Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00044 * 3 2 1 5 5 H 1.48503 * 109.47034 * 29.99727 * 3 2 1 6 6 H 1.48499 * 109.47581 * 150.00273 * 3 2 1 7 7 C 1.37881 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99948 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46851 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.35898 * 117.00069 * 179.97438 * 11 10 9 13 13 C 1.38815 * 120.02058 * 0.30045 * 12 11 10 14 14 C 1.38165 * 120.08224 * 180.31876 * 13 12 11 15 15 C 1.38177 * 120.12555 * 359.68367 * 14 13 12 16 16 C 1.38882 * 120.03596 * 359.97438 * 15 14 13 17 17 N 1.39923 * 120.03840 * 180.02562 * 16 15 14 18 18 C 1.34780 * 119.99921 * 324.91791 * 17 16 15 19 19 O 1.21291 * 120.00045 * 4.62918 * 18 17 16 20 20 C 1.50695 * 120.00087 * 184.61979 * 18 17 16 21 21 H 1.09006 * 110.21659 * 320.47677 * 20 18 17 22 22 C 1.54474 * 110.24657 * 82.50121 * 20 18 17 23 23 C 1.54628 * 101.76666 * 144.41628 * 22 20 18 24 24 C 1.51278 * 104.19450 * 335.20241 * 23 22 20 25 25 O 1.21287 * 124.94705 * 196.22965 * 24 23 22 26 26 N 1.34422 * 110.12055 * 16.25568 * 24 23 22 27 27 C 1.38582 * 120.02081 * 180.02562 * 12 11 10 28 28 H 0.97000 * 120.00360 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47064 * 60.00219 * 9 7 2 30 30 H 1.09001 * 109.46679 * 300.00164 * 9 7 2 31 31 H 1.09002 * 109.47609 * 59.99701 * 10 9 7 32 32 H 1.09007 * 109.47139 * 300.00103 * 10 9 7 33 33 H 1.07994 * 119.95638 * 0.02562 * 13 12 11 34 34 H 1.07995 * 119.93837 * 179.70001 * 14 13 12 35 35 H 1.07996 * 119.97491 * 180.02562 * 15 14 13 36 36 H 0.97000 * 120.00044 * 144.92828 * 17 16 15 37 37 H 1.09005 * 110.97228 * 262.53724 * 22 20 18 38 38 H 1.08998 * 110.96807 * 26.29879 * 22 20 18 39 39 H 1.09002 * 110.49043 * 216.52981 * 23 22 20 40 40 H 1.08998 * 110.60167 * 93.93599 * 23 22 20 41 41 H 0.96994 * 124.35702 * 180.43453 * 26 24 23 42 42 H 1.08004 * 120.06130 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0010 11 8 5.4505 -2.6365 0.0009 12 6 6.0675 -3.8473 0.0014 13 6 5.3119 -5.0118 -0.0045 14 6 5.9378 -6.2435 0.0026 15 6 7.3174 -6.3204 0.0089 16 6 8.0784 -5.1586 0.0076 17 7 9.4754 -5.2363 0.0135 18 6 10.0925 -6.2250 0.6905 19 8 9.4374 -7.0949 1.2245 20 6 11.5964 -6.2496 0.7839 21 1 12.0377 -5.9504 -0.1669 22 6 12.0771 -5.3153 1.9162 23 6 13.2969 -6.0894 2.4672 24 6 13.0192 -7.5301 2.0991 25 8 13.5805 -8.4911 2.5814 26 7 12.0600 -7.5906 1.1592 27 6 7.4514 -3.9203 0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6803 -0.8889 31 1 3.6585 -3.1502 -0.8892 32 1 3.6578 -3.1505 0.8908 33 1 4.2335 -4.9548 -0.0098 34 1 5.3477 -7.1480 0.0029 35 1 7.8041 -7.2844 0.0140 36 1 9.9998 -4.5786 -0.4696 37 1 12.3771 -4.3450 1.5204 38 1 11.3089 -5.2022 2.6811 39 1 13.3623 -5.9781 3.5496 40 1 14.2159 -5.7449 1.9930 41 1 11.7180 -8.4145 0.7784 42 1 8.0409 -3.0154 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122907227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = -109.192501 kcal Electronic energy + Delta-G solvation = -25044.318079 eV Core-core repulsion = 21181.404411 eV Total energy + Delta-G solvation = -3862.913668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14837 -41.16924 -40.32155 -38.49565 -37.24771 -35.81324 -35.33351 -32.93361 -32.30426 -31.41947 -30.60598 -28.87327 -27.12178 -24.47702 -23.80559 -23.26746 -22.22470 -21.60896 -21.41899 -19.70406 -19.11806 -18.66189 -18.22792 -17.21627 -17.07431 -17.00742 -16.85130 -16.65404 -16.26720 -15.96379 -15.74526 -15.11076 -14.83106 -14.74455 -14.57143 -14.46977 -14.27200 -14.12635 -13.61706 -13.42092 -13.30283 -13.12707 -12.79946 -12.58466 -12.31921 -12.09681 -12.09264 -11.77016 -11.66429 -11.45519 -11.31703 -11.12901 -11.01036 -10.80501 -10.23693 -9.48617 -9.04476 -8.33680 -6.40824 0.17141 0.45839 1.35831 1.37760 1.39521 1.42220 1.51953 1.72933 2.30489 2.34567 2.47775 2.77971 3.01470 3.27367 3.32016 3.64288 3.86907 4.00360 4.05534 4.14376 4.18893 4.24022 4.25350 4.38741 4.48691 4.52770 4.65325 4.73325 4.83670 4.98001 5.04563 5.10583 5.21424 5.22182 5.32307 5.37647 5.49745 5.53967 5.65551 5.85292 5.89967 6.16966 6.33274 6.47944 6.65400 6.98175 7.12620 7.24404 8.82013 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.002035 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.872926 B =13758.065198 C =14431.128809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.538 4.538 8 H 0.040 0.960 9 C -0.006 4.006 10 C 0.086 3.914 11 O -0.328 6.328 12 C 0.131 3.869 13 C -0.233 4.233 14 C -0.066 4.066 15 C -0.171 4.171 16 C 0.179 3.821 17 N -0.647 5.647 18 C 0.505 3.495 19 O -0.551 6.551 20 C 0.123 3.877 21 H 0.158 0.842 22 C -0.115 4.115 23 C -0.145 4.145 24 C 0.510 3.490 25 O -0.587 6.587 26 N -0.713 5.713 27 C -0.178 4.178 28 H 0.270 0.730 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.435 0.565 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.411 0.589 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.818 -8.422 -1.610 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.576 4.576 8 H 0.058 0.942 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.242 6.242 12 C 0.085 3.915 13 C -0.252 4.252 14 C -0.084 4.084 15 C -0.192 4.192 16 C 0.084 3.916 17 N -0.294 5.294 18 C 0.292 3.708 19 O -0.428 6.428 20 C 0.014 3.986 21 H 0.175 0.825 22 C -0.153 4.153 23 C -0.185 4.185 24 C 0.299 3.701 25 O -0.468 6.468 26 N -0.367 5.367 27 C -0.199 4.199 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.275 0.725 37 H 0.167 0.833 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.250 0.750 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 29.688 -9.127 -0.916 31.073 hybrid contribution -1.012 0.079 -0.314 1.062 sum 28.676 -9.048 -1.230 30.095 Atomic orbital electron populations 1.70031 1.08212 1.28506 1.51576 1.25926 0.95645 1.03486 0.93663 0.85646 0.79475 0.78056 0.79451 1.18845 1.20734 1.17063 1.21132 0.90697 0.93809 1.51945 0.94179 1.19442 0.94176 0.92695 0.98019 1.22687 0.75822 0.99586 1.00748 1.86019 1.22724 1.27321 1.88137 1.19083 0.92690 0.84499 0.95269 1.21486 1.00788 0.92840 1.10118 1.21036 0.94444 0.97218 0.95738 1.21199 0.93688 0.98451 1.05826 1.17265 0.83557 0.92366 0.98364 1.43250 1.03823 1.31320 1.51040 1.21517 0.91561 0.80769 0.76936 1.90778 1.67540 1.38040 1.46396 1.21903 0.88305 0.84291 1.04098 0.82453 1.22774 0.96854 0.99727 0.95956 1.22430 1.01576 0.89390 1.05118 1.21679 0.78088 0.92985 0.77371 1.90752 1.54782 1.44340 1.56885 1.46149 1.39506 1.09083 1.41976 1.20163 0.91263 0.97923 1.10509 0.92150 0.95262 0.95176 0.92262 0.92581 0.85612 0.83927 0.84787 0.72480 0.83310 0.90632 0.87275 0.84188 0.74982 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.95 42.92 27.47 68.60 1.88 44.80 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.54 -30.24 9.66 25.60 0.25 -29.99 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 10 C 0.09 3.40 4.68 71.98 0.34 3.74 16 11 O -0.33 -11.68 10.13 -92.40 -0.94 -12.61 16 12 C 0.13 3.94 6.68 22.49 0.15 4.09 16 13 C -0.23 -6.76 9.04 22.39 0.20 -6.55 16 14 C -0.07 -1.64 10.03 22.24 0.22 -1.42 16 15 C -0.17 -4.07 8.69 22.41 0.19 -3.88 16 16 C 0.18 3.62 6.30 38.14 0.24 3.86 16 17 N -0.65 -6.98 5.34 -303.55 -1.62 -8.60 16 18 C 0.50 6.54 6.86 87.65 0.60 7.14 16 19 O -0.55 -12.83 14.01 -3.06 -0.04 -12.87 16 20 C 0.12 0.61 3.93 44.69 0.18 0.79 16 21 H 0.16 -0.58 8.14 -2.38 -0.02 -0.60 16 22 C -0.12 -0.21 6.67 31.65 0.21 0.00 16 23 C -0.15 -0.78 6.86 30.59 0.21 -0.57 16 24 C 0.51 8.19 8.43 87.90 0.74 8.93 16 25 O -0.59 -15.81 18.03 -3.05 -0.05 -15.87 16 26 N -0.71 -8.71 5.47 -442.96 -2.42 -11.13 16 27 C -0.18 -4.08 9.90 22.48 0.22 -3.86 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 30 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 31 H 0.06 2.28 7.65 -2.39 -0.02 2.26 16 32 H 0.06 2.20 7.67 -2.38 -0.02 2.18 16 33 H 0.13 3.75 6.29 -2.91 -0.02 3.73 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.13 3.24 6.22 -2.91 -0.02 3.22 16 36 H 0.43 0.81 8.82 -92.71 -0.82 0.00 16 37 H 0.15 -0.94 8.14 -2.38 -0.02 -0.96 16 38 H 0.07 0.45 7.90 -2.39 -0.02 0.43 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.41 5.64 8.96 -92.71 -0.83 4.81 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -82.52 356.04 0.83 -81.69 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -0.63 Total: 8.76 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 4.35 Total: -16.78 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -3.74 Total: -77.12 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.03 Total: -41.36 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -82.52 0.83 -81.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122907227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds