Wall clock time and date at job start Tue Mar 31 2020 12:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.50703 * 109.47064 * 90.00051 * 11 10 9 13 13 C 1.38672 * 120.41759 * 269.71919 * 12 11 10 14 14 C 1.38625 * 118.42259 * 179.78105 * 13 12 11 15 15 C 1.38230 * 119.15910 * 0.51866 * 14 13 12 16 16 N 1.31855 * 120.75879 * 359.71947 * 15 14 13 17 17 C 1.31881 * 121.73257 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 19 19 O 1.21291 * 119.99579 * 180.02562 * 18 10 9 20 20 C 1.50697 * 120.00055 * 0.02562 * 18 10 9 21 21 C 1.53001 * 109.46754 * 179.97438 * 20 18 10 22 22 H 1.09002 * 110.77102 * 308.51969 * 21 20 18 23 23 C 1.54575 * 110.87047 * 72.27604 * 21 20 18 24 24 O 1.45833 * 104.44486 * 145.00802 * 23 21 20 25 25 C 1.34062 * 109.90896 * 329.39637 * 24 23 21 26 26 O 1.20825 * 125.09490 * 200.83343 * 25 24 23 27 27 C 1.51330 * 109.81071 * 20.83098 * 25 24 23 28 28 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 30 30 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 31 31 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 32 32 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 33 33 H 1.08010 * 120.79118 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.42470 * 180.26317 * 14 13 12 35 35 H 1.07998 * 119.62158 * 179.70133 * 15 14 13 36 36 H 1.08001 * 119.61815 * 180.02562 * 17 16 15 37 37 H 1.08995 * 109.46788 * 299.99564 * 20 18 10 38 38 H 1.08992 * 109.47134 * 59.99783 * 20 18 10 39 39 H 1.09002 * 110.43371 * 263.75157 * 23 21 20 40 40 H 1.09005 * 110.43708 * 26.26533 * 23 21 20 41 41 H 1.09005 * 110.36626 * 238.84863 * 27 25 24 42 42 H 1.09000 * 110.36648 * 116.52409 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7635 -5.2829 1.7064 13 6 0.6673 -5.0152 2.5124 14 6 -0.1508 -6.0704 2.8853 15 6 0.1574 -7.3468 2.4533 16 7 1.2112 -7.5648 1.6914 17 6 2.0085 -6.5847 1.3133 18 6 2.6400 -4.1254 -1.1658 19 8 3.4279 -5.0476 -1.1659 20 6 2.1499 -3.5529 -2.4708 21 6 2.7955 -4.3089 -3.6338 22 1 3.8784 -4.3483 -3.5155 23 6 2.1995 -5.7290 -3.7661 24 8 2.1832 -5.9843 -5.2018 25 6 2.0176 -4.8331 -5.8684 26 8 1.6134 -4.7394 -7.0032 27 6 2.4126 -3.6684 -4.9866 28 1 -0.4851 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 3.6893 -4.5589 1.1393 32 1 2.6882 -3.3868 2.0295 33 1 0.4536 -4.0080 2.8386 34 1 -1.0156 -5.8981 3.5088 35 1 -0.4721 -8.1751 2.7433 36 1 2.8622 -6.8020 0.6885 37 1 1.0662 -3.6546 -2.5278 38 1 2.4194 -2.4985 -2.5290 39 1 2.8322 -6.4561 -3.2571 40 1 1.1870 -5.7559 -3.3631 41 1 1.5716 -2.9867 -4.8591 42 1 3.2670 -3.1426 -5.4128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152315374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:42 Heat of formation + Delta-G solvation = -90.578623 kcal Electronic energy + Delta-G solvation = -26738.825515 eV Core-core repulsion = 22876.719005 eV Total energy + Delta-G solvation = -3862.106509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96753 -40.13760 -39.08436 -37.39981 -35.49627 -34.15136 -33.11184 -32.21610 -31.47118 -28.95404 -27.70114 -27.27918 -25.58664 -23.51840 -22.96801 -22.23549 -21.21596 -21.02891 -18.62414 -17.29010 -17.05763 -16.74919 -16.61650 -16.39398 -16.13235 -15.81530 -15.54594 -15.24602 -14.67712 -14.43137 -14.03750 -13.74420 -13.52010 -13.44830 -13.18805 -12.88445 -12.68987 -12.49783 -12.21698 -11.94944 -11.92124 -11.58244 -11.42591 -11.20320 -11.10458 -10.98286 -10.85310 -10.49079 -10.35195 -10.14995 -9.99887 -9.67452 -9.38241 -9.28854 -8.84158 -8.69767 -7.98570 -6.34968 -4.43961 1.22593 1.44113 2.08899 3.12603 3.12858 3.19711 3.22599 3.33807 3.59440 3.99862 4.08713 4.18445 4.36022 4.59626 4.67553 4.82153 4.95448 4.98652 5.07817 5.14597 5.22818 5.27456 5.31213 5.43627 5.53943 5.58080 5.66444 5.76300 5.84317 5.98854 6.05063 6.09884 6.18560 6.26359 6.47127 6.53654 6.78963 6.86399 6.96993 7.27482 7.47655 7.58727 7.85824 8.07663 8.11460 8.58868 8.75823 9.25397 10.71475 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.006948 B = 0.005919 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4028.735574 B = 4729.103732 C = 7999.037410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.588 5.588 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.059 4.059 14 C -0.178 4.178 15 C 0.089 3.911 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.518 3.482 19 O -0.572 6.572 20 C -0.128 4.128 21 C -0.104 4.104 22 H 0.107 0.893 23 C 0.063 3.937 24 O -0.351 6.351 25 C 0.484 3.516 26 O -0.467 6.467 27 C -0.186 4.186 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -7.385 1.949 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.318 5.318 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.086 4.086 14 C -0.198 4.198 15 C -0.068 4.068 16 N -0.200 5.200 17 C -0.041 4.041 18 C 0.307 3.693 19 O -0.454 6.454 20 C -0.168 4.168 21 C -0.123 4.123 22 H 0.125 0.875 23 C -0.011 4.011 24 O -0.268 6.268 25 C 0.325 3.675 26 O -0.352 6.352 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.740 -8.728 1.075 8.965 hybrid contribution -0.018 2.219 0.585 2.294 sum 1.723 -6.510 1.660 6.936 Atomic orbital electron populations 1.69900 1.06034 1.27673 1.49040 1.24935 0.94835 0.99328 0.94503 0.86573 0.79583 0.82533 0.78923 1.20002 1.21107 1.20086 1.21425 0.93606 0.90313 1.52908 0.91976 1.19476 0.87453 0.82488 0.98804 1.48243 1.45379 1.34380 1.03775 1.20137 0.95959 0.93269 0.86992 1.21425 0.98118 0.96851 0.98521 1.21644 0.92709 0.99785 0.94428 1.22113 1.01116 0.94087 1.02476 1.22711 0.94075 0.96072 0.93940 1.67713 1.04652 1.36210 1.11460 1.22846 0.97591 0.88018 0.95694 1.20396 0.80777 0.82341 0.85825 1.90586 1.36352 1.30453 1.87969 1.21677 1.01712 1.02653 0.90735 1.22291 1.02980 0.93809 0.93176 0.87490 1.24342 1.02743 0.98349 0.75691 1.87007 1.83681 1.34199 1.21894 1.23192 0.73104 0.84628 0.86534 1.90692 1.41244 1.85526 1.17719 1.23010 1.05451 0.98578 0.95388 0.92285 0.94339 0.94639 0.89577 0.89208 0.84554 0.85079 0.83280 0.82392 0.88722 0.86536 0.86207 0.89934 0.86483 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.49 13.29 55.43 0.74 -21.75 16 2 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 18.94 29.54 -169.99 -5.02 13.92 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -12.47 9.28 -34.44 -0.32 -12.79 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.24 4.85 4.97 -5.19 -0.03 4.82 16 10 N -0.59 -10.32 2.44 -176.42 -0.43 -10.75 16 11 C 0.16 2.51 5.56 -5.19 -0.03 2.48 16 12 C -0.15 -2.17 5.48 -104.48 -0.57 -2.74 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.16 10.11 -39.44 -0.40 -2.56 16 15 C 0.09 1.13 11.18 -17.54 -0.20 0.94 16 16 N -0.49 -7.42 10.36 -13.25 -0.14 -7.56 16 17 C 0.12 1.75 10.86 -17.55 -0.19 1.56 16 18 C 0.52 8.63 7.51 -10.99 -0.08 8.55 16 19 O -0.57 -9.94 14.27 5.55 0.08 -9.86 16 20 C -0.13 -1.83 3.56 -27.88 -0.10 -1.93 16 21 C -0.10 -1.27 2.74 -89.01 -0.24 -1.51 16 22 H 0.11 1.32 7.88 -51.93 -0.41 0.91 16 23 C 0.06 0.78 6.78 37.98 0.26 1.04 16 24 O -0.35 -5.06 11.05 -38.47 -0.43 -5.49 16 25 C 0.48 7.00 8.58 36.31 0.31 7.31 16 26 O -0.47 -8.19 18.00 -18.41 -0.33 -8.52 16 27 C -0.19 -2.13 6.52 -26.79 -0.17 -2.30 16 28 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.04 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.09 1.32 7.37 -51.93 -0.38 0.94 16 32 H 0.09 1.39 8.02 -51.93 -0.42 0.97 16 33 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.16 2.40 7.61 -52.49 -0.40 2.00 16 37 H 0.09 1.31 7.19 -51.93 -0.37 0.93 16 38 H 0.12 1.77 8.00 -51.93 -0.42 1.35 16 39 H 0.12 1.48 7.82 -51.93 -0.41 1.08 16 40 H 0.08 0.99 7.77 -51.93 -0.40 0.58 16 41 H 0.12 1.26 7.80 -51.93 -0.40 0.86 16 42 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -28.28 361.13 -7.94 -36.22 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.60 Total: 5.15 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.25 Total: 3.20 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.17 Total: -40.06 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.68 Total: -23.87 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.28 -7.94 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152315374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.362 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds