Wall clock time and date at job start Tue Mar 31 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00154 * 2 1 4 4 H 1.48506 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46941 * 299.99505 * 3 2 1 6 6 H 1.48498 * 109.46960 * 59.99861 * 3 2 1 7 7 C 1.37878 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47040 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47105 * 179.97438 * 10 9 7 12 12 C 1.35906 * 117.00234 * 179.97438 * 11 10 9 13 13 C 1.38818 * 120.01166 * 359.72601 * 12 11 10 14 14 C 1.38189 * 120.08884 * 179.76238 * 13 12 11 15 15 C 1.38148 * 120.12962 * 0.51378 * 14 13 12 16 16 C 1.38948 * 120.03635 * 359.74219 * 15 14 13 17 17 N 1.39720 * 120.04468 * 179.97438 * 16 15 14 18 18 C 1.34784 * 119.99710 * 213.37647 * 17 16 15 19 19 O 1.21377 * 119.99859 * 5.28345 * 18 17 16 20 20 C 1.49350 * 120.00038 * 185.27716 * 18 17 16 21 21 O 1.21356 * 119.99664 * 0.02562 * 20 18 17 22 22 N 1.34770 * 120.00001 * 180.02562 * 20 18 17 23 23 C 1.46502 * 120.00153 * 179.97438 * 22 20 18 24 24 C 1.52997 * 117.50041 * 223.62355 * 23 22 20 25 25 C 1.53003 * 117.49755 * 154.99796 * 23 22 20 26 26 C 1.38561 * 120.01610 * 180.02562 * 12 11 10 27 27 H 0.97000 * 119.99594 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46798 * 60.00111 * 9 7 2 29 29 H 1.08997 * 109.47152 * 299.99609 * 9 7 2 30 30 H 1.09001 * 109.47382 * 59.99988 * 10 9 7 31 31 H 1.09006 * 109.47093 * 300.00097 * 10 9 7 32 32 H 1.07998 * 119.95582 * 0.02695 * 13 12 11 33 33 H 1.07995 * 119.93232 * 180.25374 * 14 13 12 34 34 H 1.08001 * 119.98078 * 179.71565 * 15 14 13 35 35 H 0.96996 * 120.00377 * 33.37601 * 17 16 15 36 36 H 0.96997 * 120.00131 * 0.02562 * 22 20 18 37 37 H 1.09005 * 115.54762 * 9.33333 * 23 22 20 38 38 H 1.08997 * 117.50175 * 359.97438 * 24 23 22 39 39 H 1.09001 * 117.49925 * 145.02589 * 24 23 22 40 40 H 1.09006 * 117.49503 * 214.98187 * 25 23 22 41 41 H 1.08999 * 117.49931 * 359.97438 * 25 23 22 42 42 H 1.08000 * 120.06959 * 359.95517 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 0.0011 12 6 2.2707 -6.0395 0.0007 13 6 3.6570 -5.9672 -0.0061 14 6 4.4111 -7.1252 -0.0016 15 6 3.7883 -8.3583 -0.0011 16 6 2.4011 -8.4369 0.0003 17 7 1.7710 -9.6839 0.0003 18 6 0.5964 -9.8455 -0.6408 19 8 0.1335 -8.9358 -1.2976 20 6 -0.1353 -11.1437 -0.5429 21 8 0.3275 -12.0530 0.1141 22 7 -1.3095 -11.3054 -1.1843 23 6 -2.0271 -12.5791 -1.0888 24 6 -2.6278 -13.1497 -2.3750 25 6 -3.5419 -12.5542 -1.3022 26 6 1.6419 -7.2742 0.0007 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1468 -5.0047 -0.0105 33 1 5.4895 -7.0660 -0.0027 34 1 4.3801 -9.2618 -0.0022 35 1 2.1789 -10.4334 0.4615 36 1 -1.6792 -10.5788 -1.7098 37 1 -1.6331 -13.2871 -0.3597 38 1 -2.4896 -12.5773 -3.2922 39 1 -2.6291 -14.2334 -2.4924 40 1 -4.1445 -13.2462 -0.7137 41 1 -4.0047 -11.5902 -1.5132 42 1 0.5635 -7.3323 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124515277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:20 Heat of formation + Delta-G solvation = -77.457366 kcal Electronic energy + Delta-G solvation = -24860.355373 eV Core-core repulsion = 20998.817844 eV Total energy + Delta-G solvation = -3861.537529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27569 -41.06353 -40.07978 -38.52248 -38.20925 -35.96815 -35.40042 -33.91685 -32.61784 -31.18797 -30.41454 -27.15963 -26.67895 -24.25854 -23.61829 -23.31073 -22.84234 -22.10983 -21.46823 -20.18090 -19.33132 -18.43786 -18.16972 -17.40621 -17.12117 -17.01926 -16.93321 -16.76286 -16.64182 -16.17652 -15.51333 -15.42293 -15.22721 -14.55285 -14.48590 -14.33315 -14.29912 -13.81013 -13.42664 -13.28449 -12.96955 -12.79487 -12.69061 -12.65004 -12.52634 -12.43028 -12.18140 -11.83549 -11.59008 -11.52837 -11.39428 -11.33302 -10.87480 -10.63536 -10.00532 -9.52730 -9.09504 -8.27009 -6.40870 -0.19345 0.42821 0.48760 1.03213 1.41084 1.42334 1.55861 1.88479 2.16629 2.37786 2.56458 2.76573 2.91211 3.07500 3.17802 3.70385 3.87038 3.97814 4.01435 4.12134 4.16262 4.20606 4.27466 4.38568 4.49456 4.58295 4.61840 4.73819 4.75505 4.99844 5.10253 5.15196 5.18279 5.20541 5.30154 5.36262 5.45626 5.47003 5.65821 5.73568 5.84515 6.06177 6.14257 6.52878 6.54377 6.72318 6.74439 7.29373 8.86545 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002197 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.404847 B =12744.108555 C =14159.345416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.343 6.343 12 C 0.127 3.873 13 C -0.227 4.227 14 C -0.050 4.050 15 C -0.168 4.168 16 C 0.170 3.830 17 N -0.628 5.628 18 C 0.504 3.496 19 O -0.520 6.520 20 C 0.523 3.477 21 O -0.531 6.531 22 N -0.663 5.663 23 C 0.047 3.953 24 C -0.178 4.178 25 C -0.174 4.174 26 C -0.182 4.182 27 H 0.266 0.734 28 H -0.004 1.004 29 H -0.003 1.003 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.437 0.563 36 H 0.419 0.581 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -28.597 -1.997 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.257 6.257 12 C 0.080 3.920 13 C -0.246 4.246 14 C -0.068 4.068 15 C -0.188 4.188 16 C 0.076 3.924 17 N -0.276 5.276 18 C 0.286 3.714 19 O -0.395 6.395 20 C 0.303 3.697 21 O -0.408 6.408 22 N -0.313 5.313 23 C -0.058 4.058 24 C -0.216 4.216 25 C -0.212 4.212 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.277 0.723 36 H 0.257 0.743 37 H 0.156 0.844 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.121 0.879 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.323 -28.515 -1.987 28.679 hybrid contribution -0.222 1.290 -0.056 1.310 sum 2.101 -27.225 -2.043 27.383 Atomic orbital electron populations 1.70140 1.08144 1.28161 1.50743 1.26093 0.95848 1.03855 0.94196 0.85198 0.79118 0.77693 0.77804 1.17880 1.20327 1.20285 1.21432 0.93928 0.90829 1.51919 0.90799 1.18985 0.94633 0.91603 0.95867 1.22920 0.95394 0.79841 1.00881 1.86098 1.37722 1.13871 1.88053 1.19189 0.91193 0.86240 0.95337 1.21602 0.91882 1.01667 1.09474 1.21159 1.01373 0.89962 0.94334 1.21150 0.90953 1.00119 1.06580 1.17375 0.92098 0.83224 0.99710 1.42978 1.21107 1.11708 1.51832 1.20487 0.82316 0.88720 0.79871 1.90866 1.66546 1.43029 1.39063 1.19591 0.82485 0.86998 0.80594 1.90762 1.67273 1.42150 1.40663 1.45164 1.20183 1.16766 1.49236 1.21929 0.93651 0.87055 1.03118 1.23548 1.02189 1.02663 0.93185 1.23524 0.91137 1.04050 1.02510 1.20213 1.00408 0.89667 1.09972 0.92473 0.98607 0.98446 0.91609 0.91849 0.84580 0.81335 0.81456 0.72253 0.74306 0.84441 0.88010 0.86145 0.86001 0.87868 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 9 C 0.03 1.47 5.34 29.85 0.16 1.63 16 10 C 0.08 3.73 4.68 71.98 0.34 4.07 16 11 O -0.34 -15.36 10.13 -92.50 -0.94 -16.30 16 12 C 0.13 4.66 6.68 22.49 0.15 4.81 16 13 C -0.23 -6.66 9.04 22.40 0.20 -6.46 16 14 C -0.05 -1.05 10.03 22.24 0.22 -0.82 16 15 C -0.17 -3.29 9.96 22.42 0.22 -3.07 16 16 C 0.17 4.35 6.27 38.20 0.24 4.59 16 17 N -0.63 -13.25 5.32 -304.87 -1.62 -14.88 16 18 C 0.50 12.11 7.62 87.24 0.66 12.78 16 19 O -0.52 -15.90 14.16 -3.33 -0.05 -15.95 16 20 C 0.52 10.80 7.89 87.24 0.69 11.49 16 21 O -0.53 -12.17 16.05 -3.26 -0.05 -12.22 16 22 N -0.66 -10.89 5.56 -443.97 -2.47 -13.36 16 23 C 0.05 0.59 6.43 44.99 0.29 0.88 16 24 C -0.18 -1.49 10.46 30.60 0.32 -1.17 16 25 C -0.17 -1.47 10.46 30.60 0.32 -1.15 16 26 C -0.18 -6.20 8.59 22.50 0.19 -6.00 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 30 H 0.07 2.70 7.67 -2.39 -0.02 2.68 16 31 H 0.06 2.63 7.65 -2.38 -0.02 2.61 16 32 H 0.14 3.85 6.29 -2.91 -0.02 3.83 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.44 6.60 8.30 -92.71 -0.77 5.83 16 36 H 0.42 6.40 8.30 -92.71 -0.77 5.63 16 37 H 0.14 1.88 7.40 -2.38 -0.02 1.86 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.12 4.42 6.42 -2.91 -0.02 4.40 16 Total: -1.00 -75.21 366.42 1.42 -73.79 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.47 Total: 19.12 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.71 Total: -8.72 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.81 Total: -85.48 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.04 Total: -44.47 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.21 1.42 -73.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124515277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.672 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds