Wall clock time and date at job start Tue Mar 31 2020 13:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35279 * 126.70015 * 2 1 4 4 C 1.41964 * 103.95404 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88354 * 179.97438 * 4 3 2 6 6 C 1.36755 * 124.93646 * 132.72715 * 5 4 3 7 7 C 1.50700 * 125.55631 * 0.24454 * 6 5 4 8 8 C 1.34395 * 108.89461 * 180.26678 * 6 5 4 9 9 C 1.46772 * 106.50280 * 0.02562 * 8 6 5 10 10 C 1.47104 * 126.89814 * 180.02562 * 9 8 6 11 11 O 1.21559 * 120.00277 * 179.97438 * 10 9 8 12 12 O 1.34788 * 120.00037 * 359.95203 * 10 9 8 13 13 C 1.45207 * 116.99995 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47003 * 330.00222 * 13 12 10 15 15 C 1.52993 * 109.46991 * 90.00539 * 13 12 10 16 16 C 1.50703 * 109.46770 * 209.99936 * 13 12 10 17 17 H 1.07996 * 120.00124 * 0.02562 * 16 13 12 18 18 C 1.37881 * 119.99525 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99989 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 120.00055 * 0.02562 * 18 16 13 21 21 H 1.48507 * 109.46811 * 90.00153 * 20 18 16 22 22 H 1.48500 * 109.47144 * 209.99984 * 20 18 16 23 23 H 1.48495 * 109.47405 * 330.00216 * 20 18 16 24 24 C 1.35463 * 124.94581 * 313.03437 * 5 4 3 25 25 C 1.50698 * 125.85931 * 359.70746 * 24 5 4 26 26 N 1.30662 * 106.23057 * 0.27093 * 4 3 2 27 27 O 1.20912 * 111.49172 * 359.52929 * 26 4 3 28 28 H 1.08994 * 109.47167 * 89.99842 * 1 2 3 29 29 H 1.09002 * 109.46573 * 209.99225 * 1 2 3 30 30 H 1.08999 * 109.46961 * 329.99143 * 1 2 3 31 31 H 1.07993 * 128.02242 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47230 * 84.82598 * 7 6 5 33 33 H 1.09006 * 109.47035 * 204.82730 * 7 6 5 34 34 H 1.08998 * 109.47179 * 324.82373 * 7 6 5 35 35 H 1.07995 * 126.75075 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47125 * 299.99655 * 15 13 12 37 37 H 1.09001 * 109.47265 * 59.99628 * 15 13 12 38 38 H 1.08999 * 109.47431 * 180.02562 * 15 13 12 39 39 H 0.96997 * 120.00020 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46937 * 90.00207 * 25 24 5 41 41 H 1.08993 * 109.47153 * 210.00413 * 25 24 5 42 42 H 1.09008 * 109.47171 * 330.00688 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8315 1.2429 0.0004 6 6 5.8917 0.9831 0.8243 7 6 5.9465 -0.1054 1.8650 8 6 6.8765 1.8571 0.5551 9 6 6.3817 2.7244 -0.5206 10 6 7.1007 3.8380 -1.1586 11 8 6.5679 4.4774 -2.0446 12 8 8.3502 4.1496 -0.7605 13 6 8.9993 5.2598 -1.4348 14 1 8.6305 5.3290 -2.4581 15 6 8.6880 6.5602 -0.6914 16 6 10.4894 5.0352 -1.4517 17 1 10.9067 4.1469 -1.0013 18 6 11.3198 5.9641 -2.0424 19 7 12.6201 5.7679 -2.0576 20 14 10.5978 7.5010 -2.8209 21 1 10.5225 8.5817 -1.8051 22 1 11.4623 7.9387 -3.9462 23 1 9.2348 7.2044 -3.3301 24 6 5.1180 2.2885 -0.8119 25 6 4.2020 2.8713 -1.8570 26 7 3.4765 -0.7624 -0.0050 27 8 2.3084 -1.0749 0.0004 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5140 31 1 2.0309 2.1264 -0.0004 32 1 6.2563 -1.0400 1.3972 33 1 6.6630 0.1682 2.6396 34 1 4.9600 -0.2319 2.3109 35 1 7.8418 1.9113 1.0363 36 1 7.6102 6.7227 -0.6791 37 1 9.0567 6.4909 0.3320 38 1 9.1748 7.3937 -1.1977 39 1 13.2043 6.4212 -2.4735 40 1 3.5966 3.6600 -1.4104 41 1 4.7967 3.2864 -2.6706 42 1 3.5501 2.0889 -2.2459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:13 Heat of formation + Delta-G solvation = 9.799391 kcal Electronic energy + Delta-G solvation = -26279.765073 eV Core-core repulsion = 22422.011281 eV Total energy + Delta-G solvation = -3857.753792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.30421 -42.80745 -40.96939 -37.62275 -35.89669 -35.25521 -34.62401 -33.86835 -32.76541 -31.80856 -30.28024 -28.77080 -27.37276 -26.73326 -25.19014 -24.26217 -23.21316 -22.54495 -21.02426 -19.79825 -19.06447 -18.91033 -18.53172 -18.26559 -17.67242 -17.12976 -16.92685 -16.40838 -16.01754 -15.33602 -15.06332 -14.89584 -14.68550 -14.46458 -14.28517 -14.27911 -14.21998 -13.97282 -13.80038 -13.64563 -13.46913 -13.41048 -13.30810 -13.26328 -12.84569 -12.66686 -12.36189 -12.21375 -11.78925 -11.72704 -11.63919 -11.36135 -11.20441 -10.82441 -10.52155 -9.91978 -9.31247 -8.43943 -6.52918 -0.05568 0.38732 0.75540 0.98372 1.24248 1.26187 1.31898 1.42304 2.00385 2.10035 2.16416 2.20953 2.88538 3.08398 3.23793 3.57529 3.75463 3.80809 3.97142 4.00347 4.19046 4.25426 4.31063 4.41814 4.42977 4.52527 4.53847 4.57667 4.67712 4.69942 4.73708 4.77160 4.84170 4.87340 4.90323 5.05712 5.21615 5.24020 5.34856 5.46829 5.62522 5.73019 5.98725 6.15894 6.50418 6.94063 6.98449 7.12631 8.72309 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.002837 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.319193 B = 9866.851908 C =10535.164815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.232 4.232 4 C 0.201 3.799 5 N -0.371 5.371 6 C 0.021 3.979 7 C -0.074 4.074 8 C -0.150 4.150 9 C -0.234 4.234 10 C 0.529 3.471 11 O -0.546 6.546 12 O -0.349 6.349 13 C 0.194 3.806 14 H 0.032 0.968 15 C -0.162 4.162 16 C -0.540 4.540 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.931 5.931 20 Si 0.943 3.057 21 H -0.249 1.249 22 H -0.282 1.282 23 H -0.256 1.256 24 C 0.131 3.869 25 C -0.091 4.091 26 N -0.379 5.379 27 O 0.120 5.880 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.200 0.800 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.160 0.840 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.276 0.724 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.364 -11.354 6.911 33.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.256 4.256 4 C -0.044 4.044 5 N -0.050 5.050 6 C -0.083 4.083 7 C -0.131 4.131 8 C -0.173 4.173 9 C -0.242 4.242 10 C 0.377 3.623 11 O -0.440 6.440 12 O -0.265 6.265 13 C 0.140 3.860 14 H 0.050 0.950 15 C -0.219 4.219 16 C -0.578 4.578 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.569 5.569 20 Si 0.768 3.232 21 H -0.174 1.174 22 H -0.209 1.209 23 H -0.180 1.180 24 C 0.017 3.983 25 C -0.148 4.148 26 N -0.082 5.082 27 O 0.049 5.951 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -29.661 -12.313 6.642 32.795 hybrid contribution 0.683 1.443 -0.523 1.680 sum -28.978 -10.870 6.119 31.549 Atomic orbital electron populations 1.20727 0.79521 1.06814 1.06172 1.25202 0.98122 0.83900 0.98382 1.22649 0.88047 1.03394 1.11464 1.20585 0.87218 0.89091 1.07504 1.40106 1.10416 1.24880 1.29629 1.20822 0.86775 1.02228 0.98521 1.20386 1.03616 0.94158 0.94983 1.22075 0.99928 0.96211 0.99111 1.19301 0.95982 1.02273 1.06646 1.20452 0.80195 0.82100 0.79565 1.90694 1.68518 1.53222 1.31541 1.86577 1.27987 1.51161 1.60756 1.20645 0.91059 0.82086 0.92241 0.95017 1.22396 1.00555 0.96989 1.01958 1.20950 0.89387 1.08280 1.39151 0.93832 1.25604 0.94842 1.01307 0.95335 1.69965 1.04218 1.37788 1.44964 0.85938 0.78910 0.79632 0.78737 1.17378 1.20872 1.18029 1.20703 0.94684 0.88735 0.94156 1.20704 0.97626 1.01238 0.95212 1.74163 0.98677 1.14406 1.20915 1.84875 1.10004 1.33504 1.66671 0.87139 0.87901 0.86646 0.78257 0.90410 0.87733 0.91456 0.82197 0.92305 0.91310 0.92383 0.91507 0.87663 0.89634 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.03 10.45 71.24 0.74 0.77 16 2 C 0.01 0.07 7.48 25.00 0.19 0.26 16 3 C -0.23 -3.22 10.02 22.51 0.23 -2.99 16 4 C 0.20 4.49 6.52 133.98 0.87 5.36 16 5 N -0.37 -10.30 2.92 -326.32 -0.95 -11.26 16 6 C 0.02 0.60 6.82 40.91 0.28 0.87 16 7 C -0.07 -1.56 9.80 71.24 0.70 -0.86 16 8 C -0.15 -5.06 10.87 23.62 0.26 -4.80 16 9 C -0.23 -8.82 6.29 -19.05 -0.12 -8.94 16 10 C 0.53 23.95 7.92 70.15 0.56 24.50 16 11 O -0.55 -25.49 14.07 19.64 0.28 -25.21 16 12 O -0.35 -17.77 9.76 -56.99 -0.56 -18.32 16 13 C 0.19 10.40 2.16 29.85 0.06 10.47 16 14 H 0.03 1.78 6.22 -2.39 -0.01 1.77 16 15 C -0.16 -7.50 9.03 71.98 0.65 -6.85 16 16 C -0.54 -33.18 9.48 25.60 0.24 -32.93 16 17 H 0.04 2.96 8.06 -2.91 -0.02 2.94 16 18 C 0.03 1.71 5.45 84.66 0.46 2.17 16 19 N -0.93 -58.49 13.96 21.45 0.30 -58.19 16 20 Si 0.94 45.29 24.37 68.60 1.67 46.96 16 21 H -0.25 -10.94 6.87 99.48 0.68 -10.26 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.26 -12.01 6.53 99.48 0.65 -11.36 16 24 C 0.13 4.04 6.86 41.66 0.29 4.32 16 25 C -0.09 -2.20 9.01 71.24 0.64 -1.56 16 26 N -0.38 -8.52 11.88 -56.20 -0.67 -9.19 16 27 O 0.12 1.95 11.19 71.27 0.80 2.74 16 28 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 1.31 7.91 -2.39 -0.02 1.29 16 35 H 0.16 5.23 8.06 -2.91 -0.02 5.21 16 36 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.06 2.63 3.27 -2.39 -0.01 2.63 16 39 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.52 6.47 -2.39 -0.02 2.50 16 42 H 0.09 1.66 7.41 -2.38 -0.02 1.65 16 Total: -1.00 -79.76 355.70 7.88 -71.88 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.97 Total: 10.80 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 6.05 Total: -10.21 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.32 Total: -78.64 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: 0.52 Total: -40.79 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.67 Total: 46.96 kcal Total: -79.76 7.88 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.679 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds