Wall clock time and date at job start Tue Mar 31 2020 13:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35279 * 126.70015 * 2 1 4 4 C 1.41964 * 103.95404 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88354 * 179.97438 * 4 3 2 6 6 C 1.36755 * 124.93646 * 132.72715 * 5 4 3 7 7 C 1.50700 * 125.55631 * 0.24454 * 6 5 4 8 8 C 1.34395 * 108.89461 * 180.26678 * 6 5 4 9 9 C 1.46772 * 106.50280 * 0.02562 * 8 6 5 10 10 C 1.47104 * 126.89814 * 180.02562 * 9 8 6 11 11 O 1.21559 * 120.00277 * 179.97438 * 10 9 8 12 12 O 1.34788 * 120.00037 * 359.95203 * 10 9 8 13 13 C 1.45207 * 116.99995 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47003 * 330.00222 * 13 12 10 15 15 C 1.52993 * 109.46991 * 90.00539 * 13 12 10 16 16 C 1.50703 * 109.46770 * 209.99936 * 13 12 10 17 17 H 1.07996 * 120.00124 * 0.02562 * 16 13 12 18 18 C 1.37881 * 119.99525 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99989 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 120.00055 * 0.02562 * 18 16 13 21 21 H 1.48507 * 109.46811 * 90.00153 * 20 18 16 22 22 H 1.48500 * 109.47144 * 209.99984 * 20 18 16 23 23 H 1.48495 * 109.47405 * 330.00216 * 20 18 16 24 24 C 1.35463 * 124.94581 * 313.03437 * 5 4 3 25 25 C 1.50698 * 125.85931 * 359.70746 * 24 5 4 26 26 N 1.30662 * 106.23057 * 0.27093 * 4 3 2 27 27 O 1.20912 * 111.49172 * 359.52929 * 26 4 3 28 28 H 1.08994 * 109.47167 * 89.99842 * 1 2 3 29 29 H 1.09002 * 109.46573 * 209.99225 * 1 2 3 30 30 H 1.08999 * 109.46961 * 329.99143 * 1 2 3 31 31 H 1.07993 * 128.02242 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47230 * 84.82598 * 7 6 5 33 33 H 1.09006 * 109.47035 * 204.82730 * 7 6 5 34 34 H 1.08998 * 109.47179 * 324.82373 * 7 6 5 35 35 H 1.07995 * 126.75075 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47125 * 299.99655 * 15 13 12 37 37 H 1.09001 * 109.47265 * 59.99628 * 15 13 12 38 38 H 1.08999 * 109.47431 * 180.02562 * 15 13 12 39 39 H 0.96997 * 120.00020 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46937 * 90.00207 * 25 24 5 41 41 H 1.08993 * 109.47153 * 210.00413 * 25 24 5 42 42 H 1.09008 * 109.47171 * 330.00688 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8315 1.2429 0.0004 6 6 5.8917 0.9831 0.8243 7 6 5.9465 -0.1054 1.8650 8 6 6.8765 1.8571 0.5551 9 6 6.3817 2.7244 -0.5206 10 6 7.1007 3.8380 -1.1586 11 8 6.5679 4.4774 -2.0446 12 8 8.3502 4.1496 -0.7605 13 6 8.9993 5.2598 -1.4348 14 1 8.6305 5.3290 -2.4581 15 6 8.6880 6.5602 -0.6914 16 6 10.4894 5.0352 -1.4517 17 1 10.9067 4.1469 -1.0013 18 6 11.3198 5.9641 -2.0424 19 7 12.6201 5.7679 -2.0576 20 14 10.5978 7.5010 -2.8209 21 1 10.5225 8.5817 -1.8051 22 1 11.4623 7.9387 -3.9462 23 1 9.2348 7.2044 -3.3301 24 6 5.1180 2.2885 -0.8119 25 6 4.2020 2.8713 -1.8570 26 7 3.4765 -0.7624 -0.0050 27 8 2.3084 -1.0749 0.0004 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5140 31 1 2.0309 2.1264 -0.0004 32 1 6.2563 -1.0400 1.3972 33 1 6.6630 0.1682 2.6396 34 1 4.9600 -0.2319 2.3109 35 1 7.8418 1.9113 1.0363 36 1 7.6102 6.7227 -0.6791 37 1 9.0567 6.4909 0.3320 38 1 9.1748 7.3937 -1.1977 39 1 13.2043 6.4212 -2.4735 40 1 3.5966 3.6600 -1.4104 41 1 4.7967 3.2864 -2.6706 42 1 3.5501 2.0889 -2.2459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:14 Heat of formation + Delta-G solvation = 30.344867 kcal Electronic energy + Delta-G solvation = -26278.874155 eV Core-core repulsion = 22422.011281 eV Total energy + Delta-G solvation = -3856.862873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.54581 -41.63066 -39.20565 -35.80200 -35.03091 -34.01774 -33.11054 -32.79599 -31.05116 -30.36249 -29.27027 -28.37548 -25.52424 -25.11579 -24.20854 -23.15280 -22.08162 -20.89945 -19.47960 -18.79246 -18.20869 -17.58928 -17.19370 -16.66811 -16.06912 -15.66563 -15.38677 -14.89020 -14.55371 -14.37733 -14.15153 -13.85296 -13.71797 -13.38118 -13.32546 -13.05075 -12.94877 -12.66368 -12.63107 -12.51365 -12.34159 -12.24303 -11.79869 -11.65491 -11.55700 -11.36626 -10.90701 -10.82779 -10.16266 -9.95168 -9.88854 -9.66667 -9.52248 -9.04325 -8.74004 -8.62192 -8.13044 -6.16785 -4.18328 0.80266 1.24254 1.86699 2.04270 2.36424 2.55865 3.22942 3.34875 3.37869 3.69290 3.75213 3.87187 4.05596 4.31980 4.35351 4.62778 4.69147 4.73583 4.82482 4.99497 5.04059 5.14526 5.17053 5.19807 5.39846 5.43032 5.48626 5.52639 5.60740 5.75129 5.87333 5.96324 6.15620 6.26530 6.37772 6.50056 6.67341 6.70954 6.86808 7.06054 7.11924 7.45371 7.60434 7.68644 8.32985 8.73708 8.92375 9.40782 10.95477 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.002837 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.319193 B = 9866.851908 C =10535.164815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.015 4.015 3 C -0.226 4.226 4 C 0.233 3.767 5 N -0.374 5.374 6 C 0.014 3.986 7 C -0.079 4.079 8 C -0.127 4.127 9 C -0.190 4.190 10 C 0.532 3.468 11 O -0.530 6.530 12 O -0.333 6.333 13 C 0.191 3.809 14 H 0.046 0.954 15 C -0.169 4.169 16 C -0.522 4.522 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.879 3.121 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.262 1.262 24 C 0.115 3.885 25 C -0.095 4.095 26 N -0.354 5.354 27 O 0.117 5.883 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.163 0.837 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.268 0.732 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.387 -11.648 6.615 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.249 4.249 4 C -0.014 4.014 5 N -0.055 5.055 6 C -0.090 4.090 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.198 4.198 10 C 0.378 3.622 11 O -0.422 6.422 12 O -0.248 6.248 13 C 0.138 3.862 14 H 0.064 0.936 15 C -0.226 4.226 16 C -0.560 4.560 17 H 0.105 0.895 18 C -0.124 4.124 19 N -0.527 5.527 20 Si 0.709 3.291 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.187 1.187 24 C 0.003 3.997 25 C -0.152 4.152 26 N -0.057 5.057 27 O 0.048 5.952 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.181 0.819 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.676 -12.582 6.321 29.283 hybrid contribution -0.407 1.772 -0.464 1.876 sum -26.083 -10.810 5.857 28.835 Atomic orbital electron populations 1.20417 0.83128 1.05117 1.04622 1.24403 0.96628 0.85492 1.01372 1.22371 0.89688 1.01901 1.10932 1.20268 0.87184 0.88558 1.05376 1.40021 1.09534 1.25416 1.30513 1.20391 0.87390 1.02569 0.98621 1.20305 1.02599 0.95260 0.95476 1.22032 0.99095 0.95270 0.98625 1.19400 0.94381 1.01597 1.04389 1.19930 0.81152 0.81472 0.79665 1.90729 1.68497 1.52296 1.30722 1.86591 1.26288 1.51355 1.60566 1.20906 0.93032 0.80135 0.92174 0.93625 1.22515 0.99117 0.98824 1.02167 1.20803 0.87087 1.09286 1.38777 0.89478 1.24733 0.94648 0.97847 0.95214 1.69842 1.02658 1.36174 1.44045 0.86965 0.79537 0.83636 0.78997 1.20046 1.21794 1.18650 1.20396 0.95485 0.89219 0.94582 1.20649 0.97957 0.99999 0.96555 1.74162 0.97206 1.14191 1.20143 1.84907 1.10450 1.32569 1.67293 0.88872 0.89360 0.88611 0.80226 0.90737 0.89463 0.92290 0.81935 0.94393 0.91811 0.92655 0.92149 0.90064 0.87446 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.02 -0.10 7.48 -35.36 -0.26 -0.37 16 3 C -0.23 -1.91 10.02 -39.21 -0.39 -2.30 16 4 C 0.23 2.81 6.52 -154.52 -1.01 1.80 16 5 N -0.37 -5.34 2.92 -54.16 -0.16 -5.50 16 6 C 0.01 0.20 6.82 -81.75 -0.56 -0.36 16 7 C -0.08 -0.87 9.80 36.01 0.35 -0.51 16 8 C -0.13 -2.06 10.87 -37.49 -0.41 -2.46 16 9 C -0.19 -3.47 6.29 -103.37 -0.65 -4.12 16 10 C 0.53 11.64 7.92 34.33 0.27 11.91 16 11 O -0.53 -12.13 14.07 -19.31 -0.27 -12.40 16 12 O -0.33 -8.10 9.76 -40.73 -0.40 -8.50 16 13 C 0.19 5.01 2.16 -27.88 -0.06 4.95 16 14 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 15 C -0.17 -3.98 9.03 37.15 0.34 -3.64 16 16 C -0.52 -15.36 9.48 -34.44 -0.33 -15.68 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 19 N -0.89 -27.25 13.96 55.43 0.77 -26.47 16 20 Si 0.88 22.08 24.37 -169.99 -4.14 17.93 16 21 H -0.27 -6.58 6.87 56.52 0.39 -6.19 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 24 C 0.11 1.78 6.86 -81.51 -0.56 1.22 16 25 C -0.09 -1.21 9.01 36.00 0.32 -0.89 16 26 N -0.35 -4.26 11.88 31.24 0.37 -3.89 16 27 O 0.12 1.09 11.19 17.07 0.19 1.28 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 35 H 0.16 2.48 8.06 -52.49 -0.42 2.05 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 1.59 6.47 -51.93 -0.34 1.26 16 42 H 0.06 0.67 7.41 -51.92 -0.38 0.29 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -35.04 355.70 -6.39 -41.43 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.46 Total: -1.21 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.66 Total: -8.03 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.99 Total: -35.86 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.48 Total: -19.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.04 -6.39 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds