.495 6.495 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.037 0.963 36 H 0.006 0.994 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 -3.352 0.116 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.055 3.945 4 C -0.192 4.192 5 C -0.050 4.050 6 C -0.170 4.170 7 C -0.140 4.140 8 C -0.120 4.120 9 C 0.348 3.652 10 O -0.458 6.458 11 N -0.316 5.316 12 C 0.138 3.862 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.204 1.204 21 C -0.017 4.017 22 C -0.079 4.079 23 C -0.072 4.072 24 N -0.156 5.156 25 C 0.045 3.955 26 O -0.306 6.306 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -23.069 -3.126 1.595 23.334 hybrid contribution 1.183 0.274 -1.374 1.834 sum -21.885 -2.852 0.221 22.072 Atomic orbital electron populations 1.23436 0.76092 1.05770 1.02667 1.86148 1.23656 1.25707 1.88503 1.19246 0.90586 0.86146 0.98528 1.21458 1.01556 0.90188 1.05948 1.19932 0.92673 0.96292 0.96143 1.20904 0.99462 0.92840 1.03822 1.21118 0.93836 0.96843 1.02223 1.20060 0.92394 0.94213 1.05321 1.18434 0.87398 0.77963 0.81392 1.90727 1.68495 1.47515 1.39031 1.47959 1.09315 1.51034 1.23269 1.18894 0.74904 0.95420 0.96935 1.21697 0.92409 1.09056 1.35013 0.92389 1.25747 0.95989 1.00348 0.96605 1.70028 0.99814 1.40193 1.46476 0.85571 0.77083 0.79809 0.78987 1.18552 1.20829 1.20358 1.21720 0.98465 0.96561 0.84994 1.19728 1.00510 0.99767 0.87898 1.29091 0.92353 0.92288 0.93498 1.81331 1.11651 1.10450 1.12210 1.17742 0.87076 0.85304 1.05410 1.84699 1.72119 1.39163 1.34649 0.86474 0.91285 0.91049 0.81435 0.89543 0.90720 0.89232 0.84354 0.94474 0.97629 0.92508 0.88876 0.87731 0.86450 0.85958 0.74255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -7.11 10.28 -79.59 -0.82 -7.92 16 3 C 0.10 2.41 6.69 22.54 0.15 2.56 16 4 C -0.17 -3.10 8.68 22.39 0.19 -2.91 16 5 C -0.05 -0.95 5.87 -19.91 -0.12 -1.07 16 6 C -0.11 -1.38 10.00 71.24 0.71 -0.66 16 7 C -0.12 -3.08 7.11 22.53 0.16 -2.92 16 8 C -0.12 -3.70 4.91 -20.02 -0.10 -3.80 16 9 C 0.56 23.09 6.78 86.70 0.59 23.67 16 10 O -0.58 -29.21 16.35 -1.86 -0.03 -29.24 16 11 N -0.59 -23.26 2.46 -829.89 -2.04 -25.30 16 12 C 0.26 12.97 5.23 85.63 0.45 13.42 16 13 C -0.54 -29.45 9.39 25.60 0.24 -29.21 16 14 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.69 5.46 84.66 0.46 1.15 16 16 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.11 3.11 5.19 86.38 0.45 3.56 16 22 C -0.04 -0.93 6.02 28.79 0.17 -0.76 16 23 C 0.24 6.35 15.44 89.41 1.38 7.73 16 24 N -0.48 -14.44 18.56 20.04 0.37 -14.07 16 25 C 0.09 2.74 6.72 22.92 0.15 2.90 16 26 O -0.50 -15.88 12.51 -71.95 -0.90 -16.78 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 30 H 0.17 1.77 6.27 -2.91 -0.02 1.75 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.14 3.42 7.58 -2.91 -0.02 3.40 16 35 H 0.04 1.83 8.07 -2.39 -0.02 1.82 16 36 H 0.01 0.33 7.35 -2.38 -0.02 0.31 16 37 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 39 H 0.10 2.64 4.42 -2.39 -0.01 2.63 16 40 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 42 H 0.40 10.82 9.06 -74.05 -0.67 10.15 16 Total: -1.00 -76.13 368.62 5.30 -70.83 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.40 Total: 15.88 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.01 Total: 14.94 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -1.38 Total: -93.00 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -1.75 Total: -53.95 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.13 5.30 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094037385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.359 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds