Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00044 * 3 2 1 5 5 H 1.48503 * 109.47034 * 29.99727 * 3 2 1 6 6 H 1.48499 * 109.47581 * 150.00273 * 3 2 1 7 7 C 1.37881 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99948 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46851 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.35898 * 117.00069 * 179.97438 * 11 10 9 13 13 C 1.38815 * 120.02058 * 0.30045 * 12 11 10 14 14 C 1.38165 * 120.08224 * 180.31876 * 13 12 11 15 15 C 1.38177 * 120.12555 * 359.68367 * 14 13 12 16 16 C 1.38882 * 120.03596 * 359.97438 * 15 14 13 17 17 N 1.39923 * 120.03840 * 180.02562 * 16 15 14 18 18 C 1.34780 * 119.99921 * 324.91791 * 17 16 15 19 19 O 1.21291 * 120.00045 * 4.62918 * 18 17 16 20 20 C 1.50695 * 120.00087 * 184.61979 * 18 17 16 21 21 H 1.09006 * 110.21659 * 320.47677 * 20 18 17 22 22 C 1.54474 * 110.24657 * 82.50121 * 20 18 17 23 23 C 1.54628 * 101.76666 * 144.41628 * 22 20 18 24 24 C 1.51278 * 104.19450 * 335.20241 * 23 22 20 25 25 O 1.21287 * 124.94705 * 196.22965 * 24 23 22 26 26 N 1.34422 * 110.12055 * 16.25568 * 24 23 22 27 27 C 1.38582 * 120.02081 * 180.02562 * 12 11 10 28 28 H 0.97000 * 120.00360 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47064 * 60.00219 * 9 7 2 30 30 H 1.09001 * 109.46679 * 300.00164 * 9 7 2 31 31 H 1.09002 * 109.47609 * 59.99701 * 10 9 7 32 32 H 1.09007 * 109.47139 * 300.00103 * 10 9 7 33 33 H 1.07994 * 119.95638 * 0.02562 * 13 12 11 34 34 H 1.07995 * 119.93837 * 179.70001 * 14 13 12 35 35 H 1.07996 * 119.97491 * 180.02562 * 15 14 13 36 36 H 0.97000 * 120.00044 * 144.92828 * 17 16 15 37 37 H 1.09005 * 110.97228 * 262.53724 * 22 20 18 38 38 H 1.08998 * 110.96807 * 26.29879 * 22 20 18 39 39 H 1.09002 * 110.49043 * 216.52981 * 23 22 20 40 40 H 1.08998 * 110.60167 * 93.93599 * 23 22 20 41 41 H 0.96994 * 124.35702 * 180.43453 * 26 24 23 42 42 H 1.08004 * 120.06130 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0010 11 8 5.4505 -2.6365 0.0009 12 6 6.0675 -3.8473 0.0014 13 6 5.3119 -5.0118 -0.0045 14 6 5.9378 -6.2435 0.0026 15 6 7.3174 -6.3204 0.0089 16 6 8.0784 -5.1586 0.0076 17 7 9.4754 -5.2363 0.0135 18 6 10.0925 -6.2250 0.6905 19 8 9.4374 -7.0949 1.2245 20 6 11.5964 -6.2496 0.7839 21 1 12.0377 -5.9504 -0.1669 22 6 12.0771 -5.3153 1.9162 23 6 13.2969 -6.0894 2.4672 24 6 13.0192 -7.5301 2.0991 25 8 13.5805 -8.4911 2.5814 26 7 12.0600 -7.5906 1.1592 27 6 7.4514 -3.9203 0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6803 -0.8889 31 1 3.6585 -3.1502 -0.8892 32 1 3.6578 -3.1505 0.8908 33 1 4.2335 -4.9548 -0.0098 34 1 5.3477 -7.1480 0.0029 35 1 7.8041 -7.2844 0.0140 36 1 9.9998 -4.5786 -0.4696 37 1 12.3771 -4.3450 1.5204 38 1 11.3089 -5.2022 2.6811 39 1 13.3623 -5.9781 3.5496 40 1 14.2159 -5.7449 1.9930 41 1 11.7180 -8.4145 0.7784 42 1 8.0409 -3.0154 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122907227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = -81.979276 kcal Electronic energy + Delta-G solvation = -25043.138025 eV Core-core repulsion = 21181.404411 eV Total energy + Delta-G solvation = -3861.733614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51278 -40.28699 -39.35300 -37.44493 -36.54691 -34.91839 -33.38409 -31.90761 -31.21510 -30.41275 -29.51371 -28.19229 -25.36834 -23.75504 -22.77591 -22.34394 -21.11997 -20.86257 -20.43139 -18.68783 -18.23939 -17.68887 -16.86068 -16.43454 -16.22187 -15.87179 -15.66648 -15.48046 -15.27431 -14.98077 -14.37642 -14.19583 -14.18062 -13.78665 -13.63225 -13.34834 -13.24444 -13.01287 -12.63195 -12.58326 -12.07759 -11.92605 -11.77397 -11.56964 -10.99038 -10.90486 -10.57627 -10.42927 -10.34557 -10.22839 -10.02255 -9.86314 -9.64847 -9.39419 -8.67002 -8.52340 -7.95218 -6.17568 -4.18862 1.12339 1.52420 1.99970 2.07278 2.36057 2.89521 3.24467 3.32114 3.36605 3.63324 3.67718 3.74888 3.80764 4.04096 4.23879 4.34731 4.36346 4.71202 4.86753 5.04166 5.14842 5.16338 5.20672 5.22989 5.27268 5.31620 5.51170 5.59523 5.85772 5.86557 6.09658 6.13412 6.21378 6.34554 6.43655 6.46182 6.55719 6.78138 6.94616 7.02700 7.17161 7.56142 7.58048 7.72704 7.80796 8.34169 8.83048 9.42350 10.94884 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.002035 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.872926 B =13758.065198 C =14431.128809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.318 6.318 12 C 0.161 3.839 13 C -0.218 4.218 14 C -0.063 4.063 15 C -0.166 4.166 16 C 0.170 3.830 17 N -0.664 5.664 18 C 0.504 3.496 19 O -0.504 6.504 20 C 0.117 3.883 21 H 0.110 0.890 22 C -0.123 4.123 23 C -0.155 4.155 24 C 0.524 3.476 25 O -0.528 6.528 26 N -0.711 5.711 27 C -0.185 4.185 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.417 0.583 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.471 -10.231 -0.900 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.002 4.002 11 O -0.231 6.231 12 C 0.114 3.886 13 C -0.237 4.237 14 C -0.082 4.082 15 C -0.187 4.187 16 C 0.077 3.923 17 N -0.309 5.309 18 C 0.289 3.711 19 O -0.377 6.377 20 C 0.007 3.993 21 H 0.128 0.872 22 C -0.161 4.161 23 C -0.195 4.195 24 C 0.310 3.690 25 O -0.404 6.404 26 N -0.367 5.367 27 C -0.206 4.206 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.257 0.743 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 26.312 -10.967 -0.167 28.507 hybrid contribution 0.012 0.818 -0.522 0.970 sum 26.324 -10.150 -0.689 28.221 Atomic orbital electron populations 1.69886 1.06279 1.27255 1.50029 1.24939 0.94769 0.99224 0.94104 0.86753 0.80435 0.83295 0.78742 1.20062 1.21159 1.18777 1.20834 0.88297 0.94962 1.52497 0.90718 1.19587 0.96954 0.90168 0.97892 1.23120 0.74340 1.02041 1.00689 1.86110 1.24230 1.25685 1.87107 1.18770 0.91495 0.85332 0.93019 1.21460 1.01006 0.92229 1.09028 1.20837 0.93908 0.97177 0.96235 1.21027 0.93638 0.97802 1.06184 1.17250 0.81607 0.93331 1.00133 1.43346 1.05466 1.30865 1.51251 1.20836 0.90171 0.81843 0.78267 1.90783 1.66226 1.36196 1.44474 1.21569 0.91137 0.85313 1.01270 0.87224 1.22650 0.98114 0.98372 0.96959 1.22379 0.99786 0.92632 1.04677 1.20842 0.78555 0.91669 0.77949 1.90791 1.52563 1.42091 1.54908 1.45957 1.40161 1.07972 1.42635 1.19973 0.92320 0.96578 1.11692 0.92410 0.95404 0.95836 0.92361 0.92342 0.84817 0.85567 0.84787 0.75132 0.87687 0.89017 0.87323 0.87097 0.74346 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.53 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 10 C 0.07 1.42 4.68 37.16 0.17 1.59 16 11 O -0.32 -5.80 10.13 -19.42 -0.20 -6.00 16 12 C 0.16 2.51 6.68 -39.24 -0.26 2.25 16 13 C -0.22 -3.16 9.04 -39.39 -0.36 -3.52 16 14 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 15 C -0.17 -2.08 8.69 -39.37 -0.34 -2.43 16 16 C 0.17 1.93 6.30 -83.72 -0.53 1.40 16 17 N -0.66 -4.80 5.34 -9.88 -0.05 -4.85 16 18 C 0.50 3.98 6.86 -10.99 -0.08 3.90 16 19 O -0.50 -6.16 14.01 5.55 0.08 -6.08 16 20 C 0.12 0.51 3.93 -68.16 -0.27 0.25 16 21 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 22 C -0.12 -0.38 6.67 -25.10 -0.17 -0.55 16 23 C -0.15 -0.65 6.86 -26.74 -0.18 -0.83 16 24 C 0.52 4.47 8.43 -10.86 -0.09 4.37 16 25 O -0.53 -6.93 18.03 5.55 0.10 -6.83 16 26 N -0.71 -4.90 5.47 -53.88 -0.29 -5.20 16 27 C -0.18 -2.35 9.90 -39.25 -0.39 -2.73 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 32 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 33 H 0.13 1.92 6.29 -52.49 -0.33 1.59 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.68 6.22 -52.49 -0.33 1.36 16 36 H 0.41 1.42 8.82 -40.82 -0.36 1.06 16 37 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.09 0.42 7.90 -51.93 -0.41 0.01 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.42 2.96 8.96 -40.82 -0.37 2.59 16 42 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -35.94 356.04 -7.81 -43.76 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.48 Total: 0.24 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.44 Total: -10.76 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.43 Total: -36.09 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.02 Total: -18.91 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.94 -7.81 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122907227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.222 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds