Wall clock time and date at job start Tue Mar 31 2020 12:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 120.00155 * 2 1 4 4 C 1.46863 * 119.99458 * 179.97438 * 2 1 3 5 5 C 1.40069 * 120.09760 * 353.81859 * 4 2 1 6 6 C 1.36584 * 119.90219 * 180.02562 * 5 4 2 7 7 C 1.39278 * 120.09517 * 0.02562 * 6 5 4 8 8 N 1.39154 * 119.90183 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00270 * 37.06001 * 8 7 6 10 10 O 1.21367 * 119.99805 * 355.33613 * 9 8 7 11 11 C 1.49370 * 120.00500 * 175.33178 * 9 8 7 12 12 O 1.21363 * 119.99284 * 0.02562 * 11 9 8 13 13 N 1.34766 * 120.00145 * 180.02562 * 11 9 8 14 14 C 1.46507 * 119.99801 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.47307 * 35.00080 * 14 13 11 16 16 C 1.53000 * 109.46889 * 274.99485 * 14 13 11 17 17 C 1.50706 * 109.47036 * 155.00059 * 14 13 11 18 18 H 1.07995 * 119.99814 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99980 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99969 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00175 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46948 * 270.00036 * 21 19 17 23 23 H 1.48499 * 109.47155 * 29.99879 * 21 19 17 24 24 H 1.48497 * 109.47210 * 150.00140 * 21 19 17 25 25 C 1.39238 * 120.19208 * 0.25660 * 7 6 5 26 26 C 1.36618 * 120.09465 * 359.43708 * 25 7 6 27 27 C 1.50699 * 120.04985 * 180.25071 * 26 25 7 28 28 H 1.08996 * 109.47462 * 174.50089 * 1 2 3 29 29 H 1.09005 * 109.46900 * 294.50149 * 1 2 3 30 30 H 1.09003 * 109.47107 * 54.49290 * 1 2 3 31 31 H 1.08000 * 120.05130 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.95403 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99936 * 217.05292 * 8 7 6 34 34 H 0.97000 * 120.00090 * 359.97438 * 13 11 9 35 35 H 1.09005 * 109.46637 * 60.00455 * 16 14 13 36 36 H 1.09002 * 109.46969 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47369 * 300.00116 * 16 14 13 38 38 H 0.97002 * 120.00274 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.94857 * 179.72396 * 25 7 6 40 40 H 1.08998 * 109.47493 * 262.93888 * 27 26 25 41 41 H 1.09000 * 109.47100 * 22.93730 * 27 26 25 42 42 H 1.08996 * 109.47430 * 142.93240 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5489 -2.4825 0.1316 6 6 2.2358 -3.6631 0.1322 7 6 3.6226 -3.6643 0.0032 8 7 4.3184 -4.8694 0.0048 9 6 3.7883 -5.9544 -0.5936 10 8 2.6689 -5.9042 -1.0597 11 6 4.5786 -7.2188 -0.6834 12 8 5.6979 -7.2690 -0.2169 13 7 4.0487 -8.3035 -1.2823 14 6 4.8236 -9.5438 -1.3698 15 1 5.4317 -9.6564 -0.4723 16 6 5.7332 -9.4911 -2.5989 17 6 3.8839 -10.7158 -1.4902 18 1 2.8163 -10.5531 -1.5000 19 6 4.3872 -11.9957 -1.5877 20 7 5.6873 -12.1937 -1.5761 21 14 3.2225 -13.4485 -1.7362 22 1 2.8835 -13.9517 -0.3808 23 1 1.9814 -13.0192 -2.4295 24 1 3.8766 -14.5297 -2.5162 25 6 4.3153 -2.4629 -0.1214 26 6 3.6356 -1.2778 -0.1292 27 6 4.3858 0.0215 -0.2698 28 1 -0.3634 -1.0229 -0.0985 29 1 -0.3633 0.4262 0.9352 30 1 -0.3633 0.5969 -0.8366 31 1 0.4736 -2.4825 0.2320 32 1 1.7028 -4.5970 0.2327 33 1 5.1850 -4.9285 0.4366 34 1 3.1539 -8.2634 -1.6547 35 1 6.4129 -8.6434 -2.5118 36 1 6.3094 -10.4140 -2.6643 37 1 5.1250 -9.3786 -3.4965 38 1 6.0414 -13.0942 -1.6444 39 1 5.3911 -2.4682 -0.2167 40 1 4.5473 0.4565 0.7165 41 1 5.3481 -0.1643 -0.7468 42 1 3.8049 0.7123 -0.8808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122857340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:46 Heat of formation + Delta-G solvation = -98.070164 kcal Electronic energy + Delta-G solvation = -25483.932607 eV Core-core repulsion = 21621.501240 eV Total energy + Delta-G solvation = -3862.431367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26362 -41.16200 -40.04754 -38.93542 -37.08875 -36.11703 -34.35750 -33.93496 -32.13293 -31.10273 -30.08166 -27.93655 -27.39184 -26.60260 -24.23733 -23.37564 -22.18646 -21.26271 -20.88643 -20.22726 -18.48208 -18.16158 -17.78237 -17.34686 -17.23229 -16.96665 -16.48389 -16.12439 -15.98263 -15.46770 -15.25295 -15.07282 -14.95544 -14.48053 -14.40195 -14.22040 -13.84844 -13.76496 -13.36797 -13.11912 -13.07617 -12.98807 -12.92358 -12.85184 -12.79415 -12.69576 -12.29786 -12.19733 -12.12247 -11.47570 -11.17438 -10.77588 -10.62897 -10.44302 -10.01146 -9.92449 -9.37646 -8.20785 -6.38099 -0.57041 0.30036 0.34587 1.18888 1.41817 1.46025 1.47149 1.57458 2.08896 2.38265 2.65335 2.71184 3.10323 3.16492 3.42296 3.69114 3.76368 4.09400 4.15717 4.25654 4.37505 4.60656 4.67567 4.68737 4.69515 4.79026 4.83140 4.87364 5.00502 5.01687 5.08697 5.15263 5.25292 5.28550 5.29056 5.41917 5.50958 5.58541 5.72786 5.81160 5.92143 6.02730 6.45208 6.58751 6.63448 6.72256 7.04157 7.34199 8.85300 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.002316 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.633292 B =12087.174641 C =12800.155995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.490 6.490 4 C -0.205 4.205 5 C -0.038 4.038 6 C -0.155 4.155 7 C 0.168 3.832 8 N -0.637 5.637 9 C 0.522 3.478 10 O -0.510 6.510 11 C 0.496 3.504 12 O -0.556 6.556 13 N -0.669 5.669 14 C 0.268 3.732 15 H 0.016 0.984 16 C -0.137 4.137 17 C -0.552 4.552 18 H 0.072 0.928 19 C 0.019 3.981 20 N -0.913 5.913 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.263 1.263 24 H -0.282 1.282 25 C -0.156 4.156 26 C -0.016 4.016 27 C -0.116 4.116 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.170 0.830 32 H 0.136 0.864 33 H 0.432 0.568 34 H 0.411 0.589 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.268 0.732 39 H 0.151 0.849 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 21.938 3.346 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.278 3.722 3 O -0.369 6.369 4 C -0.206 4.206 5 C -0.056 4.056 6 C -0.175 4.175 7 C 0.074 3.926 8 N -0.284 5.284 9 C 0.304 3.696 10 O -0.384 6.384 11 C 0.275 3.725 12 O -0.436 6.436 13 N -0.318 5.318 14 C 0.166 3.834 15 H 0.034 0.966 16 C -0.196 4.196 17 C -0.590 4.590 18 H 0.090 0.910 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.187 1.187 24 H -0.208 1.208 25 C -0.176 4.176 26 C -0.017 4.017 27 C -0.172 4.172 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.187 0.813 32 H 0.154 0.846 33 H 0.272 0.728 34 H 0.247 0.753 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.168 0.832 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.348 22.227 3.293 23.970 hybrid contribution 0.020 -1.264 -0.006 1.264 sum -8.328 20.963 3.287 22.795 Atomic orbital electron populations 1.22282 0.90972 1.06376 1.05855 1.22781 0.93125 0.86676 0.69668 1.90499 1.72434 1.35406 1.38603 1.20629 0.94087 0.95759 1.10160 1.21393 1.01605 0.89586 0.93064 1.21102 0.92790 1.00233 1.03330 1.18223 0.92342 0.84735 0.97344 1.43013 1.23986 1.07553 1.53848 1.20225 0.86341 0.84762 0.78302 1.90738 1.18531 1.83521 1.45589 1.20081 0.86730 0.85195 0.80460 1.90726 1.20066 1.84194 1.48601 1.46261 1.20042 1.11239 1.54274 1.18628 0.90531 0.79545 0.94704 0.96629 1.21938 0.98991 1.00663 0.98003 1.21485 0.93520 0.91248 1.52728 0.91025 1.25727 0.96831 1.01584 0.93991 1.70017 1.12821 1.22758 1.49458 0.85348 0.78776 0.78071 0.78191 1.20232 1.18719 1.20788 1.20756 1.01480 0.89898 1.05499 1.19969 0.93046 0.95749 0.92910 1.21040 0.99658 0.93220 1.03281 0.88012 0.87387 0.88101 0.81302 0.84644 0.72796 0.75295 0.96065 0.90797 0.94115 0.92320 0.83175 0.90371 0.90671 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 10.16 71.24 0.72 -0.97 16 2 C 0.40 6.60 7.15 27.95 0.20 6.80 16 3 O -0.49 -10.94 14.09 -3.07 -0.04 -10.99 16 4 C -0.20 -3.72 5.87 -20.14 -0.12 -3.84 16 5 C -0.04 -0.63 9.34 22.33 0.21 -0.42 16 6 C -0.15 -3.37 8.61 22.13 0.19 -3.17 16 7 C 0.17 3.82 6.26 38.47 0.24 4.06 16 8 N -0.64 -15.86 5.29 -304.77 -1.61 -17.47 16 9 C 0.52 16.25 7.71 87.25 0.67 16.93 16 10 O -0.51 -16.71 14.00 -3.30 -0.05 -16.75 16 11 C 0.50 18.94 7.85 87.25 0.68 19.63 16 12 O -0.56 -23.80 16.15 -3.29 -0.05 -23.85 16 13 N -0.67 -27.64 5.06 -447.51 -2.27 -29.91 16 14 C 0.27 13.34 2.56 44.25 0.11 13.45 16 15 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 16 C -0.14 -6.63 9.26 71.98 0.67 -5.96 16 17 C -0.55 -28.47 8.73 25.60 0.22 -28.24 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C 0.02 1.01 5.30 84.65 0.45 1.46 16 20 N -0.91 -50.29 11.32 21.45 0.24 -50.05 16 21 Si 0.97 41.01 29.54 68.60 2.03 43.03 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 C -0.16 -3.05 9.52 22.13 0.21 -2.84 16 26 C -0.02 -0.31 5.89 -19.81 -0.12 -0.42 16 27 C -0.12 -2.02 8.69 71.24 0.62 -1.40 16 28 H 0.10 0.50 5.71 -2.39 -0.01 0.48 16 29 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.17 1.59 6.04 -2.91 -0.02 1.57 16 32 H 0.14 3.24 6.35 -2.91 -0.02 3.22 16 33 H 0.43 9.51 8.30 -92.71 -0.77 8.74 16 34 H 0.41 15.54 8.01 -92.71 -0.74 14.80 16 35 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.15 2.35 8.04 -2.91 -0.02 2.32 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.07 8.02 -2.39 -0.02 1.05 16 42 H 0.08 1.60 5.92 -2.39 -0.01 1.58 16 Total: -1.00 -64.85 356.45 2.80 -62.05 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.42 Total: 28.88 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 4.97 Total: 15.06 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.63 Total: -97.42 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.14 Total: -51.59 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -64.85 2.80 -62.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122857340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.021 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds