Wall clock time and date at job start Tue Mar 31 2020 12:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 120.00602 * 2 1 4 4 C 1.46868 * 119.99858 * 179.97438 * 2 1 3 5 5 C 1.40078 * 120.09069 * 354.20437 * 4 2 1 6 6 C 1.36588 * 119.90072 * 180.02562 * 5 4 2 7 7 C 1.39282 * 120.09575 * 0.02562 * 6 5 4 8 8 N 1.39153 * 119.90455 * 179.70333 * 7 6 5 9 9 C 1.34773 * 119.99912 * 36.21932 * 8 7 6 10 10 O 1.21354 * 120.00448 * 355.23559 * 9 8 7 11 11 C 1.49364 * 119.99742 * 175.23518 * 9 8 7 12 12 O 1.21356 * 120.00272 * 0.02562 * 11 9 8 13 13 N 1.34780 * 120.00022 * 180.02562 * 11 9 8 14 14 C 1.46501 * 119.99939 * 179.97438 * 13 11 9 15 15 H 1.09001 * 109.47233 * 324.99835 * 14 13 11 16 16 C 1.52994 * 109.47165 * 85.00157 * 14 13 11 17 17 C 1.50698 * 109.47226 * 205.00169 * 14 13 11 18 18 H 1.08006 * 119.99899 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00302 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00358 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99987 * 359.97438 * 19 17 14 22 22 H 1.48502 * 109.47220 * 89.99948 * 21 19 17 23 23 H 1.48498 * 109.47053 * 210.00316 * 21 19 17 24 24 H 1.48500 * 109.46760 * 329.99912 * 21 19 17 25 25 C 1.39243 * 120.18886 * 359.97345 * 7 6 5 26 26 C 1.36623 * 120.10126 * 0.02562 * 25 7 6 27 27 C 1.50690 * 120.05177 * 179.97438 * 26 25 7 28 28 H 1.08997 * 109.47071 * 240.00529 * 1 2 3 29 29 H 1.09007 * 109.46628 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47652 * 120.00165 * 1 2 3 31 31 H 1.08004 * 120.05071 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.95133 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99369 * 216.22058 * 8 7 6 34 34 H 0.96998 * 119.99856 * 0.02562 * 13 11 9 35 35 H 1.09001 * 109.47308 * 59.99724 * 16 14 13 36 36 H 1.08999 * 109.47390 * 180.02562 * 16 14 13 37 37 H 1.08999 * 109.47244 * 300.00064 * 16 14 13 38 38 H 0.96992 * 120.00467 * 179.97438 * 20 19 17 39 39 H 1.07994 * 119.94923 * 179.97438 * 25 7 6 40 40 H 1.09003 * 109.47182 * 263.25358 * 27 26 25 41 41 H 1.09005 * 109.47308 * 23.25160 * 27 26 25 42 42 H 1.09006 * 109.47278 * 143.25248 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 1.5482 -2.4830 0.1235 6 6 2.2350 -3.6636 0.1241 7 6 3.6226 -3.6644 0.0032 8 7 4.3189 -4.8692 0.0105 9 6 3.7851 -5.9595 -0.5748 10 8 2.6619 -5.9143 -1.0320 11 6 4.5761 -7.2236 -0.6609 12 8 5.6992 -7.2690 -0.2033 13 7 4.0426 -8.3139 -1.2467 14 6 4.8187 -9.5535 -1.3316 15 1 5.8718 -9.3136 -1.4780 16 6 4.6522 -10.3492 -0.0355 17 6 4.3249 -10.3767 -2.4933 18 1 3.5138 -10.0131 -3.1068 19 6 4.9078 -11.5946 -2.7724 20 7 4.4766 -12.3133 -3.7860 21 14 6.3102 -12.2240 -1.7110 22 1 5.7602 -13.0248 -0.5879 23 1 7.2091 -13.0745 -2.5319 24 1 7.0762 -11.0728 -1.1695 25 6 4.3155 -2.4629 -0.1192 26 6 3.6364 -1.2774 -0.1207 27 6 4.3874 0.0224 -0.2527 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3633 1.0278 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4723 -2.4832 0.2185 32 1 1.7015 -4.5977 0.2192 33 1 5.1884 -4.9242 0.4370 34 1 3.1451 -8.2775 -1.6128 35 1 3.5991 -10.5891 0.1109 36 1 5.2300 -11.2713 -0.0985 37 1 5.0094 -9.7538 0.8047 38 1 4.8869 -13.1698 -3.9825 39 1 5.3914 -2.4680 -0.2122 40 1 4.5528 0.4485 0.7368 41 1 5.3478 -0.1603 -0.7348 42 1 3.8049 0.7190 -0.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122857129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:42 Heat of formation + Delta-G solvation = -71.856069 kcal Electronic energy + Delta-G solvation = -25547.091234 eV Core-core repulsion = 21685.796595 eV Total energy + Delta-G solvation = -3861.294639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21589 -40.23014 -38.91373 -37.92878 -35.69993 -34.91626 -33.16494 -32.50445 -31.33982 -30.17163 -29.42489 -27.20963 -25.65089 -25.20507 -23.27063 -22.31870 -20.88465 -20.15227 -19.85421 -18.93939 -17.31750 -17.05335 -16.78216 -16.23015 -15.93443 -15.71604 -15.41889 -15.20435 -14.66712 -14.45961 -14.40986 -13.94601 -13.64146 -13.42850 -13.37725 -13.08441 -13.02005 -12.70079 -12.51791 -12.39250 -12.33185 -12.18257 -12.00064 -11.66354 -11.46880 -11.31760 -10.91284 -10.56906 -10.30440 -9.84491 -9.75266 -9.38504 -9.34020 -9.12945 -8.89331 -8.51261 -8.44657 -6.29330 -4.33870 0.26659 1.12226 1.49270 2.12833 2.41275 3.15915 3.28677 3.30431 3.33038 3.52942 3.78346 3.83568 4.22380 4.41768 4.51652 4.74570 4.76370 4.90442 4.97874 5.04133 5.05187 5.10516 5.19548 5.40706 5.50425 5.57368 5.58269 5.80456 5.94981 6.00357 6.09201 6.14875 6.19274 6.25498 6.37563 6.60755 6.64476 6.78692 6.97087 7.03532 7.27041 7.31547 7.55887 7.91854 8.30310 8.40020 8.70201 9.28650 10.82559 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.002351 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.560377 B =11908.734891 C =12306.525187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.460 6.460 4 C -0.200 4.200 5 C -0.046 4.046 6 C -0.143 4.143 7 C 0.189 3.811 8 N -0.652 5.652 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.659 5.659 14 C 0.235 3.765 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.540 4.540 18 H 0.084 0.916 19 C 0.080 3.920 20 N -0.887 5.887 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.262 1.262 25 C -0.161 4.161 26 C -0.003 4.003 27 C -0.122 4.122 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.426 0.574 34 H 0.409 0.591 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 21.396 9.794 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.276 3.724 3 O -0.337 6.337 4 C -0.202 4.202 5 C -0.065 4.065 6 C -0.163 4.163 7 C 0.094 3.906 8 N -0.299 5.299 9 C 0.294 3.706 10 O -0.368 6.368 11 C 0.276 3.724 12 O -0.413 6.413 13 N -0.308 5.308 14 C 0.132 3.868 15 H 0.072 0.928 16 C -0.221 4.221 17 C -0.578 4.578 18 H 0.102 0.898 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.715 3.285 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.186 1.186 25 C -0.182 4.182 26 C -0.004 4.004 27 C -0.178 4.178 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.245 0.755 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.733 21.629 9.623 24.142 hybrid contribution 0.657 -0.801 0.483 1.143 sum -4.076 20.828 10.106 23.507 Atomic orbital electron populations 1.22257 0.93913 1.05012 1.04608 1.22338 0.91553 0.87563 0.70975 1.90497 1.71572 1.34639 1.37007 1.20321 0.93916 0.94934 1.11026 1.21065 1.00094 0.90763 0.94566 1.21056 0.92744 0.99827 1.02692 1.18050 0.91945 0.84972 0.95664 1.43182 1.23540 1.07724 1.55411 1.20877 0.86937 0.85159 0.77673 1.90749 1.18161 1.83565 1.44330 1.19640 0.86843 0.84459 0.81467 1.90739 1.18613 1.84093 1.47851 1.46147 1.19817 1.10838 1.54007 1.19331 0.93143 0.79903 0.94412 0.92781 1.22470 1.01662 0.99737 0.98256 1.20982 1.21114 1.03522 1.12214 0.89849 1.24819 0.96534 0.96052 0.94990 1.69855 1.41541 1.13088 1.27884 0.86883 0.82416 0.79466 0.79785 1.20143 1.21962 1.18640 1.20618 1.00632 0.90501 1.06409 1.19712 0.92445 0.95418 0.92799 1.21101 0.99336 0.94044 1.03304 0.88870 0.89822 0.88799 0.84614 0.83583 0.73579 0.75508 0.92396 0.92964 0.94359 0.92090 0.84761 0.90490 0.92028 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 9.00 36.00 0.32 -0.79 16 2 C 0.40 3.59 7.15 -30.82 -0.22 3.37 16 3 O -0.46 -5.32 14.06 5.55 0.08 -5.25 16 4 C -0.20 -1.94 5.87 -105.04 -0.62 -2.56 16 5 C -0.05 -0.42 9.41 -39.49 -0.37 -0.79 16 6 C -0.14 -1.59 8.62 -39.79 -0.34 -1.94 16 7 C 0.19 2.17 6.28 -83.78 -0.53 1.64 16 8 N -0.65 -7.87 5.29 -10.28 -0.05 -7.93 16 9 C 0.51 7.66 7.72 -11.63 -0.09 7.57 16 10 O -0.50 -8.01 13.94 5.49 0.08 -7.94 16 11 C 0.50 8.85 7.85 -11.62 -0.09 8.76 16 12 O -0.53 -10.43 16.14 5.49 0.09 -10.34 16 13 N -0.66 -12.82 5.06 -55.39 -0.28 -13.10 16 14 C 0.23 5.33 2.15 -69.09 -0.15 5.19 16 15 H 0.05 1.32 6.64 -51.93 -0.34 0.98 16 16 C -0.16 -3.43 8.96 37.15 0.33 -3.10 16 17 C -0.54 -14.19 9.31 -34.44 -0.32 -14.51 16 18 H 0.08 2.33 7.98 -52.48 -0.42 1.91 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 20 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 21 Si 0.89 20.83 24.37 -169.99 -4.14 16.68 16 22 H -0.27 -6.24 6.87 56.52 0.39 -5.86 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 25 C -0.16 -1.62 9.52 -39.79 -0.38 -2.00 16 26 C 0.00 -0.03 5.89 -104.54 -0.62 -0.64 16 27 C -0.12 -1.11 8.72 36.00 0.31 -0.79 16 28 H 0.09 0.36 7.90 -51.93 -0.41 -0.05 16 29 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.14 0.83 6.98 -52.48 -0.37 0.46 16 32 H 0.15 1.74 6.27 -52.49 -0.33 1.41 16 33 H 0.43 4.44 8.30 -40.82 -0.34 4.10 16 34 H 0.41 7.51 8.01 -40.82 -0.33 7.19 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 42 H 0.09 0.94 5.86 -51.93 -0.30 0.63 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -31.20 351.50 -6.15 -37.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.14 Total: 8.61 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.85 Total: 1.50 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.44 Total: -45.93 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.24 Total: -23.52 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.20 -6.15 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122857129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.507 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds