Wall clock time and date at job start Tue Mar 31 2020 12:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46958 * 240.00379 * 3 2 1 5 5 H 1.48508 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47457 * 119.99732 * 3 2 1 7 7 C 1.37878 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99764 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00103 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99938 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.46894 * 111.00218 * 66.04358 * 14 13 11 16 16 C 1.50700 * 109.47213 * 56.93850 * 15 14 13 17 17 C 1.34513 * 125.79280 * 94.90497 * 16 15 14 18 18 C 1.41387 * 106.84229 * 180.02562 * 17 16 15 19 19 C 1.34508 * 106.83801 * 0.02562 * 18 17 16 20 20 O 1.34305 * 108.42511 * 359.73747 * 19 18 17 21 21 C 1.46901 * 110.99703 * 190.00122 * 14 13 11 22 22 C 1.50702 * 109.47163 * 164.44868 * 21 14 13 23 23 C 1.34518 * 125.79203 * 95.64295 * 22 21 14 24 24 C 1.41375 * 106.84024 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84680 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78781 * 275.34006 * 22 21 14 27 27 H 0.96997 * 120.00541 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47127 * 60.00255 * 9 7 2 29 29 H 1.09001 * 109.47469 * 299.99815 * 9 7 2 30 30 H 0.97001 * 119.99973 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47322 * 299.99898 * 13 11 10 32 32 H 1.08997 * 109.47715 * 60.00834 * 13 11 10 33 33 H 1.08998 * 109.47454 * 176.93377 * 15 14 13 34 34 H 1.08995 * 109.47151 * 296.93709 * 15 14 13 35 35 H 1.08002 * 126.58017 * 0.04540 * 17 16 15 36 36 H 1.07997 * 126.57945 * 179.97438 * 18 17 16 37 37 H 1.08004 * 125.78918 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.47043 * 284.44615 * 21 14 13 39 39 H 1.08994 * 109.47669 * 44.44864 * 21 14 13 40 40 H 1.08000 * 126.57427 * 0.03893 * 23 22 21 41 41 H 1.08005 * 126.57817 * 179.97438 * 24 23 22 42 42 H 1.07992 * 125.79585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0029 12 8 0.5614 -5.1050 0.0039 13 6 2.7331 -6.0287 0.0032 14 7 1.9986 -7.3010 0.0043 15 6 1.2527 -7.4793 -1.2486 16 6 2.2038 -7.4017 -2.4149 17 6 2.7882 -8.4487 -3.0245 18 6 3.5957 -7.9222 -4.0587 19 6 3.4569 -6.5849 -4.0189 20 8 2.6084 -6.2756 -3.0248 21 6 2.9051 -8.4320 0.2428 22 6 2.1007 -9.6507 0.6152 23 6 1.7033 -10.6194 -0.2294 24 6 0.9796 -11.5605 0.5381 25 6 0.9783 -11.1111 1.8060 26 8 1.6638 -9.9569 1.8477 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0010 31 1 3.3591 -5.9718 -0.8872 32 1 3.3603 -5.9704 0.8927 33 1 0.7621 -8.4526 -1.2441 34 1 0.5018 -6.6944 -1.3392 35 1 2.6642 -9.4916 -2.7724 36 1 4.2073 -8.4856 -4.7479 37 1 3.9421 -5.8796 -4.6775 38 1 3.4767 -8.6367 -0.6625 39 1 3.5881 -8.1852 1.0556 40 1 1.8998 -10.6686 -1.2902 41 1 0.5165 -12.4665 0.1760 42 1 0.5091 -11.5978 2.6482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139472046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:32 Heat of formation + Delta-G solvation = -14.776064 kcal Electronic energy + Delta-G solvation = -26529.529750 eV Core-core repulsion = 22670.710287 eV Total energy + Delta-G solvation = -3858.819464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65841 -43.35428 -40.71348 -38.33103 -36.07085 -34.35142 -34.01591 -33.79477 -32.06542 -31.51286 -29.72511 -27.95881 -27.43824 -24.91631 -23.61096 -22.82459 -22.44925 -21.73713 -21.27111 -21.01846 -19.09688 -18.34008 -17.99303 -17.69280 -17.61743 -17.22630 -16.86764 -16.40070 -16.24660 -15.85250 -15.64662 -15.47096 -15.07791 -14.48777 -14.24469 -14.04960 -13.90879 -13.80611 -13.72616 -13.61256 -13.51763 -13.29450 -12.94874 -12.88616 -12.68537 -12.46608 -12.42631 -12.22660 -11.50657 -10.84912 -10.78627 -10.77657 -10.74684 -9.83886 -9.67057 -9.42568 -9.32092 -8.28398 -6.45241 0.70929 0.84120 1.42671 1.47102 1.55199 1.67812 1.73133 1.80434 2.13433 2.15755 2.31050 2.49672 3.04778 3.06234 3.69945 3.79219 3.89379 4.06262 4.09587 4.18562 4.19685 4.24615 4.29798 4.33000 4.42689 4.52324 4.76225 4.89368 4.96567 4.98789 5.08704 5.11488 5.20548 5.25451 5.26183 5.49528 5.58295 5.62756 5.66778 5.74354 5.83138 5.86064 6.25750 6.30807 6.65586 6.94096 7.24124 7.52711 8.83695 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.003204 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.087773 B = 8737.517849 C =10013.474948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.271 3.729 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.584 6.584 13 C 0.047 3.953 14 N -0.518 5.518 15 C 0.128 3.872 16 C -0.066 4.066 17 C -0.194 4.194 18 C -0.217 4.217 19 C -0.048 4.048 20 O -0.199 6.199 21 C 0.126 3.874 22 C -0.017 4.017 23 C -0.210 4.210 24 C -0.226 4.226 25 C -0.045 4.045 26 O -0.191 6.191 27 H 0.269 0.731 28 H -0.016 1.016 29 H -0.014 1.014 30 H 0.407 0.593 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.225 0.775 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -23.253 -3.942 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.148 3.852 10 N -0.358 5.358 11 C 0.287 3.713 12 O -0.464 6.464 13 C -0.083 4.083 14 N -0.240 5.240 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.214 4.214 18 C -0.236 4.236 19 C -0.115 4.115 20 O -0.095 6.095 21 C 0.000 4.000 22 C -0.067 4.067 23 C -0.229 4.229 24 C -0.245 4.245 25 C -0.113 4.113 26 O -0.087 6.087 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.004 0.996 30 H 0.242 0.758 31 H 0.100 0.900 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 10.105 -22.789 -3.180 25.131 hybrid contribution 0.539 0.797 -0.906 1.322 sum 10.644 -21.992 -4.086 24.771 Atomic orbital electron populations 1.70133 1.08317 1.28611 1.49951 1.26077 0.95764 1.03929 0.93851 0.85212 0.77921 0.76572 0.79539 1.18614 1.21117 1.18570 1.21591 0.94293 0.90575 1.52936 0.89807 1.18475 0.88595 0.84259 0.93828 1.46130 1.11090 1.05440 1.73182 1.21107 0.89799 0.84673 0.75733 1.90603 1.19109 1.85137 1.51583 1.22014 0.94198 0.86905 1.05180 1.61889 1.27939 1.01040 1.33155 1.20946 0.93582 1.04480 0.80961 1.23567 1.03859 0.84341 1.00006 1.21927 1.01169 0.99878 0.98429 1.22152 1.04824 0.94187 1.02409 1.24815 0.95695 0.98343 0.92694 1.84184 1.50447 1.35464 1.39424 1.20652 0.91746 0.84830 1.02767 1.22317 1.03321 0.98550 0.82520 1.21884 1.03916 0.95949 1.01200 1.22147 1.05595 1.03195 0.93575 1.24761 0.99162 0.86268 1.01060 1.84037 1.55643 1.36960 1.32094 0.92267 0.99811 0.99620 0.75788 0.89968 0.84877 0.86728 0.90696 0.81686 0.80868 0.75819 0.89029 0.87428 0.82286 0.81442 0.75311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.56 -30.72 9.28 25.60 0.24 -30.48 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 15.28 5.43 85.63 0.46 15.74 16 10 N -0.71 -30.83 5.55 -466.79 -2.59 -33.42 16 11 C 0.50 20.79 7.57 87.66 0.66 21.45 16 12 O -0.58 -29.81 14.30 -3.03 -0.04 -29.85 16 13 C 0.05 1.36 5.18 85.56 0.44 1.80 16 14 N -0.52 -14.61 4.40 -909.97 -4.00 -18.62 16 15 C 0.13 3.78 5.41 85.56 0.46 4.25 16 16 C -0.07 -1.73 4.90 24.83 0.12 -1.61 16 17 C -0.19 -3.88 9.48 22.19 0.21 -3.67 16 18 C -0.22 -3.91 10.91 22.19 0.24 -3.67 16 19 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 20 O -0.20 -5.79 9.51 -2.53 -0.02 -5.81 16 21 C 0.13 2.63 5.40 85.56 0.46 3.09 16 22 C -0.02 -0.37 6.25 24.83 0.16 -0.22 16 23 C -0.21 -4.00 9.75 22.19 0.22 -3.79 16 24 C -0.23 -3.91 10.91 22.19 0.24 -3.67 16 25 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 26 O -0.19 -4.65 10.65 -2.54 -0.03 -4.68 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.41 14.60 8.32 -92.71 -0.77 13.82 16 31 H 0.08 2.16 5.97 -2.39 -0.01 2.15 16 32 H 0.13 3.00 7.87 -2.39 -0.02 2.98 16 33 H 0.11 3.02 6.48 -2.39 -0.02 3.00 16 34 H 0.07 2.90 5.94 -2.39 -0.01 2.89 16 35 H 0.17 2.48 6.71 -2.91 -0.02 2.46 16 36 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.23 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.09 1.62 6.01 -2.39 -0.01 1.60 16 39 H 0.11 1.92 7.82 -2.39 -0.02 1.90 16 40 H 0.16 2.39 6.71 -2.91 -0.02 2.37 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.23 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -78.89 354.88 1.92 -76.98 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.29 Total: 27.84 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.00 Total: -0.32 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -6.31 Total: -108.85 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.09 Total: -40.35 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.89 1.92 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139472046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.200 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds