Wall clock time and date at job start Tue Mar 31 2020 13:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37973 * 120.07218 * 2 1 4 4 C 1.38342 * 120.14302 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29102 * 0.02562 * 4 3 2 6 6 N 1.48013 * 119.92582 * 180.02562 * 5 4 3 7 7 O 1.21796 * 120.00109 * 5.17557 * 6 5 4 8 8 O 1.21802 * 119.99797 * 185.17353 * 6 5 4 9 9 C 1.37935 * 120.14637 * 359.97438 * 5 4 3 10 10 C 1.39557 * 120.07005 * 179.72392 * 2 1 3 11 11 C 1.47844 * 120.14603 * 359.97438 * 10 2 1 12 12 O 1.21556 * 120.00220 * 58.77087 * 11 10 2 13 13 N 1.34781 * 119.99946 * 238.76870 * 11 10 2 14 14 C 1.46500 * 119.99879 * 355.55988 * 13 11 10 15 15 C 1.50691 * 109.47564 * 90.00026 * 14 13 11 16 16 H 1.08005 * 119.99477 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00568 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00174 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47284 * 89.99922 * 19 17 15 21 21 H 1.48505 * 109.47083 * 210.00065 * 19 17 15 22 22 H 1.48499 * 109.47091 * 329.99463 * 19 17 15 23 23 C 1.46496 * 120.00258 * 175.56256 * 13 11 10 24 24 C 1.53000 * 109.47398 * 94.79456 * 23 13 11 25 25 C 1.53001 * 117.50067 * 243.72501 * 24 23 13 26 26 C 1.53001 * 117.49930 * 175.06509 * 24 23 13 27 27 H 1.08994 * 109.47150 * 85.52827 * 1 2 3 28 28 H 1.08997 * 109.47152 * 325.52382 * 1 2 3 29 29 H 1.09005 * 109.46923 * 205.52718 * 1 2 3 30 30 H 1.07996 * 119.92836 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.85405 * 180.02562 * 4 3 2 32 32 H 1.08007 * 120.07525 * 180.02562 * 9 5 4 33 33 H 1.09008 * 109.47208 * 210.00412 * 14 13 11 34 34 H 1.09007 * 109.47246 * 329.99707 * 14 13 11 35 35 H 0.97001 * 120.00207 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.47256 * 214.80331 * 23 13 11 37 37 H 1.09007 * 109.46910 * 334.79374 * 23 13 11 38 38 H 1.08997 * 115.54739 * 29.39889 * 24 23 13 39 39 H 1.09001 * 117.49811 * 0.02562 * 25 24 23 40 40 H 1.09001 * 117.49519 * 145.02307 * 25 24 23 41 41 H 1.09000 * 117.49806 * 214.98500 * 26 24 23 42 42 H 1.08998 * 117.49608 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 7 5.7614 0.0130 0.0017 7 8 6.3623 1.0680 0.0978 8 8 6.3784 -1.0329 -0.0934 9 6 3.6023 -1.1989 0.0005 10 6 2.2063 -1.2077 0.0058 11 6 1.4719 -2.4909 0.0126 12 8 0.6960 -2.7518 -0.8860 13 7 1.6628 -3.3713 1.0150 14 6 2.6684 -3.1012 2.0456 15 6 2.0345 -2.3345 3.1774 16 1 0.9870 -2.0748 3.1337 17 6 2.7915 -1.9646 4.2688 18 7 4.0670 -2.2804 4.3218 19 14 2.0053 -1.0148 5.6721 20 1 1.4722 -1.9684 6.6778 21 1 3.0228 -0.1406 6.3094 22 1 0.8962 -0.1800 5.1447 23 6 0.8649 -4.5984 1.0741 24 6 1.6350 -5.7403 0.4079 25 6 1.0270 -6.3628 -0.8505 26 6 1.0177 -7.1389 0.4688 27 1 -0.3633 0.0801 -1.0245 28 1 -0.3633 0.8471 0.5817 29 1 -0.3633 -0.9274 0.4429 30 1 1.6585 2.1293 0.0004 31 1 4.1183 2.1330 0.0010 32 1 4.1494 -2.1302 0.0010 33 1 3.0648 -4.0441 2.4225 34 1 3.4791 -2.5119 1.6167 35 1 4.5995 -2.0204 5.0898 36 1 0.6662 -4.8529 2.1152 37 1 -0.0792 -4.4434 0.5516 38 1 2.7214 -5.6670 0.4587 39 1 0.0784 -5.9586 -1.2041 40 1 1.7134 -6.6995 -1.6275 41 1 1.6979 -7.9858 0.5594 42 1 0.0626 -7.2454 0.9832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:54 Heat of formation + Delta-G solvation = 10.894295 kcal Electronic energy + Delta-G solvation = -27392.349421 eV Core-core repulsion = 23534.643107 eV Total energy + Delta-G solvation = -3857.706313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85140 -40.23883 -38.44248 -36.95557 -36.22096 -34.98558 -33.17303 -32.61784 -31.50351 -28.52035 -27.90676 -26.56021 -24.86766 -23.87157 -22.84480 -22.15098 -21.78205 -20.59975 -19.66955 -18.39458 -18.02846 -17.18394 -16.69300 -16.59161 -15.99643 -15.64947 -15.55071 -14.90293 -14.58987 -14.26103 -14.04138 -13.75593 -13.31632 -13.24494 -12.61668 -12.31671 -12.24773 -12.12601 -11.95528 -11.67249 -11.51062 -11.35756 -11.32494 -11.20805 -11.04828 -10.87634 -10.84157 -10.80239 -10.41454 -10.21953 -9.86847 -9.72645 -9.47300 -9.12558 -8.99790 -8.63537 -7.95831 -6.28961 -4.37021 0.15439 0.99443 1.62078 1.72930 2.96248 3.13896 3.22090 3.22899 3.36842 3.71117 4.05552 4.21953 4.53305 4.66068 4.71905 4.91427 4.98696 5.04320 5.07428 5.15459 5.23598 5.31329 5.55913 5.62111 5.67330 5.68810 5.78269 5.85477 5.90724 5.96510 6.06306 6.06374 6.10091 6.28483 6.34188 6.42658 6.44238 6.60448 6.75124 6.98360 7.28979 7.62739 7.90227 7.99256 8.03893 8.56030 8.72490 9.30315 10.77701 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008506 B = 0.006145 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.946484 B = 4555.815645 C = 5672.561180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.011 3.989 3 C -0.127 4.127 4 C -0.043 4.043 5 C -0.053 4.053 6 N 0.037 4.963 7 O -0.173 6.173 8 O -0.159 6.159 9 C -0.004 4.004 10 C -0.096 4.096 11 C 0.563 3.437 12 O -0.554 6.554 13 N -0.580 5.580 14 C 0.226 3.774 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.150 3.850 24 C -0.163 4.163 25 C -0.175 4.175 26 C -0.178 4.178 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 1.523 -7.856 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.010 3.990 3 C -0.146 4.146 4 C -0.063 4.063 5 C -0.136 4.136 6 N 0.556 4.444 7 O -0.387 6.387 8 O -0.376 6.376 9 C -0.024 4.024 10 C -0.100 4.100 11 C 0.349 3.651 12 O -0.434 6.434 13 N -0.309 5.309 14 C 0.107 3.893 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.027 3.973 24 C -0.182 4.182 25 C -0.212 4.212 26 C -0.216 4.216 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.409 1.386 -8.158 10.467 hybrid contribution 0.372 0.484 1.179 1.328 sum -6.037 1.870 -6.979 9.415 Atomic orbital electron populations 1.20934 0.89515 1.04016 1.03164 1.20238 0.97284 0.91399 0.90082 1.20891 0.92386 0.98336 1.02998 1.21012 0.94581 0.96866 0.93812 1.20816 0.79163 0.96734 1.16856 1.43503 1.03584 1.00270 0.97084 1.94478 1.69826 1.20534 1.53828 1.94544 1.68436 1.21586 1.53080 1.20992 0.93477 0.97427 0.90498 1.19667 0.92112 0.94687 1.03514 1.17891 0.81926 0.83022 0.82228 1.90726 1.38223 1.77801 1.36653 1.48179 1.38539 1.18700 1.25469 1.19741 0.86408 0.97948 0.85195 1.21372 0.96678 1.36615 1.03121 0.92098 1.24932 0.94743 0.95740 0.98256 1.69908 1.06067 1.45542 1.30650 0.86556 0.79147 0.79995 0.82219 1.20311 1.20955 1.19759 1.20931 0.93367 0.82129 1.00897 1.22762 1.00171 0.93823 1.01424 1.22982 1.02842 1.04157 0.91212 1.22917 1.02634 0.94728 1.01303 0.89709 0.90621 0.90433 0.83491 0.83145 0.82677 0.93916 0.94069 0.92304 0.89686 0.90440 0.87664 0.88732 0.89399 0.89031 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.35 36.01 0.34 -1.27 16 2 C 0.01 0.17 5.91 -104.22 -0.62 -0.44 16 3 C -0.13 -1.68 9.71 -39.64 -0.38 -2.06 16 4 C -0.04 -0.63 9.55 -39.49 -0.38 -1.01 16 5 C -0.05 -0.93 6.84 -80.01 -0.55 -1.47 16 6 N 0.04 0.71 4.45 33.93 0.15 0.86 16 7 O -0.17 -3.22 18.45 -29.46 -0.54 -3.76 16 8 O -0.16 -3.19 18.45 -29.46 -0.54 -3.74 16 9 C 0.00 -0.08 7.18 -39.19 -0.28 -0.36 16 10 C -0.10 -1.75 5.00 -104.97 -0.52 -2.27 16 11 C 0.56 10.89 5.90 -12.33 -0.07 10.81 16 12 O -0.55 -11.19 15.85 5.32 0.08 -11.10 16 13 N -0.58 -11.37 2.46 -176.17 -0.43 -11.80 16 14 C 0.23 5.12 4.94 -5.20 -0.03 5.09 16 15 C -0.54 -13.39 9.38 -34.45 -0.32 -13.72 16 16 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -24.11 13.29 55.43 0.74 -23.37 16 19 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.15 2.56 5.71 -4.04 -0.02 2.54 16 24 C -0.16 -2.49 6.01 -90.62 -0.54 -3.03 16 25 C -0.17 -2.36 10.18 -26.69 -0.27 -2.63 16 26 C -0.18 -2.23 10.25 -26.69 -0.27 -2.50 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 29 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 30 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.15 1.82 7.61 -52.49 -0.40 1.42 16 32 H 0.16 2.91 6.70 -52.48 -0.35 2.56 16 33 H 0.04 1.02 8.07 -51.92 -0.42 0.61 16 34 H 0.04 0.98 4.28 -51.93 -0.22 0.75 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 37 H 0.08 1.30 7.08 -51.92 -0.37 0.93 16 38 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.09 1.29 8.03 -51.93 -0.42 0.87 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -28.92 364.75 -9.55 -38.47 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.45 Total: 4.51 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -4.03 Total: -10.68 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.45 Total: -34.32 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.00 Total: -18.60 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.92 -9.55 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.362 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds