Wall clock time and date at job start Tue Mar 31 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48506 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46941 * 299.99505 * 3 2 1 6 6 H 1.48498 * 109.46960 * 59.99861 * 3 2 1 7 7 C 1.37878 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47040 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47105 * 179.97438 * 10 9 7 12 12 C 1.35906 * 117.00234 * 179.97438 * 11 10 9 13 13 C 1.38818 * 120.01166 * 359.72601 * 12 11 10 14 14 C 1.38189 * 120.08884 * 179.76238 * 13 12 11 15 15 C 1.38148 * 120.12962 * 0.51378 * 14 13 12 16 16 C 1.38948 * 120.03635 * 359.74219 * 15 14 13 17 17 N 1.39720 * 120.04468 * 179.97438 * 16 15 14 18 18 C 1.34784 * 119.99710 * 213.37647 * 17 16 15 19 19 O 1.21377 * 119.99859 * 5.28345 * 18 17 16 20 20 C 1.49350 * 120.00038 * 185.27716 * 18 17 16 21 21 O 1.21356 * 119.99664 * 0.02562 * 20 18 17 22 22 N 1.34770 * 120.00001 * 180.02562 * 20 18 17 23 23 C 1.46502 * 120.00153 * 179.97438 * 22 20 18 24 24 C 1.52997 * 117.50041 * 223.62355 * 23 22 20 25 25 C 1.53003 * 117.49755 * 154.99796 * 23 22 20 26 26 C 1.38561 * 120.01610 * 180.02562 * 12 11 10 27 27 H 0.97000 * 119.99594 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46798 * 60.00111 * 9 7 2 29 29 H 1.08997 * 109.47152 * 299.99609 * 9 7 2 30 30 H 1.09001 * 109.47382 * 59.99988 * 10 9 7 31 31 H 1.09006 * 109.47093 * 300.00097 * 10 9 7 32 32 H 1.07998 * 119.95582 * 0.02695 * 13 12 11 33 33 H 1.07995 * 119.93232 * 180.25374 * 14 13 12 34 34 H 1.08001 * 119.98078 * 179.71565 * 15 14 13 35 35 H 0.96996 * 120.00377 * 33.37601 * 17 16 15 36 36 H 0.96997 * 120.00131 * 0.02562 * 22 20 18 37 37 H 1.09005 * 115.54762 * 9.33333 * 23 22 20 38 38 H 1.08997 * 117.50175 * 359.97438 * 24 23 22 39 39 H 1.09001 * 117.49925 * 145.02589 * 24 23 22 40 40 H 1.09006 * 117.49503 * 214.98187 * 25 23 22 41 41 H 1.08999 * 117.49931 * 359.97438 * 25 23 22 42 42 H 1.08000 * 120.06959 * 359.95517 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 0.0011 12 6 2.2707 -6.0395 0.0007 13 6 3.6570 -5.9672 -0.0061 14 6 4.4111 -7.1252 -0.0016 15 6 3.7883 -8.3583 -0.0011 16 6 2.4011 -8.4369 0.0003 17 7 1.7710 -9.6839 0.0003 18 6 0.5964 -9.8455 -0.6408 19 8 0.1335 -8.9358 -1.2976 20 6 -0.1353 -11.1437 -0.5429 21 8 0.3275 -12.0530 0.1141 22 7 -1.3095 -11.3054 -1.1843 23 6 -2.0271 -12.5791 -1.0888 24 6 -2.6278 -13.1497 -2.3750 25 6 -3.5419 -12.5542 -1.3022 26 6 1.6419 -7.2742 0.0007 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1468 -5.0047 -0.0105 33 1 5.4895 -7.0660 -0.0027 34 1 4.3801 -9.2618 -0.0022 35 1 2.1789 -10.4334 0.4615 36 1 -1.6792 -10.5788 -1.7098 37 1 -1.6331 -13.2871 -0.3597 38 1 -2.4896 -12.5773 -3.2922 39 1 -2.6291 -14.2334 -2.4924 40 1 -4.1445 -13.2462 -0.7137 41 1 -4.0047 -11.5902 -1.5132 42 1 0.5635 -7.3323 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124515277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:21 Heat of formation + Delta-G solvation = -54.590993 kcal Electronic energy + Delta-G solvation = -24859.363813 eV Core-core repulsion = 20998.817844 eV Total energy + Delta-G solvation = -3860.545969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32203 -39.96562 -39.01305 -37.58777 -37.27748 -34.87505 -33.37406 -33.19808 -30.93290 -29.84003 -29.13183 -25.99087 -24.99280 -23.17413 -22.91758 -22.26519 -21.82447 -21.01376 -20.28583 -19.17618 -18.11266 -17.43139 -16.45948 -16.41872 -16.19383 -15.96190 -15.48989 -15.34995 -15.24280 -15.00277 -14.57238 -14.47966 -14.18766 -13.50130 -13.27474 -13.09232 -12.79049 -12.33699 -12.14020 -12.12581 -11.97125 -11.81581 -11.71336 -11.42162 -11.08372 -10.96530 -10.80780 -10.57518 -10.43839 -9.91887 -9.85596 -9.65846 -9.39195 -9.28573 -8.46569 -8.37075 -7.89072 -6.10332 -4.14963 0.78844 1.48317 1.58638 1.87911 2.77307 3.11723 3.26564 3.33593 3.37155 3.38354 3.76016 3.90116 4.06475 4.20459 4.39241 4.41307 4.45395 4.93275 5.12309 5.12956 5.16554 5.26148 5.29453 5.36226 5.38646 5.55142 5.57606 5.71092 5.80947 5.99639 6.03001 6.10397 6.24603 6.45500 6.53927 6.59909 6.70236 6.85771 6.98525 7.34926 7.50485 7.59406 7.64408 7.80351 8.04458 8.23611 8.90884 9.49336 11.01292 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002197 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.404847 B =12744.108555 C =14159.345416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.064 3.936 11 O -0.312 6.312 12 C 0.165 3.835 13 C -0.220 4.220 14 C -0.060 4.060 15 C -0.189 4.189 16 C 0.171 3.829 17 N -0.640 5.640 18 C 0.504 3.496 19 O -0.488 6.488 20 C 0.518 3.482 21 O -0.516 6.516 22 N -0.672 5.672 23 C 0.072 3.928 24 C -0.189 4.189 25 C -0.184 4.184 26 C -0.162 4.162 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.422 0.578 36 H 0.417 0.583 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -27.062 -1.858 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.010 4.010 11 O -0.224 6.224 12 C 0.117 3.883 13 C -0.240 4.240 14 C -0.079 4.079 15 C -0.209 4.209 16 C 0.077 3.923 17 N -0.287 5.287 18 C 0.285 3.715 19 O -0.361 6.361 20 C 0.299 3.701 21 O -0.392 6.392 22 N -0.324 5.324 23 C -0.034 4.034 24 C -0.227 4.227 25 C -0.223 4.223 26 C -0.183 4.183 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.260 0.740 36 H 0.254 0.746 37 H 0.160 0.840 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.185 -26.924 -1.850 26.988 hybrid contribution 0.607 1.000 -0.084 1.172 sum 0.422 -25.924 -1.934 25.999 Atomic orbital electron populations 1.69990 1.06103 1.26855 1.49762 1.25002 0.94917 0.99418 0.94941 0.86426 0.79971 0.83246 0.77707 1.19630 1.20843 1.20853 1.21006 0.93084 0.90168 1.52124 0.92275 1.19137 0.94202 0.88994 0.98949 1.23374 0.97132 0.80671 0.99778 1.86196 1.36503 1.13127 1.86608 1.18915 0.89881 0.87270 0.92237 1.21443 0.93072 1.00086 1.09373 1.20688 0.99556 0.91104 0.96538 1.20649 0.91832 0.98543 1.09886 1.17249 0.91215 0.83488 1.00315 1.43035 1.21380 1.12040 1.52213 1.20131 0.82322 0.88492 0.80523 1.90872 1.65789 1.41837 1.37560 1.19921 0.82002 0.87931 0.80241 1.90770 1.66694 1.42060 1.39639 1.45111 1.20948 1.15992 1.50300 1.21743 0.92438 0.87680 1.01515 1.23473 1.03514 1.01815 0.93924 1.23435 0.92352 1.03669 1.02795 1.20239 1.01065 0.88656 1.08316 0.92758 0.95334 0.95358 0.92972 0.92961 0.84833 0.85412 0.85746 0.73962 0.74641 0.83964 0.88092 0.87586 0.87429 0.87950 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.06 1.39 4.68 37.16 0.17 1.56 16 11 O -0.31 -6.57 10.13 -19.45 -0.20 -6.77 16 12 C 0.17 2.95 6.68 -39.25 -0.26 2.69 16 13 C -0.22 -3.37 9.04 -39.38 -0.36 -3.72 16 14 C -0.06 -0.74 10.03 -39.63 -0.40 -1.14 16 15 C -0.19 -2.20 9.96 -39.35 -0.39 -2.59 16 16 C 0.17 2.29 6.27 -83.77 -0.53 1.76 16 17 N -0.64 -7.09 5.32 -10.31 -0.05 -7.15 16 18 C 0.50 6.03 7.62 -11.63 -0.09 5.94 16 19 O -0.49 -7.15 14.16 5.47 0.08 -7.07 16 20 C 0.52 5.40 7.89 -11.63 -0.09 5.31 16 21 O -0.52 -6.08 16.05 5.49 0.09 -6.00 16 22 N -0.67 -5.58 5.56 -54.27 -0.30 -5.88 16 23 C 0.07 0.48 6.43 -67.93 -0.44 0.04 16 24 C -0.19 -0.94 10.46 -26.73 -0.28 -1.22 16 25 C -0.18 -0.90 10.46 -26.73 -0.28 -1.18 16 26 C -0.16 -2.67 8.59 -39.23 -0.34 -3.01 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 31 H 0.05 1.06 7.65 -51.93 -0.40 0.67 16 32 H 0.13 1.98 6.29 -52.49 -0.33 1.64 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.42 3.62 8.30 -40.82 -0.34 3.28 16 36 H 0.42 3.13 8.30 -40.82 -0.34 2.79 16 37 H 0.14 1.02 7.40 -51.93 -0.38 0.63 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.14 2.44 6.42 -52.49 -0.34 2.10 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.99 366.42 -8.43 -41.42 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.45 Total: 3.94 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -3.83 Total: -8.46 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.38 Total: -38.86 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.03 Total: -19.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.99 -8.43 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124515277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.166 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds