Wall clock time and date at job start Tue Mar 31 2020 12:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 117.00063 * 2 1 4 4 C 1.38755 * 120.05737 * 359.95939 * 3 2 1 5 5 C 1.38119 * 119.94732 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05454 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94855 * 179.97438 * 6 5 4 8 8 C 1.38245 * 120.11203 * 359.97438 * 6 5 4 9 9 C 1.38165 * 120.05717 * 0.02562 * 8 6 5 10 10 C 1.50701 * 120.03340 * 179.70111 * 9 8 6 11 11 C 1.52994 * 110.53458 * 240.70319 * 10 9 8 12 12 N 1.47315 * 110.59465 * 3.53196 * 10 9 8 13 13 C 1.34528 * 106.61607 * 118.52677 * 12 10 9 14 14 O 1.21539 * 123.76429 * 180.02562 * 13 12 10 15 15 N 1.33783 * 112.45955 * 359.97438 * 13 12 10 16 16 C 1.46503 * 124.17548 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47424 * 89.97776 * 16 15 13 18 18 H 1.07998 * 119.99604 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00250 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99756 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47305 * 59.99843 * 21 19 17 23 23 H 1.48497 * 109.47121 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46888 * 299.99624 * 21 19 17 25 25 C 1.35118 * 111.69280 * 0.09058 * 15 13 12 26 26 O 1.21227 * 127.34110 * 179.97438 * 25 15 13 27 27 H 1.09007 * 109.46892 * 300.00164 * 1 2 3 28 28 H 1.08998 * 109.46929 * 59.99815 * 1 2 3 29 29 H 1.08994 * 109.47479 * 180.02562 * 1 2 3 30 30 H 1.08010 * 120.02449 * 0.03647 * 4 3 2 31 31 H 1.08000 * 119.97324 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.46768 * 270.02292 * 7 6 5 33 33 H 1.09006 * 109.46713 * 30.01645 * 7 6 5 34 34 H 1.08992 * 109.47216 * 150.02036 * 7 6 5 35 35 H 1.07997 * 119.97370 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.47558 * 59.99970 * 11 10 9 37 37 H 1.09003 * 109.47040 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47453 * 299.99493 * 11 10 9 39 39 H 0.96995 * 126.68643 * 298.55997 * 12 10 9 40 40 H 1.09008 * 109.47065 * 209.97524 * 16 15 13 41 41 H 1.08996 * 109.47431 * 329.97535 * 16 15 13 42 42 H 0.96999 * 119.99493 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9209 3.6048 -0.0014 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0028 8 6 4.0560 2.5171 -0.0008 9 6 3.4312 1.2848 -0.0002 10 6 4.2537 0.0221 -0.0061 11 6 3.9537 -0.8080 -1.2558 12 7 5.6902 0.3390 0.0731 13 6 6.1452 -0.2192 1.2094 14 8 7.2998 -0.1472 1.5822 15 7 5.1846 -0.8614 1.8836 16 6 5.3969 -1.5597 3.1539 17 6 5.1680 -0.6044 4.2967 18 1 4.8923 0.4205 4.0968 19 6 5.3114 -1.0385 5.5975 20 7 5.6476 -2.2865 5.8409 21 14 5.0269 0.1455 7.0140 22 1 3.6343 0.6583 6.9585 23 1 5.2422 -0.5622 8.3016 24 1 5.9774 1.2816 6.9080 25 6 3.9943 -0.7883 1.2484 26 8 2.9396 -1.2676 1.6055 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2128 2.3204 -0.0009 31 1 1.3340 4.5114 -0.0025 32 1 4.1507 5.3416 -1.0308 33 1 3.3584 5.7467 0.5108 34 1 4.9443 4.9385 0.5107 35 1 5.1344 2.5752 -0.0014 36 1 4.1936 -0.2255 -2.1452 37 1 4.5572 -1.7156 -1.2426 38 1 2.8968 -1.0743 -1.2700 39 1 6.2070 0.8507 -0.5687 40 1 4.6986 -2.3931 3.2316 41 1 6.4187 -1.9369 3.1949 42 1 5.7482 -2.5919 6.7560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128609338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:07 Heat of formation + Delta-G solvation = -73.263703 kcal Electronic energy + Delta-G solvation = -27921.011216 eV Core-core repulsion = 24059.655538 eV Total energy + Delta-G solvation = -3861.355678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.50985 -41.11366 -39.45983 -38.63955 -37.38226 -36.49992 -34.73913 -33.16147 -32.24729 -30.69272 -29.88000 -28.62766 -26.77391 -26.21833 -25.19806 -24.05471 -22.64769 -22.03094 -20.98316 -19.24048 -19.00074 -18.66709 -17.65896 -17.28058 -17.27146 -16.84702 -16.57222 -16.26451 -16.00646 -15.74492 -15.25729 -15.05603 -14.92644 -14.79874 -14.56782 -14.41838 -13.99307 -13.70837 -13.39469 -13.33410 -13.17121 -13.00507 -12.97449 -12.71718 -12.65586 -12.40989 -12.36344 -12.01510 -11.82162 -11.71675 -11.66394 -11.09053 -10.73192 -10.70624 -10.39664 -9.89025 -8.93733 -8.34363 -6.49191 0.19900 0.43794 0.73296 1.32141 1.37451 1.40164 1.47881 2.09259 2.21966 2.34526 2.44189 2.70263 2.97137 3.07413 3.35294 3.79215 3.91669 4.02157 4.18161 4.28531 4.39211 4.46108 4.46460 4.52137 4.64565 4.69456 4.70408 4.77149 4.81194 4.90604 4.95333 5.01858 5.04551 5.12300 5.17103 5.33936 5.36995 5.54834 5.64284 5.82760 5.85225 5.85839 6.30547 6.50111 6.50420 6.59927 7.14313 7.26736 8.75443 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.004994 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.177308 B = 5605.028918 C = 5728.991628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.314 6.314 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.074 4.074 9 C -0.146 4.146 10 C 0.187 3.813 11 C -0.134 4.134 12 N -0.701 5.701 13 C 0.701 3.299 14 O -0.583 6.583 15 N -0.576 5.576 16 C 0.266 3.734 17 C -0.556 4.556 18 H 0.049 0.951 19 C 0.016 3.984 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.269 1.269 25 C 0.519 3.481 26 O -0.475 6.475 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.450 0.550 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 12.574 -18.562 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.227 6.227 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.089 4.089 6 C -0.133 4.133 7 C -0.163 4.163 8 C -0.092 4.092 9 C -0.148 4.148 10 C 0.097 3.903 11 C -0.192 4.192 12 N -0.367 5.367 13 C 0.402 3.598 14 O -0.459 6.459 15 N -0.320 5.320 16 C 0.146 3.854 17 C -0.594 4.594 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.193 1.193 24 H -0.194 1.194 25 C 0.306 3.694 26 O -0.345 6.345 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.297 0.703 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.389 11.920 -17.926 23.903 hybrid contribution 0.169 0.201 0.968 1.003 sum -10.219 12.121 -16.959 23.216 Atomic orbital electron populations 1.23275 0.77099 1.05013 1.02016 1.86266 1.22863 1.25903 1.87658 1.18945 0.91203 0.85869 0.95426 1.21492 1.01214 0.91565 1.08425 1.21246 0.93931 0.97895 0.95837 1.20107 0.94161 0.95926 1.03120 1.20752 1.00192 0.92041 1.03290 1.20852 1.00506 0.90325 0.97518 1.18852 0.90874 0.93487 1.11597 1.19958 0.80993 0.93753 0.95638 1.21987 1.04272 0.99146 0.93750 1.45429 1.09455 1.58100 1.23723 1.16012 0.84127 0.78502 0.81185 1.90914 1.17769 1.65055 1.72211 1.46873 1.11043 1.50146 1.23969 1.18991 0.96899 0.91969 0.77539 1.21424 1.49368 0.96758 0.91825 0.93294 1.25834 0.93878 0.97354 1.01407 1.70021 1.47068 1.16859 1.21907 0.85420 0.79015 0.78598 0.77564 1.19313 1.19288 1.19352 1.21339 0.82938 0.79578 0.85513 1.90687 1.26623 1.46709 1.70447 0.92867 0.90291 0.87542 0.82844 0.82715 0.89628 0.90426 0.92076 0.84805 0.87639 0.91559 0.89155 0.70252 0.95300 0.95541 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.31 -8.83 6.01 -72.14 -0.43 -9.26 16 3 C 0.13 3.62 6.31 22.51 0.14 3.76 16 4 C -0.21 -4.44 9.04 22.37 0.20 -4.24 16 5 C -0.07 -1.35 9.69 22.25 0.22 -1.13 16 6 C -0.13 -2.78 5.88 -19.85 -0.12 -2.90 16 7 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 8 C -0.07 -1.86 9.03 22.25 0.20 -1.66 16 9 C -0.15 -4.22 4.83 -19.77 -0.10 -4.32 16 10 C 0.19 5.89 1.02 2.24 0.00 5.89 16 11 C -0.13 -3.21 8.77 71.98 0.63 -2.58 16 12 N -0.70 -21.70 4.65 -443.25 -2.06 -23.76 16 13 C 0.70 30.94 8.62 179.44 1.55 32.49 16 14 O -0.58 -29.84 17.48 -3.84 -0.07 -29.91 16 15 N -0.58 -28.22 2.60 -776.71 -2.02 -30.24 16 16 C 0.27 15.48 5.46 85.63 0.47 15.95 16 17 C -0.56 -34.10 9.39 25.60 0.24 -33.86 16 18 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 19 C 0.02 0.94 5.46 84.65 0.46 1.40 16 20 N -0.92 -56.61 13.29 21.45 0.28 -56.32 16 21 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.52 22.59 6.78 87.89 0.60 23.18 16 26 O -0.48 -22.74 15.64 17.43 0.27 -22.47 16 27 H 0.05 0.99 7.66 -2.38 -0.02 0.97 16 28 H 0.08 1.00 7.66 -2.39 -0.02 0.99 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 31 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.08 0.98 8.08 -2.38 -0.02 0.96 16 34 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.13 3.13 6.65 -2.91 -0.02 3.11 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.24 6.28 -2.39 -0.01 2.23 16 39 H 0.45 10.18 8.45 -92.71 -0.78 9.40 16 40 H 0.03 1.77 8.01 -2.38 -0.02 1.76 16 41 H 0.03 1.65 7.86 -2.39 -0.02 1.63 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -80.24 352.42 4.61 -75.64 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.28 Total: 15.48 kcal Atomic # 6 Polarization: 26.27 SS G_CDS: 6.32 Total: 32.59 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.79 Total: -110.32 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -0.23 Total: -61.64 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -80.24 4.61 -75.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128609338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.375 kcal (2) G-P(sol) polarization free energy of solvation -80.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds