Wall clock time and date at job start Tue Mar 31 2020 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 117.00063 * 2 1 4 4 C 1.38755 * 120.05737 * 359.95939 * 3 2 1 5 5 C 1.38119 * 119.94732 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05454 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94855 * 179.97438 * 6 5 4 8 8 C 1.38245 * 120.11203 * 359.97438 * 6 5 4 9 9 C 1.38165 * 120.05717 * 0.02562 * 8 6 5 10 10 C 1.50701 * 120.03340 * 179.70111 * 9 8 6 11 11 C 1.52994 * 110.53458 * 240.70319 * 10 9 8 12 12 N 1.47315 * 110.59465 * 3.53196 * 10 9 8 13 13 C 1.34528 * 106.61607 * 118.52677 * 12 10 9 14 14 O 1.21539 * 123.76429 * 180.02562 * 13 12 10 15 15 N 1.33783 * 112.45955 * 359.97438 * 13 12 10 16 16 C 1.46503 * 124.17548 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47424 * 89.97776 * 16 15 13 18 18 H 1.07998 * 119.99604 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00250 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99756 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47305 * 59.99843 * 21 19 17 23 23 H 1.48497 * 109.47121 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46888 * 299.99624 * 21 19 17 25 25 C 1.35118 * 111.69280 * 0.09058 * 15 13 12 26 26 O 1.21227 * 127.34110 * 179.97438 * 25 15 13 27 27 H 1.09007 * 109.46892 * 300.00164 * 1 2 3 28 28 H 1.08998 * 109.46929 * 59.99815 * 1 2 3 29 29 H 1.08994 * 109.47479 * 180.02562 * 1 2 3 30 30 H 1.08010 * 120.02449 * 0.03647 * 4 3 2 31 31 H 1.08000 * 119.97324 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.46768 * 270.02292 * 7 6 5 33 33 H 1.09006 * 109.46713 * 30.01645 * 7 6 5 34 34 H 1.08992 * 109.47216 * 150.02036 * 7 6 5 35 35 H 1.07997 * 119.97370 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47558 * 59.99970 * 11 10 9 37 37 H 1.09003 * 109.47040 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47453 * 299.99493 * 11 10 9 39 39 H 0.96995 * 126.68643 * 298.55997 * 12 10 9 40 40 H 1.09008 * 109.47065 * 209.97524 * 16 15 13 41 41 H 1.08996 * 109.47431 * 329.97535 * 16 15 13 42 42 H 0.96999 * 119.99493 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9209 3.6048 -0.0014 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0028 8 6 4.0560 2.5171 -0.0008 9 6 3.4312 1.2848 -0.0002 10 6 4.2537 0.0221 -0.0061 11 6 3.9537 -0.8080 -1.2558 12 7 5.6902 0.3390 0.0731 13 6 6.1452 -0.2192 1.2094 14 8 7.2998 -0.1472 1.5822 15 7 5.1846 -0.8614 1.8836 16 6 5.3969 -1.5597 3.1539 17 6 5.1680 -0.6044 4.2967 18 1 4.8923 0.4205 4.0968 19 6 5.3114 -1.0385 5.5975 20 7 5.6476 -2.2865 5.8409 21 14 5.0269 0.1455 7.0140 22 1 3.6343 0.6583 6.9585 23 1 5.2422 -0.5622 8.3016 24 1 5.9774 1.2816 6.9080 25 6 3.9943 -0.7883 1.2484 26 8 2.9396 -1.2676 1.6055 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2128 2.3204 -0.0009 31 1 1.3340 4.5114 -0.0025 32 1 4.1507 5.3416 -1.0308 33 1 3.3584 5.7467 0.5108 34 1 4.9443 4.9385 0.5107 35 1 5.1344 2.5752 -0.0014 36 1 4.1936 -0.2255 -2.1452 37 1 4.5572 -1.7156 -1.2426 38 1 2.8968 -1.0743 -1.2700 39 1 6.2070 0.8507 -0.5687 40 1 4.6986 -2.3931 3.2316 41 1 6.4187 -1.9369 3.1949 42 1 5.7482 -2.5919 6.7560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128609338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:09 Heat of formation + Delta-G solvation = -50.348769 kcal Electronic energy + Delta-G solvation = -27920.017550 eV Core-core repulsion = 24059.655538 eV Total energy + Delta-G solvation = -3860.362012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94820 -40.04760 -37.74872 -37.64973 -35.86280 -34.63002 -32.71044 -32.02949 -31.14940 -29.61001 -27.90585 -27.67988 -25.93967 -24.66826 -23.32980 -22.69522 -21.56622 -20.54609 -19.54624 -18.13176 -17.26530 -16.79822 -16.31685 -16.09384 -15.71376 -15.38730 -14.99652 -14.75870 -14.63044 -14.30611 -13.99395 -13.82512 -13.79404 -13.67715 -13.31943 -12.98301 -12.36263 -12.30332 -12.24763 -12.14707 -12.10595 -11.80600 -11.49435 -11.46916 -11.10699 -10.83708 -10.82058 -10.70174 -10.37866 -9.98579 -9.82723 -9.50677 -9.17240 -8.84341 -8.47774 -8.46437 -7.97970 -6.09415 -4.13883 1.19857 1.38230 2.36995 3.01859 3.33110 3.33821 3.36075 3.40175 3.54864 3.81203 3.87166 4.40232 4.42948 4.56854 4.77040 4.83731 4.99673 5.06227 5.17343 5.21117 5.26413 5.28491 5.34280 5.53162 5.54283 5.59779 5.63875 5.73050 5.85516 5.93798 5.98516 6.11465 6.25078 6.30538 6.54255 6.70008 6.74327 7.10788 7.22663 7.27650 7.41896 7.84286 8.04989 8.08944 8.22814 8.79352 8.94299 9.50466 11.00037 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.004994 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.177308 B = 5605.028918 C = 5728.991628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.149 3.851 4 C -0.208 4.208 5 C -0.075 4.075 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.061 4.061 9 C -0.119 4.119 10 C 0.171 3.829 11 C -0.140 4.140 12 N -0.734 5.734 13 C 0.703 3.297 14 O -0.542 6.542 15 N -0.559 5.559 16 C 0.250 3.750 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.892 5.892 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.275 1.275 25 C 0.531 3.469 26 O -0.448 6.448 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.429 0.571 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 9.830 -17.425 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.200 6.200 3 C 0.103 3.897 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.129 4.129 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.121 4.121 10 C 0.079 3.921 11 C -0.198 4.198 12 N -0.400 5.400 13 C 0.404 3.596 14 O -0.416 6.416 15 N -0.304 5.304 16 C 0.133 3.867 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.530 5.530 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.200 1.200 25 C 0.316 3.684 26 O -0.316 6.316 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.273 0.727 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.926 9.150 -16.710 21.039 hybrid contribution -0.192 1.056 0.651 1.255 sum -9.119 10.206 -16.059 21.101 Atomic orbital electron populations 1.23038 0.78875 1.04033 1.00730 1.86308 1.20835 1.25359 1.87503 1.18720 0.91161 0.85056 0.94808 1.21165 0.99996 0.92073 1.09414 1.20823 0.93890 0.96986 0.97628 1.19744 0.93593 0.95356 1.04187 1.20701 1.00511 0.93280 1.01937 1.20695 1.00074 0.90152 0.97043 1.18838 0.90397 0.93939 1.08958 1.19973 0.81432 0.93256 0.97429 1.21951 1.04273 0.99243 0.94314 1.45678 1.09218 1.59545 1.25525 1.15944 0.85037 0.78455 0.80154 1.90952 1.16339 1.63438 1.70867 1.46902 1.09218 1.49648 1.24584 1.19566 0.99279 0.92354 0.75533 1.21220 1.48332 0.96923 0.90526 0.92349 1.24879 0.94681 0.95447 0.98697 1.69916 1.47048 1.15183 1.20855 0.86485 0.78843 0.80861 0.80882 1.20104 1.20944 1.20012 1.20393 0.84134 0.79738 0.84174 1.90726 1.25997 1.45608 1.69295 0.92740 0.93149 0.88177 0.85208 0.85862 0.91527 0.91755 0.91509 0.85117 0.91160 0.91395 0.89141 0.72730 0.93070 0.92871 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.29 -4.16 6.01 -40.66 -0.24 -4.40 16 3 C 0.15 2.15 6.31 -39.21 -0.25 1.90 16 4 C -0.21 -2.50 9.04 -39.43 -0.36 -2.85 16 5 C -0.08 -0.84 9.69 -39.61 -0.38 -1.23 16 6 C -0.13 -1.52 5.88 -104.60 -0.62 -2.14 16 7 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 8 C -0.06 -0.83 9.03 -39.61 -0.36 -1.18 16 9 C -0.12 -1.79 4.83 -104.47 -0.50 -2.30 16 10 C 0.17 2.72 1.02 -133.24 -0.14 2.58 16 11 C -0.14 -1.77 8.77 37.15 0.33 -1.44 16 12 N -0.73 -11.53 4.65 -54.02 -0.25 -11.78 16 13 C 0.70 15.09 8.62 -88.03 -0.76 14.33 16 14 O -0.54 -13.41 17.48 5.33 0.09 -13.32 16 15 N -0.56 -13.10 2.60 -121.92 -0.32 -13.42 16 16 C 0.25 6.88 5.46 -5.19 -0.03 6.85 16 17 C -0.53 -15.72 9.39 -34.44 -0.32 -16.05 16 18 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.53 11.21 6.78 -10.39 -0.07 11.14 16 26 O -0.45 -10.33 15.64 -15.63 -0.24 -10.57 16 27 H 0.05 0.54 7.66 -51.92 -0.40 0.15 16 28 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.13 1.62 6.65 -52.49 -0.35 1.28 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.17 6.28 -51.93 -0.33 0.84 16 39 H 0.43 5.16 8.45 -40.82 -0.34 4.82 16 40 H 0.05 1.46 8.01 -51.92 -0.42 1.05 16 41 H 0.05 1.54 7.86 -51.93 -0.41 1.14 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -35.41 352.42 -7.61 -43.02 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.47 Total: 1.71 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -2.20 Total: 12.10 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.17 Total: -51.26 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.40 Total: -28.29 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.41 -7.61 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128609338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.330 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds