Wall clock time and date at job start Tue Mar 31 2020 12:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46958 * 240.00379 * 3 2 1 5 5 H 1.48508 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47457 * 119.99732 * 3 2 1 7 7 C 1.37878 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99764 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00103 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99938 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.46894 * 111.00218 * 66.04358 * 14 13 11 16 16 C 1.50700 * 109.47213 * 56.93850 * 15 14 13 17 17 C 1.34513 * 125.79280 * 94.90497 * 16 15 14 18 18 C 1.41387 * 106.84229 * 180.02562 * 17 16 15 19 19 C 1.34508 * 106.83801 * 0.02562 * 18 17 16 20 20 O 1.34305 * 108.42511 * 359.73747 * 19 18 17 21 21 C 1.46901 * 110.99703 * 190.00122 * 14 13 11 22 22 C 1.50702 * 109.47163 * 164.44868 * 21 14 13 23 23 C 1.34518 * 125.79203 * 95.64295 * 22 21 14 24 24 C 1.41375 * 106.84024 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84680 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78781 * 275.34006 * 22 21 14 27 27 H 0.96997 * 120.00541 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47127 * 60.00255 * 9 7 2 29 29 H 1.09001 * 109.47469 * 299.99815 * 9 7 2 30 30 H 0.97001 * 119.99973 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47322 * 299.99898 * 13 11 10 32 32 H 1.08997 * 109.47715 * 60.00834 * 13 11 10 33 33 H 1.08998 * 109.47454 * 176.93377 * 15 14 13 34 34 H 1.08995 * 109.47151 * 296.93709 * 15 14 13 35 35 H 1.08002 * 126.58017 * 0.04540 * 17 16 15 36 36 H 1.07997 * 126.57945 * 179.97438 * 18 17 16 37 37 H 1.08004 * 125.78918 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.47043 * 284.44615 * 21 14 13 39 39 H 1.08994 * 109.47669 * 44.44864 * 21 14 13 40 40 H 1.08000 * 126.57427 * 0.03893 * 23 22 21 41 41 H 1.08005 * 126.57817 * 179.97438 * 24 23 22 42 42 H 1.07992 * 125.79585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0029 12 8 0.5614 -5.1050 0.0039 13 6 2.7331 -6.0287 0.0032 14 7 1.9986 -7.3010 0.0043 15 6 1.2527 -7.4793 -1.2486 16 6 2.2038 -7.4017 -2.4149 17 6 2.7882 -8.4487 -3.0245 18 6 3.5957 -7.9222 -4.0587 19 6 3.4569 -6.5849 -4.0189 20 8 2.6084 -6.2756 -3.0248 21 6 2.9051 -8.4320 0.2428 22 6 2.1007 -9.6507 0.6152 23 6 1.7033 -10.6194 -0.2294 24 6 0.9796 -11.5605 0.5381 25 6 0.9783 -11.1111 1.8060 26 8 1.6638 -9.9569 1.8477 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0010 31 1 3.3591 -5.9718 -0.8872 32 1 3.3603 -5.9704 0.8927 33 1 0.7621 -8.4526 -1.2441 34 1 0.5018 -6.6944 -1.3392 35 1 2.6642 -9.4916 -2.7724 36 1 4.2073 -8.4856 -4.7479 37 1 3.9421 -5.8796 -4.6775 38 1 3.4767 -8.6367 -0.6625 39 1 3.5881 -8.1852 1.0556 40 1 1.8998 -10.6686 -1.2902 41 1 0.5165 -12.4665 0.1760 42 1 0.5091 -11.5978 2.6482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139472046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:33 Heat of formation + Delta-G solvation = 10.173480 kcal Electronic energy + Delta-G solvation = -26528.447857 eV Core-core repulsion = 22670.710287 eV Total energy + Delta-G solvation = -3857.737570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76455 -42.52463 -39.18092 -37.07243 -34.11092 -33.14905 -32.95278 -32.31336 -31.19271 -30.40786 -28.13359 -26.55703 -26.40294 -23.34227 -22.14296 -21.95398 -21.62321 -20.74361 -20.21161 -19.58478 -17.80164 -17.16382 -16.83985 -16.67854 -16.45695 -15.69013 -15.38255 -15.10615 -14.82236 -14.75100 -14.33999 -14.09943 -13.91252 -13.22273 -13.13641 -12.94693 -12.80725 -12.74655 -12.56256 -12.52441 -12.18903 -11.92426 -11.63485 -11.56889 -11.19993 -10.97682 -10.82230 -10.29825 -10.00870 -9.96441 -9.38928 -9.15810 -8.74047 -8.69890 -8.50429 -8.40261 -7.82650 -6.14492 -4.21340 1.57903 1.70026 2.47618 2.52587 2.91131 3.01897 3.26124 3.30882 3.32318 3.41515 3.70635 4.26009 4.43200 4.56990 4.62718 4.82230 4.90953 4.96445 5.00610 5.07760 5.17518 5.21352 5.27144 5.42471 5.48112 5.59099 5.67193 5.70947 5.76095 5.86149 5.91420 6.00308 6.14226 6.37780 6.41559 6.71469 6.79112 7.09090 7.16286 7.34800 7.48163 7.55767 7.69374 7.99737 8.66169 8.81082 9.14844 9.45199 10.95693 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.003204 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.087773 B = 8737.517849 C =10013.474948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.253 3.747 10 N -0.712 5.712 11 C 0.505 3.495 12 O -0.540 6.540 13 C 0.030 3.970 14 N -0.499 5.499 15 C 0.118 3.882 16 C -0.040 4.040 17 C -0.210 4.210 18 C -0.219 4.219 19 C -0.038 4.038 20 O -0.164 6.164 21 C 0.120 3.880 22 C 0.010 3.990 23 C -0.211 4.211 24 C -0.216 4.216 25 C -0.040 4.040 26 O -0.166 6.166 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.389 0.611 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.200 0.800 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -21.985 -3.353 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.361 5.361 11 C 0.289 3.711 12 O -0.418 6.418 13 C -0.101 4.101 14 N -0.221 5.221 15 C -0.009 4.009 16 C -0.092 4.092 17 C -0.231 4.231 18 C -0.239 4.239 19 C -0.107 4.107 20 O -0.059 6.059 21 C -0.007 4.007 22 C -0.041 4.041 23 C -0.231 4.231 24 C -0.235 4.235 25 C -0.108 4.108 26 O -0.061 6.061 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.221 0.779 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.217 0.783 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.132 -21.475 -2.587 22.776 hybrid contribution 1.527 0.536 -1.055 1.932 sum 8.659 -20.939 -3.642 22.950 Atomic orbital electron populations 1.69959 1.06095 1.27382 1.48840 1.24943 0.94899 0.99395 0.94744 0.86489 0.79427 0.82401 0.78661 1.20110 1.21078 1.20065 1.21192 0.93200 0.90505 1.53259 0.92002 1.19073 0.88234 0.81799 0.97692 1.46398 1.11043 1.05991 1.72675 1.20083 0.89348 0.83985 0.77732 1.90617 1.16582 1.84459 1.50119 1.22159 0.95879 0.88904 1.03122 1.61962 1.26815 1.00366 1.32929 1.21283 0.93964 1.05870 0.79816 1.23754 1.02448 0.83777 0.99251 1.21657 1.02565 0.99498 0.99343 1.21794 1.05119 0.94441 1.02512 1.24140 0.96359 0.96956 0.93237 1.84219 1.49207 1.34361 1.38117 1.20631 0.92226 0.86142 1.01722 1.22152 1.01904 0.97789 0.82304 1.21586 1.04745 0.96287 1.00505 1.21783 1.05629 1.02476 0.93632 1.24031 0.99992 0.87108 0.99674 1.84059 1.54859 1.35727 1.31426 0.92405 0.95601 0.95529 0.77878 0.91490 0.87941 0.87661 0.86093 0.83811 0.83679 0.78303 0.90488 0.88702 0.83819 0.83633 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 10 N -0.71 -15.05 5.55 -61.47 -0.34 -15.39 16 11 C 0.50 10.10 7.57 -10.99 -0.08 10.02 16 12 O -0.54 -12.89 14.30 5.56 0.08 -12.81 16 13 C 0.03 0.44 5.18 -4.97 -0.03 0.41 16 14 N -0.50 -7.08 4.40 -238.97 -1.05 -8.13 16 15 C 0.12 1.70 5.41 -4.98 -0.03 1.67 16 16 C -0.04 -0.53 4.90 -35.63 -0.17 -0.71 16 17 C -0.21 -2.35 9.48 -39.70 -0.38 -2.73 16 18 C -0.22 -2.30 10.91 -39.70 -0.43 -2.73 16 19 C -0.04 -0.44 12.09 29.41 0.36 -0.08 16 20 O -0.16 -2.41 9.51 5.70 0.05 -2.36 16 21 C 0.12 1.34 5.40 -4.97 -0.03 1.31 16 22 C 0.01 0.11 6.25 -35.62 -0.22 -0.11 16 23 C -0.21 -2.21 9.75 -39.70 -0.39 -2.60 16 24 C -0.22 -2.08 10.91 -39.70 -0.43 -2.52 16 25 C -0.04 -0.39 12.09 29.42 0.36 -0.03 16 26 O -0.17 -2.09 10.65 5.69 0.06 -2.02 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 31 H 0.07 0.92 5.97 -51.93 -0.31 0.61 16 32 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 33 H 0.11 1.36 6.48 -51.93 -0.34 1.03 16 34 H 0.12 2.16 5.94 -51.93 -0.31 1.85 16 35 H 0.14 1.32 6.71 -52.49 -0.35 0.97 16 36 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.08 0.77 6.01 -51.93 -0.31 0.46 16 39 H 0.09 0.94 7.82 -51.93 -0.41 0.54 16 40 H 0.14 1.27 6.71 -52.49 -0.35 0.91 16 41 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -34.13 354.88 -7.25 -41.39 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.20 Total: 8.39 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.92 Total: -4.80 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.66 Total: -49.02 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.19 Total: -17.19 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.13 -7.25 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139472046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds