Wall clock time and date at job start Tue Mar 31 2020 13:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50708 * 120.51441 * 180.26940 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.20818 * 120.00061 * 0.02562 * 15 14 13 17 17 O 1.34228 * 119.99729 * 179.97438 * 15 14 13 18 18 C 1.45202 * 116.99961 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.46817 * 30.00949 * 18 17 15 20 20 C 1.53000 * 109.47416 * 270.00713 * 18 17 15 21 21 C 1.50704 * 109.46882 * 150.00440 * 18 17 15 22 22 H 1.08005 * 119.99918 * 0.02562 * 21 18 17 23 23 C 1.37877 * 119.99751 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00175 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 119.99613 * 179.97438 * 23 21 18 26 26 H 1.48495 * 109.47159 * 90.00300 * 25 23 21 27 27 H 1.48501 * 109.47027 * 210.00057 * 25 23 21 28 28 H 1.48497 * 109.47363 * 330.00001 * 25 23 21 29 29 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 30 30 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 31 31 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 32 32 H 1.09002 * 109.46882 * 0.02562 * 11 10 7 33 33 H 1.09000 * 109.46735 * 120.00228 * 11 10 7 34 34 H 1.08995 * 109.47399 * 239.99982 * 11 10 7 35 35 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 36 36 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 37 37 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 38 38 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 39 39 H 1.09000 * 109.46857 * 179.97438 * 20 18 17 40 40 H 1.08998 * 109.46666 * 299.99886 * 20 18 17 41 41 H 1.08998 * 109.47001 * 59.99769 * 20 18 17 42 42 H 0.96997 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0019 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0971 -4.7505 -0.3952 17 8 0.2287 -4.9058 -2.5956 18 6 -0.5167 -6.1496 -2.5203 19 1 -1.1865 -6.1203 -1.6607 20 6 0.4573 -7.3197 -2.3682 21 6 -1.3241 -6.3284 -3.7802 22 1 -1.2808 -5.5821 -4.5597 23 6 -2.1178 -7.4448 -3.9377 24 7 -2.1708 -8.3532 -2.9883 25 14 -3.1190 -7.6660 -5.4991 26 1 -2.3122 -8.4037 -6.5041 27 1 -4.3512 -8.4358 -5.1921 28 1 -3.4896 -6.3346 -6.0424 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 5.3890 -2.3136 0.0029 33 1 4.0503 -3.0787 0.8919 34 1 4.0514 -3.0794 -0.8880 35 1 1.9424 -3.2203 0.5897 36 1 0.4175 -2.3156 0.4342 37 1 0.7140 -2.2388 -2.0266 38 1 2.2389 -3.1435 -1.8710 39 1 -0.1024 -8.2532 -2.3112 40 1 1.1269 -7.3489 -3.2278 41 1 1.0412 -7.1902 -1.4570 42 1 -2.7295 -9.1384 -3.0989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:10 Heat of formation + Delta-G solvation = -85.943567 kcal Electronic energy + Delta-G solvation = -25864.880598 eV Core-core repulsion = 22002.975080 eV Total energy + Delta-G solvation = -3861.905518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95088 -39.69829 -38.22951 -37.07830 -36.02485 -35.27732 -33.82630 -33.32120 -31.03020 -29.64722 -29.22096 -28.26670 -25.41046 -24.85216 -23.15136 -22.39409 -21.51361 -19.65171 -19.34137 -18.40201 -17.16314 -17.04317 -16.65868 -16.26119 -15.96066 -15.66612 -15.40421 -14.56140 -14.34596 -14.17337 -14.11323 -13.90853 -13.60993 -13.32851 -13.28120 -12.95882 -12.88898 -12.79784 -12.59110 -12.20849 -12.13593 -11.98251 -11.83641 -11.64405 -11.28405 -11.15425 -11.07942 -10.88764 -10.53878 -10.45420 -10.34296 -10.21934 -9.74221 -9.60660 -8.98227 -8.55862 -8.34238 -6.25038 -4.32264 -0.07227 1.28311 2.16155 2.51706 2.70356 2.88415 3.19852 3.25611 3.28493 3.44956 3.57499 3.71653 3.85038 4.03865 4.25183 4.29619 4.58308 4.74381 4.83579 4.86903 4.92517 5.03496 5.08228 5.15339 5.27097 5.30041 5.40935 5.53489 5.56445 5.71198 5.79948 5.87939 5.97183 6.14857 6.36243 6.56650 6.81128 6.84003 7.09755 7.41131 7.53233 7.53618 7.65695 7.86542 8.07100 8.54676 8.80696 9.33708 10.82276 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.002570 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.917615 B =10892.318497 C =11416.600774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.211 3.789 3 N -0.598 5.598 4 H 0.421 0.579 5 C 0.545 3.455 6 O -0.539 6.539 7 C -0.188 4.188 8 C 0.285 3.715 9 N -0.425 5.425 10 C 0.108 3.892 11 C -0.142 4.142 12 C -0.201 4.201 13 C -0.055 4.055 14 C -0.117 4.117 15 C 0.450 3.550 16 O -0.522 6.522 17 O -0.357 6.357 18 C 0.216 3.784 19 H 0.047 0.953 20 C -0.155 4.155 21 C -0.523 4.523 22 H 0.069 0.931 23 C 0.063 3.937 24 N -0.889 5.889 25 Si 0.911 3.089 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.016 0.984 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 14.679 6.841 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.098 3.902 3 N -0.229 5.229 4 H 0.261 0.739 5 C 0.344 3.656 6 O -0.420 6.420 7 C -0.196 4.196 8 C -0.030 4.030 9 N -0.102 5.102 10 C 0.101 3.899 11 C -0.198 4.198 12 C -0.206 4.206 13 C -0.093 4.093 14 C -0.155 4.155 15 C 0.293 3.707 16 O -0.413 6.413 17 O -0.273 6.273 18 C 0.164 3.836 19 H 0.065 0.935 20 C -0.213 4.213 21 C -0.561 4.561 22 H 0.087 0.913 23 C -0.140 4.140 24 N -0.526 5.526 25 Si 0.738 3.262 26 H -0.203 1.203 27 H -0.210 1.210 28 H -0.196 1.196 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.856 14.928 7.160 17.561 hybrid contribution -1.242 0.065 -0.744 1.449 sum 4.615 14.993 6.416 16.948 Atomic orbital electron populations 1.21366 0.87114 1.06049 1.05329 1.20642 0.95402 0.85099 0.89022 1.43461 1.08516 1.09415 1.61548 0.73950 1.16510 0.80744 0.89777 0.78598 1.91013 1.67613 1.31032 1.52315 1.16555 0.86231 0.92918 1.23908 1.24580 0.91510 0.93555 0.93330 1.81220 1.11643 1.07087 1.10228 1.20586 0.92839 0.94554 0.81919 1.21238 1.00216 0.93416 1.04944 1.18806 0.92235 0.94649 1.14933 1.20258 1.00965 0.91982 0.96112 1.21390 1.01782 0.93819 0.98486 1.23292 0.78050 0.86226 0.83162 1.90609 1.50074 1.67080 1.33511 1.86489 1.68024 1.39934 1.32886 1.20633 0.88818 0.75151 0.99042 0.93524 1.22166 0.98901 1.02896 0.97337 1.21029 1.25682 1.06992 1.02356 0.91328 1.24886 0.96525 0.95219 0.97323 1.69890 1.39394 1.10603 1.32763 0.86283 0.79258 0.78407 0.82246 1.20343 1.20963 1.19622 0.88068 0.89643 0.87491 0.90816 0.88363 0.88362 0.89077 0.89082 0.88071 0.88132 0.88271 0.94441 0.96498 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 9.20 36.01 0.33 -0.06 16 2 C 0.21 1.10 6.80 -81.88 -0.56 0.55 16 3 N -0.60 -3.72 5.22 -10.88 -0.06 -3.78 16 4 H 0.42 1.57 8.75 -40.82 -0.36 1.21 16 5 C 0.55 5.76 7.72 -14.89 -0.12 5.64 16 6 O -0.54 -7.83 17.39 5.01 0.09 -7.74 16 7 C -0.19 -1.96 5.79 -106.17 -0.62 -2.57 16 8 C 0.28 3.70 13.22 -22.47 -0.30 3.40 16 9 N -0.43 -6.34 18.54 41.83 0.78 -5.56 16 10 C 0.11 0.86 5.96 -103.75 -0.62 0.25 16 11 C -0.14 -1.01 8.84 36.01 0.32 -0.69 16 12 C -0.20 -1.35 5.09 -105.05 -0.54 -1.89 16 13 C -0.06 -0.44 3.48 -27.88 -0.10 -0.54 16 14 C -0.12 -1.19 5.70 -27.88 -0.16 -1.34 16 15 C 0.45 7.66 7.93 36.01 0.29 7.94 16 16 O -0.52 -10.27 15.20 -18.74 -0.28 -10.56 16 17 O -0.36 -7.58 9.86 -39.25 -0.39 -7.97 16 18 C 0.22 5.40 2.56 -27.88 -0.07 5.33 16 19 H 0.05 1.29 7.16 -51.93 -0.37 0.92 16 20 C -0.16 -3.71 9.33 37.16 0.35 -3.36 16 21 C -0.52 -13.92 8.90 -34.44 -0.31 -14.22 16 22 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 24 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 25 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.11 0.39 6.06 -51.93 -0.31 0.07 16 32 H 0.07 0.59 6.53 -51.93 -0.34 0.25 16 33 H 0.10 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.10 0.63 6.87 -51.93 -0.36 0.27 16 35 H 0.09 0.76 6.88 -51.93 -0.36 0.41 16 36 H 0.09 0.68 6.27 -51.93 -0.33 0.35 16 37 H 0.10 0.84 7.80 -51.93 -0.41 0.43 16 38 H 0.10 0.88 6.87 -51.93 -0.36 0.53 16 39 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -34.94 359.70 -6.15 -41.09 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.13 Total: -2.44 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.18 Total: -0.01 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.35 Total: -32.96 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.59 Total: -26.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.94 -6.15 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.854 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds