Wall clock time and date at job start Tue Mar 31 2020 13:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50708 * 120.51441 * 180.26940 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.20818 * 120.00061 * 0.02562 * 15 14 13 17 17 O 1.34228 * 119.99729 * 179.97438 * 15 14 13 18 18 C 1.45202 * 116.99961 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.46817 * 30.00949 * 18 17 15 20 20 C 1.53000 * 109.47416 * 270.00713 * 18 17 15 21 21 C 1.50704 * 109.46882 * 150.00440 * 18 17 15 22 22 H 1.08005 * 119.99918 * 0.02562 * 21 18 17 23 23 C 1.37877 * 119.99751 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00175 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 119.99613 * 179.97438 * 23 21 18 26 26 H 1.48495 * 109.47159 * 90.00300 * 25 23 21 27 27 H 1.48501 * 109.47027 * 210.00057 * 25 23 21 28 28 H 1.48497 * 109.47363 * 330.00001 * 25 23 21 29 29 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 30 30 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 31 31 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 32 32 H 1.09002 * 109.46882 * 0.02562 * 11 10 7 33 33 H 1.09000 * 109.46735 * 120.00228 * 11 10 7 34 34 H 1.08995 * 109.47399 * 239.99982 * 11 10 7 35 35 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 36 36 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 37 37 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 38 38 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 39 39 H 1.09000 * 109.46857 * 179.97438 * 20 18 17 40 40 H 1.08998 * 109.46666 * 299.99886 * 20 18 17 41 41 H 1.08998 * 109.47001 * 59.99769 * 20 18 17 42 42 H 0.96997 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0019 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0971 -4.7505 -0.3952 17 8 0.2287 -4.9058 -2.5956 18 6 -0.5167 -6.1496 -2.5203 19 1 -1.1865 -6.1203 -1.6607 20 6 0.4573 -7.3197 -2.3682 21 6 -1.3241 -6.3284 -3.7802 22 1 -1.2808 -5.5821 -4.5597 23 6 -2.1178 -7.4448 -3.9377 24 7 -2.1708 -8.3532 -2.9883 25 14 -3.1190 -7.6660 -5.4991 26 1 -2.3122 -8.4037 -6.5041 27 1 -4.3512 -8.4358 -5.1921 28 1 -3.4896 -6.3346 -6.0424 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 5.3890 -2.3136 0.0029 33 1 4.0503 -3.0787 0.8919 34 1 4.0514 -3.0794 -0.8880 35 1 1.9424 -3.2203 0.5897 36 1 0.4175 -2.3156 0.4342 37 1 0.7140 -2.2388 -2.0266 38 1 2.2389 -3.1435 -1.8710 39 1 -0.1024 -8.2532 -2.3112 40 1 1.1269 -7.3489 -3.2278 41 1 1.0412 -7.1902 -1.4570 42 1 -2.7295 -9.1384 -3.0989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:10 Heat of formation + Delta-G solvation = -108.217725 kcal Electronic energy + Delta-G solvation = -25865.846478 eV Core-core repulsion = 22002.975080 eV Total energy + Delta-G solvation = -3862.871398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64011 -41.14110 -39.06218 -37.96684 -37.54796 -36.12692 -35.24877 -34.59779 -31.98854 -31.22055 -29.91309 -28.88055 -27.39465 -25.77866 -23.94530 -23.11273 -22.95646 -21.12347 -20.09168 -19.11181 -18.73351 -18.28018 -17.81640 -17.21566 -16.93884 -16.88878 -16.68571 -16.17410 -15.13721 -14.97332 -14.85267 -14.75752 -14.57208 -14.33512 -14.15330 -14.07817 -14.01657 -13.82933 -13.44104 -13.38128 -13.20224 -13.05538 -12.90856 -12.74521 -12.70295 -12.56042 -12.34977 -12.30421 -12.11804 -11.82077 -11.46155 -11.36519 -11.19220 -10.91718 -10.85304 -10.53626 -9.05911 -8.23908 -6.39756 -0.69653 0.59537 1.41025 1.46201 1.46989 1.53392 1.58362 1.68138 1.88560 2.19146 2.48908 2.65401 2.95816 3.07312 3.35874 3.38828 3.68691 3.81239 4.02515 4.17298 4.27834 4.40648 4.41920 4.56885 4.64000 4.70915 4.75137 4.80053 4.85870 4.91330 4.91633 4.94420 5.13051 5.20042 5.22443 5.28234 5.38611 5.56061 5.62139 5.71184 5.72429 6.02305 6.23613 6.49273 6.67101 6.80460 7.11781 7.33919 8.83246 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.002570 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.917615 B =10892.318497 C =11416.600774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.246 3.754 3 N -0.581 5.581 4 H 0.437 0.563 5 C 0.544 3.456 6 O -0.589 6.589 7 C -0.226 4.226 8 C 0.299 3.701 9 N -0.477 5.477 10 C 0.133 3.867 11 C -0.147 4.147 12 C -0.208 4.208 13 C -0.048 4.048 14 C -0.106 4.106 15 C 0.444 3.556 16 O -0.551 6.551 17 O -0.368 6.368 18 C 0.219 3.781 19 H 0.011 0.989 20 C -0.144 4.144 21 C -0.546 4.546 22 H 0.068 0.932 23 C 0.016 3.984 24 N -0.917 5.917 25 Si 0.977 3.023 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 15.463 6.206 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.132 3.868 3 N -0.211 5.211 4 H 0.279 0.721 5 C 0.345 3.655 6 O -0.473 6.473 7 C -0.234 4.234 8 C -0.014 4.014 9 N -0.155 5.155 10 C 0.125 3.875 11 C -0.202 4.202 12 C -0.213 4.213 13 C -0.085 4.085 14 C -0.143 4.143 15 C 0.289 3.711 16 O -0.442 6.442 17 O -0.285 6.285 18 C 0.166 3.834 19 H 0.029 0.971 20 C -0.202 4.202 21 C -0.583 4.583 22 H 0.086 0.914 23 C -0.183 4.183 24 N -0.555 5.555 25 Si 0.801 3.199 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.187 1.187 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.981 15.730 6.535 17.492 hybrid contribution -0.809 -0.187 -0.463 0.950 sum 3.173 15.542 6.072 16.985 Atomic orbital electron populations 1.21583 0.84397 1.07298 1.06933 1.21083 0.96722 0.84060 0.84965 1.43303 1.07296 1.10664 1.59861 0.72122 1.16527 0.81881 0.88978 0.78130 1.90986 1.68907 1.32528 1.54919 1.16523 0.85016 0.93899 1.27969 1.25069 0.92164 0.92196 0.91936 1.81201 1.13057 1.08619 1.12659 1.20650 0.93346 0.93905 0.79577 1.21334 0.99481 0.93297 1.06127 1.18629 0.91343 0.94797 1.16495 1.20183 1.01651 0.92139 0.94566 1.21580 1.01747 0.90263 1.00725 1.24628 0.77474 0.87497 0.81507 1.90598 1.51304 1.68188 1.34159 1.86477 1.67968 1.38775 1.35279 1.20238 0.88882 0.77216 0.97078 0.97077 1.21992 0.98530 1.01590 0.98082 1.21338 1.26616 1.07407 1.02981 0.91394 1.25770 0.97379 0.94743 1.00432 1.70010 1.39939 1.11008 1.34564 0.85257 0.77670 0.78636 0.78323 1.19650 1.20575 1.18728 0.86025 0.87121 0.87521 0.92062 0.86895 0.87206 0.89399 0.88094 0.85321 0.86224 0.90500 0.93852 0.95383 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.07 9.20 71.24 0.66 0.59 16 2 C 0.25 1.58 6.80 41.40 0.28 1.86 16 3 N -0.58 -5.54 5.22 -306.53 -1.60 -7.14 16 4 H 0.44 1.83 8.75 -92.71 -0.81 1.01 16 5 C 0.54 10.98 7.72 85.18 0.66 11.63 16 6 O -0.59 -17.27 17.39 -4.99 -0.09 -17.36 16 7 C -0.23 -4.57 5.79 -20.87 -0.12 -4.69 16 8 C 0.30 8.04 13.22 88.33 1.17 9.21 16 9 N -0.48 -14.98 18.54 19.00 0.35 -14.63 16 10 C 0.13 1.85 5.96 -19.30 -0.11 1.73 16 11 C -0.15 -1.84 8.84 71.24 0.63 -1.21 16 12 C -0.21 -2.08 5.09 -20.14 -0.10 -2.18 16 13 C -0.05 -0.59 3.48 29.85 0.10 -0.48 16 14 C -0.11 -1.78 5.70 29.85 0.17 -1.61 16 15 C 0.44 14.37 7.93 71.24 0.56 14.93 16 16 O -0.55 -21.20 15.20 21.99 0.33 -20.86 16 17 O -0.37 -15.32 9.86 -51.40 -0.51 -15.83 16 18 C 0.22 11.05 2.56 29.85 0.08 11.13 16 19 H 0.01 0.64 7.16 -2.38 -0.02 0.63 16 20 C -0.14 -6.92 9.33 71.98 0.67 -6.25 16 21 C -0.55 -29.05 8.90 25.60 0.23 -28.82 16 22 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 23 C 0.02 0.86 5.30 84.66 0.45 1.31 16 24 N -0.92 -50.42 11.32 21.45 0.24 -50.18 16 25 Si 0.98 40.74 29.54 68.60 2.03 42.76 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 29 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.11 0.23 6.06 -2.39 -0.01 0.21 16 32 H 0.06 0.96 6.53 -2.39 -0.02 0.94 16 33 H 0.11 1.11 7.57 -2.39 -0.02 1.10 16 34 H 0.11 1.15 6.87 -2.39 -0.02 1.13 16 35 H 0.09 1.21 6.88 -2.39 -0.02 1.19 16 36 H 0.10 1.11 6.27 -2.39 -0.01 1.09 16 37 H 0.13 1.54 7.80 -2.39 -0.02 1.52 16 38 H 0.12 1.64 6.87 -2.39 -0.02 1.63 16 39 H 0.08 4.04 6.07 -2.39 -0.01 4.02 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -79.63 359.70 6.35 -73.28 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.28 Total: 2.80 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.32 Total: 7.16 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.00 Total: -71.95 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.26 Total: -54.05 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -79.63 6.35 -73.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.939 kcal (2) G-P(sol) polarization free energy of solvation -79.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds