Wall clock time and date at job start Tue Mar 31 2020 13:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 C 1.50695 * 109.46987 * 119.99181 * 2 1 3 5 5 C 1.35323 * 126.66278 * 120.00250 * 4 2 1 6 6 C 1.42270 * 103.91999 * 179.97438 * 5 4 2 7 7 C 1.48330 * 126.93612 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00330 * 353.56370 * 7 6 5 9 9 N 1.34781 * 120.00252 * 173.55797 * 7 6 5 10 10 C 1.46500 * 119.99455 * 4.05681 * 9 7 6 11 11 C 1.50703 * 109.47190 * 83.33995 * 10 9 7 12 12 H 1.08001 * 119.99522 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00336 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00347 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46988 * 89.99681 * 15 13 11 17 17 H 1.48493 * 109.47117 * 209.99990 * 15 13 11 18 18 H 1.48501 * 109.46695 * 330.00008 * 15 13 11 19 19 C 1.46496 * 120.00195 * 184.05611 * 9 7 6 20 20 C 1.50702 * 109.47121 * 85.13783 * 19 9 7 21 21 C 1.34518 * 125.78856 * 90.00068 * 20 19 9 22 22 C 1.41379 * 106.83968 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.84159 * 0.02562 * 22 21 20 24 24 O 1.34303 * 108.42347 * 359.73566 * 23 22 21 25 25 N 1.30981 * 106.12545 * 359.97438 * 6 5 4 26 26 O 1.20911 * 111.44035 * 359.74398 * 25 6 5 27 27 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46758 * 60.00667 * 1 2 3 29 29 H 1.08994 * 109.47225 * 300.00642 * 1 2 3 30 30 H 1.08989 * 109.47556 * 239.99709 * 2 1 3 31 31 H 1.09004 * 109.47574 * 59.99162 * 3 2 1 32 32 H 1.08999 * 109.47349 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46884 * 300.00020 * 3 2 1 34 34 H 1.07998 * 128.03509 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.46932 * 203.33523 * 10 9 7 36 36 H 1.08998 * 109.47632 * 323.34075 * 10 9 7 37 37 H 0.96998 * 120.00020 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.47099 * 205.14066 * 19 9 7 39 39 H 1.09005 * 109.47085 * 325.13685 * 19 9 7 40 40 H 1.08003 * 126.57543 * 359.96582 * 21 20 19 41 41 H 1.07996 * 126.57870 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.79259 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7102 1.2305 5 6 2.8134 -1.8148 1.2637 6 6 2.9920 -2.0661 2.6526 7 6 3.7716 -3.1689 3.2659 8 8 4.2435 -4.0421 2.5652 9 7 3.9565 -3.2025 4.6005 10 6 3.3140 -2.2003 5.4544 11 6 1.8984 -2.6249 5.7494 12 1 1.5156 -3.5486 5.3413 13 6 1.0921 -1.8341 6.5403 14 7 1.5585 -0.7095 7.0376 15 14 -0.6623 -2.3608 6.9065 16 1 -0.6839 -3.1859 8.1409 17 1 -1.5101 -1.1572 7.1007 18 1 -1.1875 -3.1579 5.7690 19 6 4.8000 -4.2410 5.1973 20 6 6.2412 -3.8022 5.1569 21 6 6.8782 -3.1045 6.1145 22 6 8.2057 -2.9130 5.6672 23 6 8.3003 -3.5045 4.4628 24 8 7.1089 -4.0463 4.1613 25 7 2.3290 -1.1270 3.2804 26 8 1.7977 -0.3670 2.5045 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8898 31 1 1.6766 1.9565 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.2092 -2.3752 0.4297 35 1 3.8683 -2.1098 6.3886 36 1 3.3054 -1.2382 4.9422 37 1 0.9911 -0.1530 7.5937 38 1 4.4986 -4.4037 6.2321 39 1 4.6866 -5.1683 4.6357 40 1 6.4565 -2.7572 7.0461 41 1 8.9924 -2.3910 6.1914 42 1 9.1855 -3.5420 3.8453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121367303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:27 Heat of formation + Delta-G solvation = 29.548597 kcal Electronic energy + Delta-G solvation = -27083.350384 eV Core-core repulsion = 23226.452982 eV Total energy + Delta-G solvation = -3856.897402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.99495 -43.50871 -40.74381 -37.16787 -36.85375 -34.99049 -34.61861 -33.89976 -32.06726 -31.32904 -29.19612 -27.98865 -27.59055 -25.55608 -24.63542 -24.04245 -22.72528 -22.65520 -21.48026 -19.83959 -18.94938 -18.54667 -18.23644 -18.15677 -17.65917 -17.43805 -16.59419 -16.39097 -16.18609 -15.91084 -15.37251 -15.08766 -14.59506 -14.43043 -14.32624 -14.07321 -13.99789 -13.75375 -13.62322 -13.52286 -13.07912 -12.98730 -12.80034 -12.63762 -12.42065 -12.22646 -12.13197 -12.02657 -11.80469 -11.61992 -11.38872 -11.33855 -10.87536 -10.57775 -10.30052 -9.80240 -9.47295 -8.17666 -6.28238 0.29996 0.66272 0.76468 1.36678 1.38282 1.47228 1.61036 1.99298 2.05558 2.21713 2.34049 2.41433 3.09231 3.15272 3.45320 3.74991 3.91275 4.00898 4.10962 4.11508 4.18968 4.20046 4.33080 4.42388 4.46729 4.61783 4.73278 4.85571 4.87623 4.95749 4.98697 5.00671 5.01822 5.14302 5.19103 5.28652 5.40767 5.43863 5.55902 5.60341 5.72325 6.06215 6.17037 6.30346 6.73737 6.95865 7.34260 7.39673 8.90114 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.005683 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.315434 B = 4925.883889 C = 7198.446304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.148 4.148 4 C -0.031 4.031 5 C -0.192 4.192 6 C -0.063 4.063 7 C 0.591 3.409 8 O -0.567 6.567 9 N -0.582 5.582 10 C 0.248 3.752 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.033 3.967 14 N -0.912 5.912 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.195 3.805 20 C -0.049 4.049 21 C -0.202 4.202 22 C -0.223 4.223 23 C -0.041 4.041 24 O -0.190 6.190 25 N -0.299 5.299 26 O 0.118 5.882 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.194 0.806 35 H 0.023 0.977 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.176 0.824 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 2.110 -11.881 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 C -0.206 4.206 4 C -0.094 4.094 5 C -0.215 4.215 6 C -0.221 4.221 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.312 5.312 10 C 0.128 3.872 11 C -0.567 4.567 12 H 0.059 0.941 13 C -0.168 4.168 14 N -0.551 5.551 15 Si 0.774 3.226 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.205 1.205 19 C 0.073 3.927 20 C -0.100 4.100 21 C -0.222 4.222 22 C -0.242 4.242 23 C -0.108 4.108 24 O -0.086 6.086 25 N 0.004 4.996 26 O 0.038 5.962 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.211 0.789 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.395 1.859 -11.007 12.398 hybrid contribution -0.563 -0.517 0.319 0.828 sum 4.831 1.342 -10.688 11.806 Atomic orbital electron populations 1.21907 0.92596 1.02583 1.03639 1.20041 0.97110 0.96454 0.88900 1.21899 1.01404 0.93604 1.03662 1.25261 0.99352 0.96974 0.87840 1.22569 1.03904 0.99696 0.95288 1.23486 1.05075 0.99642 0.93877 1.17259 0.78884 0.83672 0.82308 1.90659 1.52646 1.39055 1.62355 1.48239 1.46016 1.31010 1.05909 1.19457 0.91584 0.87120 0.89050 1.21320 0.97757 1.06504 1.31167 0.94083 1.25443 1.01501 0.94573 0.95291 1.70006 1.37897 1.13108 1.34106 0.85721 0.80539 0.77928 0.78439 1.19550 1.20342 1.20480 1.19827 0.80934 0.90735 1.01218 1.22928 0.93109 1.05173 0.88800 1.21920 0.95616 1.03130 1.01577 1.22156 0.97719 1.06630 0.97703 1.24928 0.88009 0.99135 0.98753 1.84083 1.20414 1.61867 1.42225 1.74988 1.07417 1.02116 1.15126 1.84870 1.54170 1.42631 1.14513 0.92778 0.88476 0.93081 0.85367 0.93005 0.92484 0.88554 0.78910 0.95879 0.93631 0.92527 0.85751 0.89251 0.83207 0.80700 0.74236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 71.98 0.66 -1.96 16 2 C -0.01 -0.11 3.34 -11.54 -0.04 -0.15 16 3 C -0.15 -2.45 9.17 71.98 0.66 -1.79 16 4 C -0.03 -0.95 5.98 25.01 0.15 -0.80 16 5 C -0.19 -6.60 10.91 22.60 0.25 -6.35 16 6 C -0.06 -2.82 6.85 42.96 0.29 -2.52 16 7 C 0.59 28.15 7.60 86.93 0.66 28.81 16 8 O -0.57 -27.62 16.59 -3.71 -0.06 -27.68 16 9 N -0.58 -27.22 2.47 -833.34 -2.06 -29.28 16 10 C 0.25 12.90 4.75 85.63 0.41 13.31 16 11 C -0.53 -29.24 8.44 25.60 0.22 -29.02 16 12 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 13 C 0.03 1.80 5.46 84.65 0.46 2.26 16 14 N -0.91 -52.22 13.29 21.45 0.28 -51.93 16 15 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 C 0.20 7.80 5.89 85.63 0.50 8.30 16 20 C -0.05 -1.85 6.87 24.83 0.17 -1.68 16 21 C -0.20 -6.86 10.81 22.19 0.24 -6.62 16 22 C -0.22 -6.16 10.91 22.19 0.24 -5.92 16 23 C -0.04 -1.10 12.09 66.97 0.81 -0.29 16 24 O -0.19 -6.90 10.65 -2.49 -0.03 -6.93 16 25 N -0.30 -13.99 8.04 -49.52 -0.40 -14.39 16 26 O 0.12 4.64 11.18 71.90 0.80 5.45 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.19 5.52 8.06 -2.91 -0.02 5.50 16 35 H 0.02 1.24 8.02 -2.39 -0.02 1.22 16 36 H 0.05 2.57 5.41 -2.39 -0.01 2.56 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.12 4.58 8.04 -2.38 -0.02 4.56 16 39 H 0.09 3.52 7.52 -2.38 -0.02 3.50 16 40 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.24 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -72.52 365.61 7.28 -65.23 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.03 Total: 17.94 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.68 Total: -4.43 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -2.17 Total: -95.60 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.72 Total: -29.16 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.52 7.28 -65.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121367303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.782 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds