Wall clock time and date at job start Tue Mar 31 2020 12:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 120.00155 * 2 1 4 4 C 1.46863 * 119.99458 * 179.97438 * 2 1 3 5 5 C 1.40069 * 120.09760 * 353.81859 * 4 2 1 6 6 C 1.36584 * 119.90219 * 180.02562 * 5 4 2 7 7 C 1.39278 * 120.09517 * 0.02562 * 6 5 4 8 8 N 1.39154 * 119.90183 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00270 * 37.06001 * 8 7 6 10 10 O 1.21367 * 119.99805 * 355.33613 * 9 8 7 11 11 C 1.49370 * 120.00500 * 175.33178 * 9 8 7 12 12 O 1.21363 * 119.99284 * 0.02562 * 11 9 8 13 13 N 1.34766 * 120.00145 * 180.02562 * 11 9 8 14 14 C 1.46507 * 119.99801 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.47307 * 35.00080 * 14 13 11 16 16 C 1.53000 * 109.46889 * 274.99485 * 14 13 11 17 17 C 1.50706 * 109.47036 * 155.00059 * 14 13 11 18 18 H 1.07995 * 119.99814 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99980 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99969 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00175 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46948 * 270.00036 * 21 19 17 23 23 H 1.48499 * 109.47155 * 29.99879 * 21 19 17 24 24 H 1.48497 * 109.47210 * 150.00140 * 21 19 17 25 25 C 1.39238 * 120.19208 * 0.25660 * 7 6 5 26 26 C 1.36618 * 120.09465 * 359.43708 * 25 7 6 27 27 C 1.50699 * 120.04985 * 180.25071 * 26 25 7 28 28 H 1.08996 * 109.47462 * 174.50089 * 1 2 3 29 29 H 1.09005 * 109.46900 * 294.50149 * 1 2 3 30 30 H 1.09003 * 109.47107 * 54.49290 * 1 2 3 31 31 H 1.08000 * 120.05130 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.95403 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99936 * 217.05292 * 8 7 6 34 34 H 0.97000 * 120.00090 * 359.97438 * 13 11 9 35 35 H 1.09005 * 109.46637 * 60.00455 * 16 14 13 36 36 H 1.09002 * 109.46969 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47369 * 300.00116 * 16 14 13 38 38 H 0.97002 * 120.00274 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.94857 * 179.72396 * 25 7 6 40 40 H 1.08998 * 109.47493 * 262.93888 * 27 26 25 41 41 H 1.09000 * 109.47100 * 22.93730 * 27 26 25 42 42 H 1.08996 * 109.47430 * 142.93240 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5489 -2.4825 0.1316 6 6 2.2358 -3.6631 0.1322 7 6 3.6226 -3.6643 0.0032 8 7 4.3184 -4.8694 0.0048 9 6 3.7883 -5.9544 -0.5936 10 8 2.6689 -5.9042 -1.0597 11 6 4.5786 -7.2188 -0.6834 12 8 5.6979 -7.2690 -0.2169 13 7 4.0487 -8.3035 -1.2823 14 6 4.8236 -9.5438 -1.3698 15 1 5.4317 -9.6564 -0.4723 16 6 5.7332 -9.4911 -2.5989 17 6 3.8839 -10.7158 -1.4902 18 1 2.8163 -10.5531 -1.5000 19 6 4.3872 -11.9957 -1.5877 20 7 5.6873 -12.1937 -1.5761 21 14 3.2225 -13.4485 -1.7362 22 1 2.8835 -13.9517 -0.3808 23 1 1.9814 -13.0192 -2.4295 24 1 3.8766 -14.5297 -2.5162 25 6 4.3153 -2.4629 -0.1214 26 6 3.6356 -1.2778 -0.1292 27 6 4.3858 0.0215 -0.2698 28 1 -0.3634 -1.0229 -0.0985 29 1 -0.3633 0.4262 0.9352 30 1 -0.3633 0.5969 -0.8366 31 1 0.4736 -2.4825 0.2320 32 1 1.7028 -4.5970 0.2327 33 1 5.1850 -4.9285 0.4366 34 1 3.1539 -8.2634 -1.6547 35 1 6.4129 -8.6434 -2.5118 36 1 6.3094 -10.4140 -2.6643 37 1 5.1250 -9.3786 -3.4965 38 1 6.0414 -13.0942 -1.6444 39 1 5.3911 -2.4682 -0.2167 40 1 4.5473 0.4565 0.7165 41 1 5.3481 -0.1643 -0.7468 42 1 3.8049 0.7123 -0.8808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122857340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:47 Heat of formation + Delta-G solvation = -78.757074 kcal Electronic energy + Delta-G solvation = -25483.095129 eV Core-core repulsion = 21621.501240 eV Total energy + Delta-G solvation = -3861.593889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14244 -40.16567 -38.78309 -37.82783 -35.54479 -34.77388 -33.17522 -32.49530 -31.31241 -29.45664 -29.15532 -27.18379 -25.49378 -25.24069 -23.21678 -22.23453 -20.81794 -20.09862 -19.71824 -18.82470 -17.31513 -16.99293 -16.55999 -16.15002 -15.80253 -15.41606 -15.33345 -15.17142 -14.71885 -14.39794 -14.34166 -13.84249 -13.58544 -13.44085 -13.25135 -12.98644 -12.62481 -12.55151 -12.47813 -12.37713 -12.15222 -11.87449 -11.55939 -11.28966 -11.16529 -11.06992 -10.87915 -10.51156 -10.40019 -10.32785 -9.76313 -9.27177 -9.19762 -9.08128 -8.68370 -8.45209 -8.21963 -6.22699 -4.32713 0.29816 1.15263 1.59918 2.16922 2.52365 3.20326 3.27278 3.29798 3.42655 3.61305 3.81799 3.94276 4.27919 4.42819 4.54437 4.71762 4.92259 4.94634 5.03758 5.07961 5.10524 5.14380 5.24696 5.43055 5.52666 5.58264 5.61699 5.83586 5.99576 6.03516 6.13820 6.27510 6.64237 6.66139 6.77266 6.91704 6.95982 7.12442 7.29001 7.30673 7.55374 7.67777 7.77730 7.98898 8.33743 8.52135 8.77403 9.34596 10.83304 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.002316 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.633292 B =12087.174641 C =12800.155995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.397 3.603 3 O -0.462 6.462 4 C -0.201 4.201 5 C -0.048 4.048 6 C -0.142 4.142 7 C 0.191 3.809 8 N -0.653 5.653 9 C 0.510 3.490 10 O -0.500 6.500 11 C 0.495 3.505 12 O -0.533 6.533 13 N -0.666 5.666 14 C 0.262 3.738 15 H 0.055 0.945 16 C -0.149 4.149 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.284 1.284 25 C -0.161 4.161 26 C -0.003 4.003 27 C -0.120 4.120 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.426 0.574 34 H 0.403 0.597 35 H 0.016 0.984 36 H 0.095 0.905 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 20.854 3.403 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.277 3.723 3 O -0.339 6.339 4 C -0.202 4.202 5 C -0.067 4.067 6 C -0.162 4.162 7 C 0.095 3.905 8 N -0.300 5.300 9 C 0.293 3.707 10 O -0.373 6.373 11 C 0.273 3.727 12 O -0.412 6.412 13 N -0.315 5.315 14 C 0.161 3.839 15 H 0.073 0.927 16 C -0.208 4.208 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.197 1.197 24 H -0.210 1.210 25 C -0.182 4.182 26 C -0.004 4.004 27 C -0.176 4.176 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.264 0.736 34 H 0.237 0.763 35 H 0.036 0.964 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.452 21.094 3.338 22.310 hybrid contribution -0.586 -1.067 -0.075 1.219 sum -7.038 20.028 3.263 21.477 Atomic orbital electron populations 1.22246 0.94035 1.04874 1.04786 1.22319 0.91508 0.87597 0.70899 1.90499 1.71502 1.34671 1.37246 1.20319 0.93939 0.94936 1.11034 1.21123 1.00100 0.90800 0.94644 1.21040 0.92816 0.99757 1.02627 1.18062 0.91952 0.85065 0.95426 1.43217 1.23881 1.07970 1.54908 1.21070 0.86870 0.85262 0.77516 1.90735 1.18437 1.83487 1.44621 1.19598 0.86886 0.84473 0.81756 1.90743 1.18860 1.83548 1.48050 1.46525 1.19878 1.11706 1.53352 1.19007 0.90619 0.77971 0.96315 0.92737 1.22106 0.99162 1.01688 0.97800 1.21176 0.93009 0.90570 1.52842 0.91716 1.24880 0.95389 0.98914 0.94407 1.69888 1.11152 1.22158 1.48784 0.86381 0.80601 0.81519 0.78254 1.20460 1.19712 1.20985 1.20626 1.00635 0.90533 1.06381 1.19710 0.92422 0.95417 0.92828 1.21079 0.99280 0.93993 1.03293 0.89761 0.88786 0.88977 0.84470 0.83677 0.73553 0.76273 0.96450 0.88642 0.95051 0.92391 0.84750 0.90473 0.92045 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 10.16 36.01 0.37 -0.81 16 2 C 0.40 3.70 7.15 -30.82 -0.22 3.48 16 3 O -0.46 -5.43 14.09 5.55 0.08 -5.35 16 4 C -0.20 -2.02 5.87 -105.05 -0.62 -2.63 16 5 C -0.05 -0.45 9.34 -39.49 -0.37 -0.82 16 6 C -0.14 -1.66 8.61 -39.79 -0.34 -2.00 16 7 C 0.19 2.28 6.26 -83.78 -0.52 1.76 16 8 N -0.65 -8.39 5.29 -10.27 -0.05 -8.44 16 9 C 0.51 8.08 7.71 -11.63 -0.09 7.99 16 10 O -0.50 -8.40 14.00 5.48 0.08 -8.33 16 11 C 0.49 9.41 7.85 -11.63 -0.09 9.32 16 12 O -0.53 -11.25 16.15 5.49 0.09 -11.16 16 13 N -0.67 -13.67 5.06 -55.39 -0.28 -13.95 16 14 C 0.26 6.38 2.56 -69.08 -0.18 6.20 16 15 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 16 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 17 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -23.96 11.32 55.43 0.63 -23.34 16 21 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.16 -1.69 9.52 -39.80 -0.38 -2.07 16 26 C 0.00 -0.03 5.89 -104.53 -0.62 -0.64 16 27 C -0.12 -1.12 8.69 36.01 0.31 -0.81 16 28 H 0.08 0.37 5.71 -51.93 -0.30 0.07 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 0.89 6.04 -52.49 -0.32 0.57 16 32 H 0.15 1.82 6.35 -52.49 -0.33 1.48 16 33 H 0.43 4.83 8.30 -40.82 -0.34 4.49 16 34 H 0.40 7.66 8.01 -40.82 -0.33 7.33 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 39 H 0.13 1.17 8.04 -52.49 -0.42 0.74 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 42 H 0.09 0.94 5.92 -51.93 -0.31 0.63 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -30.03 356.45 -7.03 -37.06 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.12 Total: 9.70 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.80 Total: 3.31 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.29 Total: -45.73 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.24 Total: -24.84 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.03 -7.03 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122857340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds