Wall clock time and date at job start Tue Mar 31 2020 13:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 C 1.50695 * 109.46987 * 119.99181 * 2 1 3 5 5 C 1.35323 * 126.66278 * 120.00250 * 4 2 1 6 6 C 1.42270 * 103.91999 * 179.97438 * 5 4 2 7 7 C 1.48330 * 126.93612 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00330 * 353.56370 * 7 6 5 9 9 N 1.34781 * 120.00252 * 173.55797 * 7 6 5 10 10 C 1.46500 * 119.99455 * 4.05681 * 9 7 6 11 11 C 1.50703 * 109.47190 * 83.33995 * 10 9 7 12 12 H 1.08001 * 119.99522 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00336 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00347 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46988 * 89.99681 * 15 13 11 17 17 H 1.48493 * 109.47117 * 209.99990 * 15 13 11 18 18 H 1.48501 * 109.46695 * 330.00008 * 15 13 11 19 19 C 1.46496 * 120.00195 * 184.05611 * 9 7 6 20 20 C 1.50702 * 109.47121 * 85.13783 * 19 9 7 21 21 C 1.34518 * 125.78856 * 90.00068 * 20 19 9 22 22 C 1.41379 * 106.83968 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.84159 * 0.02562 * 22 21 20 24 24 O 1.34303 * 108.42347 * 359.73566 * 23 22 21 25 25 N 1.30981 * 106.12545 * 359.97438 * 6 5 4 26 26 O 1.20911 * 111.44035 * 359.74398 * 25 6 5 27 27 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46758 * 60.00667 * 1 2 3 29 29 H 1.08994 * 109.47225 * 300.00642 * 1 2 3 30 30 H 1.08989 * 109.47556 * 239.99709 * 2 1 3 31 31 H 1.09004 * 109.47574 * 59.99162 * 3 2 1 32 32 H 1.08999 * 109.47349 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46884 * 300.00020 * 3 2 1 34 34 H 1.07998 * 128.03509 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.46932 * 203.33523 * 10 9 7 36 36 H 1.08998 * 109.47632 * 323.34075 * 10 9 7 37 37 H 0.96998 * 120.00020 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.47099 * 205.14066 * 19 9 7 39 39 H 1.09005 * 109.47085 * 325.13685 * 19 9 7 40 40 H 1.08003 * 126.57543 * 359.96582 * 21 20 19 41 41 H 1.07996 * 126.57870 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.79259 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7102 1.2305 5 6 2.8134 -1.8148 1.2637 6 6 2.9920 -2.0661 2.6526 7 6 3.7716 -3.1689 3.2659 8 8 4.2435 -4.0421 2.5652 9 7 3.9565 -3.2025 4.6005 10 6 3.3140 -2.2003 5.4544 11 6 1.8984 -2.6249 5.7494 12 1 1.5156 -3.5486 5.3413 13 6 1.0921 -1.8341 6.5403 14 7 1.5585 -0.7095 7.0376 15 14 -0.6623 -2.3608 6.9065 16 1 -0.6839 -3.1859 8.1409 17 1 -1.5101 -1.1572 7.1007 18 1 -1.1875 -3.1579 5.7690 19 6 4.8000 -4.2410 5.1973 20 6 6.2412 -3.8022 5.1569 21 6 6.8782 -3.1045 6.1145 22 6 8.2057 -2.9130 5.6672 23 6 8.3003 -3.5045 4.4628 24 8 7.1089 -4.0463 4.1613 25 7 2.3290 -1.1270 3.2804 26 8 1.7977 -0.3670 2.5045 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8898 31 1 1.6766 1.9565 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.2092 -2.3752 0.4297 35 1 3.8683 -2.1098 6.3886 36 1 3.3054 -1.2382 4.9422 37 1 0.9911 -0.1530 7.5937 38 1 4.4986 -4.4037 6.2321 39 1 4.6866 -5.1683 4.6357 40 1 6.4565 -2.7572 7.0461 41 1 8.9924 -2.3910 6.1914 42 1 9.1855 -3.5420 3.8453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121367303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:28 Heat of formation + Delta-G solvation = 47.814496 kcal Electronic energy + Delta-G solvation = -27082.558315 eV Core-core repulsion = 23226.452982 eV Total energy + Delta-G solvation = -3856.105333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.45336 -42.21380 -38.99278 -35.97837 -35.26665 -33.43144 -32.73664 -32.49101 -30.65851 -29.90881 -27.27866 -27.22410 -26.06865 -23.86955 -22.85627 -22.73686 -21.42511 -21.33276 -20.17860 -18.29734 -17.26644 -17.03520 -16.76092 -16.46764 -16.03634 -15.90357 -15.18976 -14.82217 -14.61176 -14.46103 -14.05924 -13.71322 -13.24918 -13.21621 -12.89488 -12.53753 -12.48434 -12.44659 -12.24568 -12.17096 -11.80096 -11.47590 -11.37328 -11.31934 -11.10138 -10.93916 -10.80711 -10.27868 -10.07724 -9.83642 -9.80602 -9.61264 -9.51801 -8.96374 -8.45477 -8.22698 -7.91200 -6.08666 -4.12852 1.85624 1.98045 2.16721 2.86601 3.26690 3.31230 3.33734 3.37504 3.43933 3.75893 3.91153 4.39165 4.60117 4.72352 4.91582 5.02287 5.02819 5.25109 5.27139 5.31786 5.34964 5.47797 5.55878 5.60748 5.69635 5.76940 5.77176 5.89799 5.96957 5.98760 6.07687 6.16900 6.22749 6.24224 6.32851 6.38298 6.61084 6.79542 7.33846 7.44426 7.51736 7.82426 8.10894 8.13718 8.60935 8.87243 8.91426 9.51643 10.99474 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.005683 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.315434 B = 4925.883889 C = 7198.446304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.150 4.150 4 C -0.055 4.055 5 C -0.185 4.185 6 C -0.034 4.034 7 C 0.599 3.401 8 O -0.552 6.552 9 N -0.579 5.579 10 C 0.230 3.770 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.073 3.927 14 N -0.886 5.886 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.197 3.803 20 C -0.018 4.018 21 C -0.200 4.200 22 C -0.217 4.217 23 C -0.051 4.051 24 O -0.166 6.166 25 N -0.257 5.257 26 O 0.123 5.877 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.170 0.830 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 1.494 -10.224 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.117 4.117 5 C -0.207 4.207 6 C -0.193 4.193 7 C 0.386 3.614 8 O -0.431 6.431 9 N -0.309 5.309 10 C 0.111 3.889 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.130 4.130 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.074 3.926 20 C -0.070 4.070 21 C -0.220 4.220 22 C -0.236 4.236 23 C -0.119 4.119 24 O -0.061 6.061 25 N 0.046 4.954 26 O 0.043 5.957 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.188 0.812 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.153 1.257 -9.372 10.769 hybrid contribution -0.563 -0.372 -0.107 0.683 sum 4.590 0.885 -9.479 10.569 Atomic orbital electron populations 1.21888 0.93442 1.02716 1.02752 1.19675 0.96506 0.95856 0.90622 1.21886 1.01557 0.94517 1.02775 1.24335 1.01474 0.97904 0.88004 1.22271 1.03170 0.98786 0.96513 1.23280 1.04455 0.99659 0.91897 1.16967 0.78866 0.83353 0.82238 1.90698 1.51787 1.38363 1.62205 1.48238 1.45728 1.30918 1.06044 1.19878 0.92334 0.87064 0.89673 1.21263 0.96793 1.07062 1.31238 0.92647 1.24796 0.98137 0.94604 0.95477 1.69917 1.36612 1.12303 1.33542 0.86606 0.84737 0.78135 0.78614 1.20632 1.21023 1.20033 1.19755 0.80207 0.91636 1.01029 1.23175 0.93269 1.02872 0.87659 1.21676 0.94321 1.04136 1.01907 1.21787 0.98129 1.06311 0.97369 1.23975 0.88266 1.01274 0.98413 1.84109 1.19123 1.60958 1.41887 1.75002 1.05890 1.01037 1.13457 1.84941 1.54642 1.43163 1.12938 0.92112 0.91714 0.91566 0.88405 0.91586 0.92194 0.91701 0.81220 0.94587 0.91969 0.92728 0.86577 0.89102 0.83321 0.83804 0.78636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 2 C -0.01 -0.08 3.34 -91.77 -0.31 -0.38 16 3 C -0.15 -1.44 9.17 37.16 0.34 -1.10 16 4 C -0.05 -0.85 5.98 -35.35 -0.21 -1.06 16 5 C -0.19 -3.21 10.91 -39.07 -0.43 -3.64 16 6 C -0.03 -0.74 6.85 -82.53 -0.56 -1.30 16 7 C 0.60 13.77 7.60 -12.11 -0.09 13.68 16 8 O -0.55 -13.10 16.59 5.37 0.09 -13.01 16 9 N -0.58 -12.98 2.47 -177.36 -0.44 -13.42 16 10 C 0.23 5.72 4.75 -5.19 -0.02 5.69 16 11 C -0.52 -14.07 8.44 -34.44 -0.29 -14.36 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 14 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 15 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.20 3.77 5.89 -5.20 -0.03 3.74 16 20 C -0.02 -0.33 6.87 -35.62 -0.24 -0.58 16 21 C -0.20 -3.39 10.81 -39.70 -0.43 -3.82 16 22 C -0.22 -3.18 10.91 -39.71 -0.43 -3.62 16 23 C -0.05 -0.74 12.09 29.41 0.36 -0.38 16 24 O -0.17 -3.03 10.65 5.71 0.06 -2.97 16 25 N -0.26 -5.81 8.04 33.29 0.27 -5.54 16 26 O 0.12 2.37 11.18 17.25 0.19 2.56 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.86 8.12 -51.94 -0.42 0.44 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 35 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 36 H 0.06 1.67 5.41 -51.93 -0.28 1.39 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.03 8.04 -51.92 -0.42 1.61 16 39 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16 40 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 41 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.43 365.61 -6.42 -38.85 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.70 Total: 2.37 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.11 Total: -6.41 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.57 Total: -43.14 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.34 Total: -13.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.43 -6.42 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121367303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.662 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds