Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35519 * 119.38617 * 2 1 4 4 H 0.97007 * 119.47949 * 0.02562 * 3 2 1 5 5 C 1.34649 * 121.04822 * 180.30251 * 3 2 1 6 6 O 1.21899 * 120.11070 * 179.74513 * 5 3 2 7 7 C 1.41951 * 119.78929 * 359.72194 * 5 3 2 8 8 C 1.43198 * 120.58360 * 179.97438 * 7 5 3 9 9 N 4.79024 * 137.78691 * 0.33830 * 3 1 2 10 10 C 1.39258 * 118.82850 * 0.02562 * 7 5 3 11 11 C 1.50696 * 120.51002 * 179.97438 * 10 7 5 12 12 C 1.35687 * 119.38967 * 179.74532 * 2 1 3 13 13 C 1.50703 * 119.92867 * 359.97438 * 12 2 1 14 14 C 1.52992 * 109.47195 * 94.72941 * 13 12 2 15 15 C 1.50700 * 109.47416 * 179.97438 * 14 13 12 16 16 O 1.20821 * 119.99635 * 0.02562 * 15 14 13 17 17 O 1.34235 * 120.00318 * 179.97438 * 15 14 13 18 18 C 1.45194 * 116.99927 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.47239 * 330.00128 * 18 17 15 20 20 C 1.52997 * 109.47339 * 90.00371 * 18 17 15 21 21 C 1.50708 * 109.47032 * 210.00472 * 18 17 15 22 22 H 1.08000 * 119.99723 * 359.97438 * 21 18 17 23 23 C 1.37873 * 119.99930 * 179.97438 * 21 18 17 24 24 N 1.31509 * 120.00195 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99968 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.46680 * 60.00159 * 25 23 21 27 27 H 1.48492 * 109.47298 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46944 * 300.00675 * 25 23 21 29 29 H 1.09001 * 109.47245 * 270.25063 * 1 2 3 30 30 H 1.08994 * 109.47336 * 30.25430 * 1 2 3 31 31 H 1.09006 * 109.47093 * 150.26174 * 1 2 3 32 32 H 1.08996 * 109.47347 * 270.01653 * 11 10 7 33 33 H 1.09005 * 109.47941 * 30.02354 * 11 10 7 34 34 H 1.09006 * 109.47016 * 150.02275 * 11 10 7 35 35 H 1.08997 * 109.47250 * 334.72298 * 13 12 2 36 36 H 1.09007 * 109.47050 * 214.72740 * 13 12 2 37 37 H 1.09005 * 109.47276 * 59.99327 * 14 13 12 38 38 H 1.09002 * 109.47423 * 299.99895 * 14 13 12 39 39 H 1.09002 * 109.47153 * 59.99705 * 20 18 17 40 40 H 1.09001 * 109.46832 * 299.99896 * 20 18 17 41 41 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 42 42 H 0.97006 * 120.00358 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1720 1.1808 0.0000 4 1 1.6704 2.0112 0.0004 5 6 3.5179 1.2199 -0.0061 6 8 4.0986 2.2917 -0.0107 7 6 4.2586 0.0089 -0.0067 8 6 5.6904 0.0306 -0.0136 9 7 6.8263 0.0478 -0.0190 10 6 3.5682 -1.2005 -0.0014 11 6 4.3165 -2.5085 -0.0024 12 6 2.1729 -1.1822 0.0053 13 6 1.4039 -2.4783 0.0116 14 6 1.2454 -2.9843 -1.4235 15 6 0.4770 -4.2806 -1.4172 16 8 0.0949 -4.7512 -0.3720 17 8 0.2161 -4.9119 -2.5727 18 6 -0.5290 -6.1554 -2.4908 19 1 -0.3137 -6.6462 -1.5417 20 6 -2.0272 -5.8593 -2.5835 21 6 -0.1244 -7.0592 -3.6269 22 1 0.6182 -6.7316 -4.3393 23 6 -0.7022 -8.3043 -3.7566 24 7 -1.6068 -8.7030 -2.8893 25 14 -0.2012 -9.4244 -5.1651 26 1 1.2531 -9.7112 -5.0761 27 1 -0.9632 -10.6961 -5.0814 28 1 -0.4955 -8.7556 -6.4580 29 1 -0.3634 0.0045 1.0276 30 1 -0.3634 0.8876 -0.5177 31 1 -0.3633 -0.8924 -0.5098 32 1 4.4925 -2.8257 -1.0302 33 1 5.2716 -2.3813 0.5073 34 1 3.7264 -3.2650 0.5151 35 1 0.4195 -2.3146 0.4500 36 1 1.9452 -3.2190 0.6003 37 1 2.2299 -3.1479 -1.8619 38 1 0.7042 -2.2436 -2.0123 39 1 -2.2426 -5.3684 -3.5326 40 1 -2.3198 -5.2056 -1.7618 41 1 -2.5866 -6.7928 -2.5225 42 1 -2.0137 -9.5789 -2.9808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -84.985294 kcal Electronic energy + Delta-G solvation = -25866.826326 eV Core-core repulsion = 22004.962361 eV Total energy + Delta-G solvation = -3861.863964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95034 -39.69747 -38.23298 -37.04840 -36.02561 -35.28316 -33.82777 -33.31753 -31.03093 -29.64991 -29.21149 -28.25807 -25.41011 -24.86688 -23.14872 -22.38341 -21.51067 -19.64456 -19.34705 -18.39139 -17.17243 -17.04545 -16.63675 -16.26257 -15.97987 -15.64538 -15.40008 -14.56136 -14.37726 -14.16552 -14.13551 -13.89928 -13.59793 -13.31192 -13.24698 -12.94845 -12.92865 -12.75504 -12.63432 -12.24054 -12.10807 -11.95078 -11.83686 -11.61511 -11.28658 -11.11887 -11.06970 -10.90531 -10.53012 -10.45660 -10.34117 -10.22602 -9.73927 -9.60651 -8.98704 -8.55019 -8.33929 -6.24395 -4.31672 -0.07503 1.28941 2.16297 2.52026 2.71364 2.88600 3.22296 3.26289 3.27964 3.46020 3.57548 3.72671 3.84440 4.05064 4.25595 4.29651 4.57990 4.73919 4.83946 4.85718 4.91523 5.06010 5.09129 5.17864 5.26654 5.33145 5.40435 5.47129 5.56985 5.72645 5.78736 5.91097 5.98508 6.15690 6.36199 6.55827 6.79745 6.83304 7.09380 7.42097 7.53436 7.54003 7.65492 7.86627 8.07353 8.54919 8.80969 9.34311 10.82845 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.002643 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.927051 B =10590.142643 C =11445.475406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.210 3.790 3 N -0.598 5.598 4 H 0.421 0.579 5 C 0.545 3.455 6 O -0.539 6.539 7 C -0.189 4.189 8 C 0.284 3.716 9 N -0.424 5.424 10 C 0.109 3.891 11 C -0.146 4.146 12 C -0.200 4.200 13 C -0.057 4.057 14 C -0.116 4.116 15 C 0.450 3.550 16 O -0.522 6.522 17 O -0.357 6.357 18 C 0.216 3.784 19 H 0.047 0.953 20 C -0.155 4.155 21 C -0.524 4.524 22 H 0.068 0.932 23 C 0.063 3.937 24 N -0.889 5.889 25 Si 0.911 3.089 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.016 0.984 41 H 0.099 0.901 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 16.168 6.468 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.098 3.902 3 N -0.229 5.229 4 H 0.260 0.740 5 C 0.344 3.656 6 O -0.420 6.420 7 C -0.197 4.197 8 C -0.030 4.030 9 N -0.101 5.101 10 C 0.102 3.898 11 C -0.202 4.202 12 C -0.205 4.205 13 C -0.094 4.094 14 C -0.154 4.154 15 C 0.293 3.707 16 O -0.413 6.413 17 O -0.273 6.273 18 C 0.164 3.836 19 H 0.065 0.935 20 C -0.212 4.212 21 C -0.562 4.562 22 H 0.086 0.914 23 C -0.139 4.139 24 N -0.527 5.527 25 Si 0.738 3.262 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.412 16.430 6.774 18.097 hybrid contribution -0.593 -0.305 -0.684 0.956 sum 2.819 16.125 6.090 17.466 Atomic orbital electron populations 1.21359 0.87163 1.05984 1.05308 1.20633 0.95372 0.85108 0.89118 1.43459 1.08524 1.09395 1.61554 0.73968 1.16506 0.80732 0.89777 0.78606 1.91012 1.67602 1.31038 1.52348 1.16525 0.86262 0.92913 1.23975 1.24594 0.91504 0.93592 0.93351 1.81222 1.11640 1.07084 1.10147 1.20580 0.92850 0.94569 0.81836 1.21276 1.00697 0.93438 1.04759 1.18811 0.92265 0.94619 1.14836 1.20289 1.00911 0.92034 0.96187 1.21378 1.01927 0.93676 0.98454 1.23299 0.77921 0.86343 0.83160 1.90610 1.50670 1.66746 1.33278 1.86489 1.68111 1.39734 1.32993 1.20624 0.87322 0.76504 0.99185 0.93530 1.22163 0.98814 1.02459 0.97796 1.20995 1.24287 0.99352 1.11520 0.91367 1.24878 0.94727 0.97500 0.96803 1.69878 1.26791 1.20403 1.35615 0.86339 0.78764 0.79323 0.81757 1.19947 1.21024 1.19929 0.88082 0.89663 0.87560 0.88229 0.90343 0.88604 0.89134 0.88909 0.88012 0.88184 0.94465 0.96527 0.88266 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.36 9.19 36.01 0.33 -0.03 16 2 C 0.21 1.08 6.80 -81.88 -0.56 0.53 16 3 N -0.60 -3.69 5.22 -10.88 -0.06 -3.74 16 4 H 0.42 1.53 8.75 -40.82 -0.36 1.17 16 5 C 0.55 5.76 7.72 -14.90 -0.12 5.64 16 6 O -0.54 -7.83 17.39 5.01 0.09 -7.74 16 7 C -0.19 -1.97 5.79 -106.17 -0.62 -2.59 16 8 C 0.28 3.71 13.49 -22.47 -0.30 3.41 16 9 N -0.42 -6.37 18.54 41.84 0.78 -5.59 16 10 C 0.11 0.88 5.96 -103.76 -0.62 0.26 16 11 C -0.15 -1.07 9.11 36.00 0.33 -0.74 16 12 C -0.20 -1.35 5.09 -105.05 -0.54 -1.89 16 13 C -0.06 -0.45 3.46 -27.89 -0.10 -0.55 16 14 C -0.12 -1.18 5.69 -27.89 -0.16 -1.34 16 15 C 0.45 7.67 7.93 36.01 0.29 7.95 16 16 O -0.52 -10.28 15.20 -18.75 -0.28 -10.57 16 17 O -0.36 -7.59 9.86 -39.27 -0.39 -7.98 16 18 C 0.22 5.41 2.56 -27.88 -0.07 5.34 16 19 H 0.05 1.29 7.16 -51.93 -0.37 0.92 16 20 C -0.15 -3.65 9.33 37.16 0.35 -3.30 16 21 C -0.52 -14.01 8.90 -34.44 -0.31 -14.32 16 22 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 24 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 25 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.11 0.35 6.04 -51.93 -0.31 0.04 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.61 7.15 -51.93 -0.37 0.24 16 34 H 0.10 0.63 6.11 -51.93 -0.32 0.31 16 35 H 0.09 0.67 6.28 -51.93 -0.33 0.34 16 36 H 0.09 0.79 6.19 -51.93 -0.32 0.47 16 37 H 0.10 0.92 8.00 -51.93 -0.42 0.51 16 38 H 0.10 0.81 7.78 -51.93 -0.40 0.40 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -35.02 361.07 -6.17 -41.18 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.17 Total: -2.58 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.18 Total: -0.05 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.35 Total: -33.01 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.59 Total: -26.29 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.02 -6.17 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.801 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds