Wall clock time and date at job start Tue Mar 31 2020 13:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37973 * 120.07218 * 2 1 4 4 C 1.38342 * 120.14302 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29102 * 0.02562 * 4 3 2 6 6 N 1.48013 * 119.92582 * 180.02562 * 5 4 3 7 7 O 1.21796 * 120.00109 * 5.17557 * 6 5 4 8 8 O 1.21802 * 119.99797 * 185.17353 * 6 5 4 9 9 C 1.37935 * 120.14637 * 359.97438 * 5 4 3 10 10 C 1.39557 * 120.07005 * 179.72392 * 2 1 3 11 11 C 1.47844 * 120.14603 * 359.97438 * 10 2 1 12 12 O 1.21556 * 120.00220 * 58.77087 * 11 10 2 13 13 N 1.34781 * 119.99946 * 238.76870 * 11 10 2 14 14 C 1.46500 * 119.99879 * 355.55988 * 13 11 10 15 15 C 1.50691 * 109.47564 * 90.00026 * 14 13 11 16 16 H 1.08005 * 119.99477 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00568 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00174 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47284 * 89.99922 * 19 17 15 21 21 H 1.48505 * 109.47083 * 210.00065 * 19 17 15 22 22 H 1.48499 * 109.47091 * 329.99463 * 19 17 15 23 23 C 1.46496 * 120.00258 * 175.56256 * 13 11 10 24 24 C 1.53000 * 109.47398 * 94.79456 * 23 13 11 25 25 C 1.53001 * 117.50067 * 243.72501 * 24 23 13 26 26 C 1.53001 * 117.49930 * 175.06509 * 24 23 13 27 27 H 1.08994 * 109.47150 * 85.52827 * 1 2 3 28 28 H 1.08997 * 109.47152 * 325.52382 * 1 2 3 29 29 H 1.09005 * 109.46923 * 205.52718 * 1 2 3 30 30 H 1.07996 * 119.92836 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.85405 * 180.02562 * 4 3 2 32 32 H 1.08007 * 120.07525 * 180.02562 * 9 5 4 33 33 H 1.09008 * 109.47208 * 210.00412 * 14 13 11 34 34 H 1.09007 * 109.47246 * 329.99707 * 14 13 11 35 35 H 0.97001 * 120.00207 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.47256 * 214.80331 * 23 13 11 37 37 H 1.09007 * 109.46910 * 334.79374 * 23 13 11 38 38 H 1.08997 * 115.54739 * 29.39889 * 24 23 13 39 39 H 1.09001 * 117.49811 * 0.02562 * 25 24 23 40 40 H 1.09001 * 117.49519 * 145.02307 * 25 24 23 41 41 H 1.09000 * 117.49806 * 214.98500 * 26 24 23 42 42 H 1.08998 * 117.49608 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 7 5.7614 0.0130 0.0017 7 8 6.3623 1.0680 0.0978 8 8 6.3784 -1.0329 -0.0934 9 6 3.6023 -1.1989 0.0005 10 6 2.2063 -1.2077 0.0058 11 6 1.4719 -2.4909 0.0126 12 8 0.6960 -2.7518 -0.8860 13 7 1.6628 -3.3713 1.0150 14 6 2.6684 -3.1012 2.0456 15 6 2.0345 -2.3345 3.1774 16 1 0.9870 -2.0748 3.1337 17 6 2.7915 -1.9646 4.2688 18 7 4.0670 -2.2804 4.3218 19 14 2.0053 -1.0148 5.6721 20 1 1.4722 -1.9684 6.6778 21 1 3.0228 -0.1406 6.3094 22 1 0.8962 -0.1800 5.1447 23 6 0.8649 -4.5984 1.0741 24 6 1.6350 -5.7403 0.4079 25 6 1.0270 -6.3628 -0.8505 26 6 1.0177 -7.1389 0.4688 27 1 -0.3633 0.0801 -1.0245 28 1 -0.3633 0.8471 0.5817 29 1 -0.3633 -0.9274 0.4429 30 1 1.6585 2.1293 0.0004 31 1 4.1183 2.1330 0.0010 32 1 4.1494 -2.1302 0.0010 33 1 3.0648 -4.0441 2.4225 34 1 3.4791 -2.5119 1.6167 35 1 4.5995 -2.0204 5.0898 36 1 0.6662 -4.8529 2.1152 37 1 -0.0792 -4.4434 0.5516 38 1 2.7214 -5.6670 0.4587 39 1 0.0784 -5.9586 -1.2041 40 1 1.7134 -6.6995 -1.6275 41 1 1.6979 -7.9858 0.5594 42 1 0.0626 -7.2454 0.9832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:53 Heat of formation + Delta-G solvation = -2.274185 kcal Electronic energy + Delta-G solvation = -27392.920449 eV Core-core repulsion = 23534.643107 eV Total energy + Delta-G solvation = -3858.277342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.30776 -41.66026 -39.78572 -38.22447 -37.71270 -36.58915 -34.54778 -34.38115 -32.77927 -29.82638 -29.59947 -28.07025 -26.21971 -25.42187 -24.43177 -23.22337 -23.05791 -21.92084 -21.05833 -19.85927 -19.55343 -18.66256 -18.57845 -18.05205 -17.48064 -16.99482 -16.86623 -16.40167 -16.12825 -15.55105 -15.22591 -14.95736 -14.75280 -14.61082 -14.33109 -13.76263 -13.51047 -13.47937 -13.25547 -13.08459 -13.00614 -12.85023 -12.68305 -12.60777 -12.58479 -12.36506 -12.32946 -12.29505 -12.16086 -11.80775 -11.38644 -11.05179 -10.85109 -10.67787 -10.31195 -10.27868 -9.58587 -8.25871 -6.40864 -1.23130 -0.28384 0.24987 0.35264 1.36328 1.37685 1.46770 1.51089 1.98436 2.32504 2.37346 2.89648 3.05519 3.22660 3.38577 3.53453 3.69392 3.78130 3.83893 3.98114 4.05895 4.10277 4.32838 4.40400 4.51321 4.59649 4.64178 4.68959 4.72700 4.73331 4.77382 4.82180 4.99003 4.99757 5.10198 5.15243 5.18307 5.22990 5.25140 5.45673 5.55416 5.70023 5.96664 6.38609 6.49394 6.70377 7.06924 7.31172 8.79655 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008506 B = 0.006145 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.946484 B = 4555.815645 C = 5672.561180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.009 3.991 3 C -0.107 4.107 4 C -0.034 4.034 5 C -0.072 4.072 6 N 0.037 4.963 7 O -0.145 6.145 8 O -0.216 6.216 9 C -0.021 4.021 10 C -0.124 4.124 11 C 0.564 3.436 12 O -0.565 6.565 13 N -0.584 5.584 14 C 0.242 3.758 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.021 3.979 18 N -0.920 5.920 19 Si 0.952 3.048 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.260 1.260 23 C 0.150 3.850 24 C -0.190 4.190 25 C -0.169 4.169 26 C -0.154 4.154 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.202 0.798 31 H 0.183 0.817 32 H 0.133 0.867 33 H 0.020 0.980 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 3.762 -7.884 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 C -0.125 4.125 4 C -0.053 4.053 5 C -0.155 4.155 6 N 0.552 4.448 7 O -0.368 6.368 8 O -0.419 6.419 9 C -0.041 4.041 10 C -0.128 4.128 11 C 0.351 3.649 12 O -0.447 6.447 13 N -0.313 5.313 14 C 0.122 3.878 15 C -0.577 4.577 16 H 0.077 0.923 17 C -0.180 4.180 18 N -0.559 5.559 19 Si 0.777 3.223 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.185 1.185 23 C 0.028 3.972 24 C -0.209 4.209 25 C -0.206 4.206 26 C -0.191 4.191 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.219 0.781 31 H 0.200 0.800 32 H 0.151 0.849 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.613 3.490 -8.214 12.403 hybrid contribution 0.996 -0.115 1.127 1.509 sum -7.617 3.375 -7.087 10.938 Atomic orbital electron populations 1.21012 0.87772 1.03992 1.04624 1.20707 0.98669 0.91144 0.88726 1.21473 0.91702 0.99365 0.99996 1.21529 0.95368 0.96603 0.91798 1.21049 0.78056 0.97805 1.18637 1.43750 1.04394 0.99995 0.96665 1.94421 1.70365 1.20258 1.51794 1.94557 1.69158 1.22033 1.56190 1.20840 0.93874 0.97285 0.92051 1.19741 0.91944 0.95297 1.05775 1.18103 0.81685 0.83395 0.81687 1.90695 1.38957 1.78226 1.36806 1.48136 1.38277 1.19816 1.25052 1.19328 0.86784 0.96282 0.85430 1.21569 0.96461 1.36145 1.03514 0.92252 1.25680 0.95046 0.96682 1.00589 1.70038 1.07441 1.47078 1.31344 0.85625 0.78431 0.78832 0.79369 1.19894 1.21200 1.18452 1.21013 0.93433 0.81880 1.00901 1.22619 0.99074 0.95314 1.03884 1.23021 1.02622 1.03670 0.91302 1.23034 1.03032 0.93128 0.99916 0.87898 0.87301 0.93166 0.78143 0.79983 0.84928 0.96207 0.95167 0.92534 0.90194 0.90082 0.89580 0.88738 0.88589 0.87513 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.35 71.24 0.67 -2.12 16 2 C 0.01 0.25 5.91 -19.61 -0.12 0.13 16 3 C -0.11 -2.36 9.71 22.23 0.22 -2.14 16 4 C -0.03 -0.89 9.55 22.33 0.21 -0.67 16 5 C -0.07 -2.54 6.84 36.34 0.25 -2.29 16 6 N 0.04 1.43 4.45 -46.56 -0.21 1.22 16 7 O -0.14 -5.25 18.45 18.89 0.35 -4.90 16 8 O -0.22 -9.24 18.45 18.88 0.35 -8.89 16 9 C -0.02 -0.79 7.18 22.53 0.16 -0.63 16 10 C -0.12 -4.53 5.00 -20.09 -0.10 -4.63 16 11 C 0.56 22.38 5.90 86.79 0.51 22.89 16 12 O -0.57 -23.13 15.85 -3.89 -0.06 -23.19 16 13 N -0.58 -23.87 2.46 -829.56 -2.04 -25.91 16 14 C 0.24 11.52 4.94 85.63 0.42 11.95 16 15 C -0.54 -27.16 9.38 25.60 0.24 -26.92 16 16 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 17 C 0.02 1.07 5.46 84.65 0.46 1.53 16 18 N -0.92 -51.48 13.29 21.45 0.28 -51.19 16 19 Si 0.95 40.88 29.54 68.60 2.03 42.90 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 C 0.15 5.29 5.71 86.38 0.49 5.78 16 24 C -0.19 -5.97 6.01 -10.79 -0.06 -6.03 16 25 C -0.17 -4.48 10.18 30.62 0.31 -4.17 16 26 C -0.15 -3.68 10.25 30.62 0.31 -3.36 16 27 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.11 1.85 8.11 -2.39 -0.02 1.83 16 29 H 0.05 1.48 6.70 -2.38 -0.02 1.47 16 30 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.18 3.56 7.61 -2.91 -0.02 3.54 16 32 H 0.13 5.53 6.70 -2.91 -0.02 5.51 16 33 H 0.02 1.02 8.07 -2.38 -0.02 1.00 16 34 H 0.03 1.53 4.28 -2.38 -0.01 1.52 16 35 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 37 H 0.08 2.76 7.08 -2.38 -0.02 2.74 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.09 2.51 8.03 -2.39 -0.02 2.49 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.12 364.75 5.73 -59.40 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.05 Total: 21.25 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.98 Total: -10.69 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.96 Total: -75.88 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: 0.64 Total: -36.97 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.12 5.73 -59.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.121 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds