Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35276 * 126.70334 * 2 1 4 4 C 1.41969 * 103.95494 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88124 * 179.97438 * 4 3 2 6 6 C 1.36755 * 124.93646 * 132.72374 * 5 4 3 7 7 C 1.50699 * 125.55696 * 0.23995 * 6 5 4 8 8 C 1.34395 * 108.89461 * 180.26678 * 6 5 4 9 9 C 1.46772 * 106.50280 * 0.02562 * 8 6 5 10 10 C 1.47113 * 126.89950 * 180.02562 * 9 8 6 11 11 O 1.21552 * 120.00115 * 179.97438 * 10 9 8 12 12 O 1.34786 * 119.99484 * 359.95110 * 10 9 8 13 13 C 1.45207 * 116.99577 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46783 * 30.00114 * 13 12 10 15 15 C 1.52999 * 109.46976 * 269.99959 * 13 12 10 16 16 C 1.50700 * 109.46763 * 150.00317 * 13 12 10 17 17 H 1.07994 * 120.00509 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99682 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00099 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99901 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47438 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47359 * 119.99915 * 20 18 16 23 23 H 1.48509 * 109.47185 * 240.00135 * 20 18 16 24 24 C 1.35462 * 124.94520 * 313.02588 * 5 4 3 25 25 C 1.50697 * 125.85785 * 359.73761 * 24 5 4 26 26 N 1.30656 * 106.22745 * 0.24453 * 4 3 2 27 27 O 1.20910 * 111.49762 * 359.57062 * 26 4 3 28 28 H 1.09005 * 109.47228 * 89.99906 * 1 2 3 29 29 H 1.09002 * 109.46915 * 209.99824 * 1 2 3 30 30 H 1.08991 * 109.47324 * 329.99326 * 1 2 3 31 31 H 1.07997 * 128.02501 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46852 * 84.82855 * 7 6 5 33 33 H 1.09001 * 109.47376 * 204.82429 * 7 6 5 34 34 H 1.08995 * 109.47443 * 324.83265 * 7 6 5 35 35 H 1.07995 * 126.75075 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47054 * 60.00473 * 15 13 12 37 37 H 1.09001 * 109.47133 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47907 * 299.99973 * 15 13 12 39 39 H 0.96993 * 119.99876 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47032 * 89.99859 * 25 24 5 41 41 H 1.09002 * 109.46631 * 209.99483 * 25 24 5 42 42 H 1.08996 * 109.46923 * 329.99643 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6247 0.5356 0.0006 5 7 4.8316 1.2428 0.0004 6 6 5.8916 0.9830 0.8243 7 6 5.9465 -0.1054 1.8651 8 6 6.8765 1.8570 0.5551 9 6 6.3817 2.7243 -0.5207 10 6 7.1008 3.8378 -1.1587 11 8 6.5680 4.4772 -2.0447 12 8 8.3502 4.1494 -0.7606 13 6 8.9989 5.2603 -1.4341 14 1 8.2457 5.9783 -1.7585 15 6 9.7661 4.7408 -2.6515 16 6 9.9577 5.9322 -0.4852 17 1 10.0689 5.5612 0.5229 18 6 10.6939 7.0199 -0.9046 19 7 10.5590 7.4715 -2.1324 20 14 11.8819 7.8532 0.2717 21 1 11.8472 7.1596 1.5843 22 1 13.2568 7.7899 -0.2859 23 1 11.4858 9.2731 0.4521 24 6 5.1181 2.2882 -0.8120 25 6 4.2019 2.8713 -1.8568 26 7 3.4764 -0.7625 -0.0044 27 8 2.3084 -1.0750 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8898 0.5139 31 1 2.0310 2.1264 0.0004 32 1 6.2563 -1.0400 1.3975 33 1 6.6629 0.1682 2.6397 34 1 4.9600 -0.2319 2.3110 35 1 7.8418 1.9112 1.0363 36 1 9.0726 4.2548 -3.3378 37 1 10.2535 5.5746 -3.1569 38 1 10.5194 4.0227 -2.3272 39 1 11.0772 8.2364 -2.4275 40 1 3.5968 3.6601 -1.4100 41 1 4.7965 3.2863 -2.6706 42 1 3.5498 2.0891 -2.2455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = 20.584462 kcal Electronic energy + Delta-G solvation = -26205.346373 eV Core-core repulsion = 22348.060256 eV Total energy + Delta-G solvation = -3857.286116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.50430 -41.55787 -38.97004 -35.57063 -34.97423 -33.97309 -33.15990 -32.73056 -30.88109 -29.50658 -29.13282 -28.33659 -25.38355 -25.16139 -24.15346 -23.05863 -21.99527 -20.80428 -19.35860 -18.68792 -18.16461 -17.53157 -17.02196 -16.51322 -15.93837 -15.50177 -15.09932 -14.62226 -14.46791 -14.37268 -14.16416 -13.81265 -13.66727 -13.31739 -13.27363 -13.00738 -12.86267 -12.57894 -12.46432 -12.31274 -12.07317 -11.84137 -11.60573 -11.39053 -11.16183 -11.01779 -10.84603 -10.74884 -10.27257 -10.21613 -9.90761 -9.53610 -9.41943 -8.80381 -8.66210 -8.42354 -8.06197 -6.12052 -4.17912 0.84419 1.30131 1.95653 2.10673 2.42537 2.59934 3.27857 3.34413 3.39971 3.84054 3.89253 3.97081 4.10830 4.39640 4.41802 4.67435 4.75236 4.79075 4.85813 5.05401 5.08495 5.21054 5.21777 5.24683 5.44056 5.45835 5.56701 5.63384 5.70362 5.80627 5.93660 6.07943 6.33784 6.73063 6.77627 6.90852 6.99729 7.02702 7.12446 7.29352 7.68110 7.72672 7.82312 8.03193 8.23334 8.76730 9.01816 9.47271 10.95622 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.002710 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.413602 B =10328.401374 C =10824.123736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.016 4.016 3 C -0.225 4.225 4 C 0.234 3.766 5 N -0.374 5.374 6 C 0.012 3.988 7 C -0.078 4.078 8 C -0.128 4.128 9 C -0.187 4.187 10 C 0.530 3.470 11 O -0.528 6.528 12 O -0.348 6.348 13 C 0.216 3.784 14 H 0.047 0.953 15 C -0.154 4.154 16 C -0.517 4.517 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.112 3.888 25 C -0.094 4.094 26 N -0.355 5.355 27 O 0.116 5.884 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.161 0.839 36 H 0.016 0.984 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 -15.921 5.465 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.248 4.248 4 C -0.013 4.013 5 N -0.056 5.056 6 C -0.091 4.091 7 C -0.136 4.136 8 C -0.151 4.151 9 C -0.195 4.195 10 C 0.376 3.624 11 O -0.421 6.421 12 O -0.264 6.264 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.212 4.212 16 C -0.555 4.555 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.001 3.999 25 C -0.151 4.151 26 N -0.059 5.059 27 O 0.047 5.953 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.179 0.821 36 H 0.035 0.965 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.943 -16.773 5.106 26.554 hybrid contribution 0.444 1.336 0.401 1.464 sum -19.499 -15.437 5.506 25.472 Atomic orbital electron populations 1.20413 0.83144 1.05100 1.04605 1.24395 0.96614 0.85498 1.01452 1.22386 0.89711 1.01925 1.10822 1.20274 0.87237 0.88533 1.05228 1.40018 1.09485 1.25497 1.30574 1.20369 0.87457 1.02637 0.98666 1.20292 1.02582 0.95220 0.95475 1.22012 0.99094 0.95334 0.98708 1.19515 0.94390 1.01487 1.04121 1.19864 0.81286 0.81484 0.79797 1.90729 1.68849 1.51756 1.30747 1.86562 1.26242 1.52290 1.61302 1.20618 0.91216 0.81133 0.90716 0.93546 1.22156 0.99345 1.01712 0.98000 1.21081 1.22621 1.13033 0.98728 0.91263 1.24887 0.97058 0.96474 0.95665 1.69914 1.41316 1.25220 1.16375 0.86235 0.80184 0.79055 0.80745 1.19480 1.20771 1.20818 1.20410 0.95546 0.89253 0.94712 1.20642 0.97936 0.99926 0.96593 1.74146 0.97210 1.14217 1.20306 1.84901 1.10458 1.32573 1.67363 0.88886 0.89394 0.88607 0.80202 0.90846 0.89538 0.92306 0.82098 0.96506 0.88322 0.94490 0.92549 0.90045 0.87437 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.45 36.00 0.38 0.19 16 2 C -0.02 -0.11 7.48 -35.36 -0.26 -0.38 16 3 C -0.23 -2.03 10.02 -39.21 -0.39 -2.42 16 4 C 0.23 2.93 6.52 -154.53 -1.01 1.93 16 5 N -0.37 -5.55 2.92 -54.16 -0.16 -5.71 16 6 C 0.01 0.18 6.82 -81.75 -0.56 -0.38 16 7 C -0.08 -0.88 9.80 36.01 0.35 -0.53 16 8 C -0.13 -2.14 10.87 -37.49 -0.41 -2.55 16 9 C -0.19 -3.58 6.29 -103.36 -0.65 -4.23 16 10 C 0.53 12.24 7.92 34.33 0.27 12.51 16 11 O -0.53 -12.92 14.07 -19.31 -0.27 -13.19 16 12 O -0.35 -8.87 9.76 -40.73 -0.40 -9.27 16 13 C 0.22 6.02 2.57 -27.88 -0.07 5.95 16 14 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 15 C -0.15 -4.08 9.33 37.16 0.35 -3.73 16 16 C -0.52 -14.91 8.90 -34.44 -0.31 -15.22 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.78 11.32 55.43 0.63 -25.16 16 20 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.11 1.82 6.86 -81.51 -0.56 1.26 16 25 C -0.09 -1.28 9.01 36.00 0.32 -0.96 16 26 N -0.36 -4.39 11.88 31.24 0.37 -4.02 16 27 O 0.12 1.12 11.19 17.06 0.19 1.31 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 35 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.69 6.47 -51.93 -0.34 1.36 16 42 H 0.06 0.70 7.41 -51.93 -0.38 0.31 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -34.14 362.51 -7.43 -41.57 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.59 Total: -0.56 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.64 Total: -6.92 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.84 Total: -34.88 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.48 Total: -21.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.14 -7.43 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.155 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds