Wall clock time and date at job start Tue Mar 31 2020 13:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35276 * 126.70334 * 2 1 4 4 C 1.41969 * 103.95494 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88124 * 179.97438 * 4 3 2 6 6 C 1.36755 * 124.93646 * 132.72374 * 5 4 3 7 7 C 1.50699 * 125.55696 * 0.23995 * 6 5 4 8 8 C 1.34395 * 108.89461 * 180.26678 * 6 5 4 9 9 C 1.46772 * 106.50280 * 0.02562 * 8 6 5 10 10 C 1.47113 * 126.89950 * 180.02562 * 9 8 6 11 11 O 1.21552 * 120.00115 * 179.97438 * 10 9 8 12 12 O 1.34786 * 119.99484 * 359.95110 * 10 9 8 13 13 C 1.45207 * 116.99577 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46783 * 30.00114 * 13 12 10 15 15 C 1.52999 * 109.46976 * 269.99959 * 13 12 10 16 16 C 1.50700 * 109.46763 * 150.00317 * 13 12 10 17 17 H 1.07994 * 120.00509 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99682 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00099 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99901 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47438 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47359 * 119.99915 * 20 18 16 23 23 H 1.48509 * 109.47185 * 240.00135 * 20 18 16 24 24 C 1.35462 * 124.94520 * 313.02588 * 5 4 3 25 25 C 1.50697 * 125.85785 * 359.73761 * 24 5 4 26 26 N 1.30656 * 106.22745 * 0.24453 * 4 3 2 27 27 O 1.20910 * 111.49762 * 359.57062 * 26 4 3 28 28 H 1.09005 * 109.47228 * 89.99906 * 1 2 3 29 29 H 1.09002 * 109.46915 * 209.99824 * 1 2 3 30 30 H 1.08991 * 109.47324 * 329.99326 * 1 2 3 31 31 H 1.07997 * 128.02501 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46852 * 84.82855 * 7 6 5 33 33 H 1.09001 * 109.47376 * 204.82429 * 7 6 5 34 34 H 1.08995 * 109.47443 * 324.83265 * 7 6 5 35 35 H 1.07995 * 126.75075 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47054 * 60.00473 * 15 13 12 37 37 H 1.09001 * 109.47133 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47907 * 299.99973 * 15 13 12 39 39 H 0.96993 * 119.99876 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47032 * 89.99859 * 25 24 5 41 41 H 1.09002 * 109.46631 * 209.99483 * 25 24 5 42 42 H 1.08996 * 109.46923 * 329.99643 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6247 0.5356 0.0006 5 7 4.8316 1.2428 0.0004 6 6 5.8916 0.9830 0.8243 7 6 5.9465 -0.1054 1.8651 8 6 6.8765 1.8570 0.5551 9 6 6.3817 2.7243 -0.5207 10 6 7.1008 3.8378 -1.1587 11 8 6.5680 4.4772 -2.0447 12 8 8.3502 4.1494 -0.7606 13 6 8.9989 5.2603 -1.4341 14 1 8.2457 5.9783 -1.7585 15 6 9.7661 4.7408 -2.6515 16 6 9.9577 5.9322 -0.4852 17 1 10.0689 5.5612 0.5229 18 6 10.6939 7.0199 -0.9046 19 7 10.5590 7.4715 -2.1324 20 14 11.8819 7.8532 0.2717 21 1 11.8472 7.1596 1.5843 22 1 13.2568 7.7899 -0.2859 23 1 11.4858 9.2731 0.4521 24 6 5.1181 2.2882 -0.8120 25 6 4.2019 2.8713 -1.8568 26 7 3.4764 -0.7625 -0.0044 27 8 2.3084 -1.0750 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8898 0.5139 31 1 2.0310 2.1264 0.0004 32 1 6.2563 -1.0400 1.3975 33 1 6.6629 0.1682 2.6397 34 1 4.9600 -0.2319 2.3110 35 1 7.8418 1.9112 1.0363 36 1 9.0726 4.2548 -3.3378 37 1 10.2535 5.5746 -3.1569 38 1 10.5194 4.0227 -2.3272 39 1 11.0772 8.2364 -2.4275 40 1 3.5968 3.6601 -1.4100 41 1 4.7965 3.2863 -2.6706 42 1 3.5498 2.0891 -2.2455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:18 Heat of formation + Delta-G solvation = 2.365899 kcal Electronic energy + Delta-G solvation = -26206.136389 eV Core-core repulsion = 22348.060256 eV Total energy + Delta-G solvation = -3858.076133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.30237 -42.78894 -40.84595 -37.50609 -35.89027 -35.29029 -34.62236 -33.85937 -32.17987 -31.42408 -30.26493 -28.77078 -27.46811 -26.67287 -25.17624 -24.21894 -23.19640 -22.53750 -20.94183 -19.76398 -19.00127 -18.70327 -18.49670 -18.24558 -17.49126 -16.98029 -16.83684 -16.24498 -16.10894 -15.32760 -14.97734 -14.80874 -14.53418 -14.44563 -14.28235 -14.05431 -13.97189 -13.85795 -13.74939 -13.46147 -13.31035 -13.26365 -13.19502 -12.99308 -12.80437 -12.65010 -12.38547 -12.35883 -12.13477 -11.78262 -11.55895 -11.35569 -10.96700 -10.59640 -10.52115 -9.90253 -9.30051 -8.28023 -6.44478 -0.04583 0.39929 0.76946 1.00292 1.26853 1.41992 1.43137 1.57298 2.01301 2.15980 2.20731 2.46711 3.02366 3.08777 3.24110 3.59093 3.76493 3.83535 3.97580 4.09196 4.20071 4.31961 4.42618 4.51532 4.54520 4.58946 4.67526 4.70302 4.76969 4.78421 4.81541 4.84765 4.87706 4.91047 5.02853 5.21175 5.23897 5.47597 5.50258 5.62628 5.71459 5.91755 6.00776 6.09948 6.61095 6.98091 7.02843 7.27734 8.80380 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.002710 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.413602 B =10328.401374 C =10824.123736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.008 3.992 3 C -0.235 4.235 4 C 0.201 3.799 5 N -0.371 5.371 6 C 0.021 3.979 7 C -0.073 4.073 8 C -0.149 4.149 9 C -0.232 4.232 10 C 0.525 3.475 11 O -0.553 6.553 12 O -0.358 6.358 13 C 0.218 3.782 14 H 0.009 0.991 15 C -0.141 4.141 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.127 3.873 25 C -0.090 4.090 26 N -0.377 5.377 27 O 0.121 5.879 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.163 0.837 36 H 0.021 0.979 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.271 0.729 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 -17.124 6.858 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.258 4.258 4 C -0.044 4.044 5 N -0.050 5.050 6 C -0.083 4.083 7 C -0.130 4.130 8 C -0.172 4.172 9 C -0.240 4.240 10 C 0.373 3.627 11 O -0.446 6.446 12 O -0.274 6.274 13 C 0.165 3.835 14 H 0.027 0.973 15 C -0.199 4.199 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.199 1.199 24 C 0.014 3.986 25 C -0.147 4.147 26 N -0.080 5.080 27 O 0.050 5.950 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.215 0.785 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.181 0.819 36 H 0.040 0.960 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.952 -18.008 6.503 29.129 hybrid contribution 0.821 1.582 -0.057 1.783 sum -21.131 -16.426 6.446 27.530 Atomic orbital electron populations 1.20727 0.79506 1.06816 1.06183 1.25181 0.98102 0.83860 0.98358 1.22647 0.88218 1.03364 1.11547 1.20575 0.87199 0.89115 1.07471 1.40093 1.10441 1.24864 1.29631 1.20850 0.86692 1.02295 0.98477 1.20387 1.03602 0.94136 0.94924 1.22074 1.00112 0.96052 0.98973 1.19365 0.96031 1.02070 1.06584 1.20511 0.80444 0.82128 0.79616 1.90695 1.68986 1.52987 1.31977 1.86547 1.27815 1.51550 1.61480 1.20364 0.90381 0.81368 0.91363 0.97280 1.21983 0.99278 1.01135 0.97497 1.21310 1.23823 1.14392 0.98862 0.91627 1.25853 0.98463 0.96600 0.97495 1.70025 1.41904 1.25540 1.18034 0.85108 0.77789 0.77877 0.78440 1.18833 1.19535 1.19936 1.20663 0.94717 0.88915 0.94351 1.20672 0.97626 1.01133 0.95280 1.74146 0.98658 1.14260 1.20918 1.84871 1.10002 1.33432 1.66671 0.87122 0.87794 0.86745 0.78506 0.90212 0.87668 0.91568 0.81929 0.95952 0.89807 0.93779 0.91947 0.88088 0.89855 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 10.45 71.24 0.74 0.71 16 2 C 0.01 0.09 7.48 25.00 0.19 0.28 16 3 C -0.23 -3.57 10.02 22.51 0.23 -3.35 16 4 C 0.20 4.70 6.52 133.98 0.87 5.58 16 5 N -0.37 -10.74 2.92 -326.32 -0.95 -11.70 16 6 C 0.02 0.62 6.82 40.91 0.28 0.90 16 7 C -0.07 -1.54 9.80 71.24 0.70 -0.84 16 8 C -0.15 -5.13 10.87 23.62 0.26 -4.88 16 9 C -0.23 -9.25 6.29 -19.05 -0.12 -9.37 16 10 C 0.53 25.65 7.92 70.15 0.56 26.20 16 11 O -0.55 -28.65 14.07 19.67 0.28 -28.37 16 12 O -0.36 -19.24 9.76 -56.98 -0.56 -19.80 16 13 C 0.22 12.81 2.57 29.85 0.08 12.88 16 14 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 15 C -0.14 -7.75 9.33 71.98 0.67 -7.08 16 16 C -0.55 -32.51 8.90 25.60 0.23 -32.28 16 17 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 18 C 0.02 0.87 5.30 84.66 0.45 1.32 16 19 N -0.92 -54.09 11.32 21.45 0.24 -53.84 16 20 Si 0.99 44.16 29.54 68.60 2.03 46.18 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 C 0.13 4.17 6.86 41.66 0.29 4.46 16 25 C -0.09 -2.42 9.01 71.23 0.64 -1.78 16 26 N -0.38 -8.66 11.88 -56.20 -0.67 -9.33 16 27 O 0.12 2.02 11.19 71.24 0.80 2.82 16 28 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.10 -0.20 8.14 -2.39 -0.02 -0.21 16 30 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.31 7.91 -2.39 -0.02 1.29 16 35 H 0.16 5.31 8.06 -2.91 -0.02 5.29 16 36 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.08 4.84 6.07 -2.39 -0.01 4.82 16 38 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.70 6.47 -2.39 -0.02 2.69 16 42 H 0.09 1.86 7.41 -2.39 -0.02 1.85 16 Total: -1.00 -77.48 362.51 8.26 -69.22 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.04 Total: 12.07 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 6.05 Total: -7.25 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.38 Total: -74.87 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: 0.52 Total: -45.35 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -77.48 8.26 -69.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.583 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds