Wall clock time and date at job start Tue Mar 31 2020 12:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.50703 * 109.47064 * 90.00051 * 11 10 9 13 13 C 1.38672 * 120.41759 * 269.71919 * 12 11 10 14 14 C 1.38625 * 118.42259 * 179.78105 * 13 12 11 15 15 C 1.38230 * 119.15910 * 0.51866 * 14 13 12 16 16 N 1.31855 * 120.75879 * 359.71947 * 15 14 13 17 17 C 1.31881 * 121.73257 * 0.02562 * 16 15 14 18 18 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 19 19 O 1.21291 * 119.99579 * 180.02562 * 18 10 9 20 20 C 1.50697 * 120.00055 * 0.02562 * 18 10 9 21 21 C 1.53001 * 109.46754 * 179.97438 * 20 18 10 22 22 H 1.09002 * 110.77102 * 308.51969 * 21 20 18 23 23 C 1.54575 * 110.87047 * 72.27604 * 21 20 18 24 24 O 1.45833 * 104.44486 * 145.00802 * 23 21 20 25 25 C 1.34062 * 109.90896 * 329.39637 * 24 23 21 26 26 O 1.20825 * 125.09490 * 200.83343 * 25 24 23 27 27 C 1.51330 * 109.81071 * 20.83098 * 25 24 23 28 28 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 30 30 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 31 31 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 32 32 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 33 33 H 1.08010 * 120.79118 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.42470 * 180.26317 * 14 13 12 35 35 H 1.07998 * 119.62158 * 179.70133 * 15 14 13 36 36 H 1.08001 * 119.61815 * 180.02562 * 17 16 15 37 37 H 1.08995 * 109.46788 * 299.99564 * 20 18 10 38 38 H 1.08992 * 109.47134 * 59.99783 * 20 18 10 39 39 H 1.09002 * 110.43371 * 263.75157 * 23 21 20 40 40 H 1.09005 * 110.43708 * 26.26533 * 23 21 20 41 41 H 1.09005 * 110.36626 * 238.84863 * 27 25 24 42 42 H 1.09000 * 110.36648 * 116.52409 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7635 -5.2829 1.7064 13 6 0.6673 -5.0152 2.5124 14 6 -0.1508 -6.0704 2.8853 15 6 0.1574 -7.3468 2.4533 16 7 1.2112 -7.5648 1.6914 17 6 2.0085 -6.5847 1.3133 18 6 2.6400 -4.1254 -1.1658 19 8 3.4279 -5.0476 -1.1659 20 6 2.1499 -3.5529 -2.4708 21 6 2.7955 -4.3089 -3.6338 22 1 3.8784 -4.3483 -3.5155 23 6 2.1995 -5.7290 -3.7661 24 8 2.1832 -5.9843 -5.2018 25 6 2.0176 -4.8331 -5.8684 26 8 1.6134 -4.7394 -7.0032 27 6 2.4126 -3.6684 -4.9866 28 1 -0.4851 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 3.6893 -4.5589 1.1393 32 1 2.6882 -3.3868 2.0295 33 1 0.4536 -4.0080 2.8386 34 1 -1.0156 -5.8981 3.5088 35 1 -0.4721 -8.1751 2.7433 36 1 2.8622 -6.8020 0.6885 37 1 1.0662 -3.6546 -2.5278 38 1 2.4194 -2.4985 -2.5290 39 1 2.8322 -6.4561 -3.2571 40 1 1.1870 -5.7559 -3.3631 41 1 1.5716 -2.9867 -4.8591 42 1 3.2670 -3.1426 -5.4128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152315374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:42 Heat of formation + Delta-G solvation = -104.788444 kcal Electronic energy + Delta-G solvation = -26739.441699 eV Core-core repulsion = 22876.719005 eV Total energy + Delta-G solvation = -3862.722694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10104 -41.28443 -40.34876 -38.61680 -36.89749 -35.33149 -34.68775 -33.48549 -32.60203 -30.05920 -29.26412 -28.45778 -26.82706 -24.93977 -24.30547 -23.34308 -22.31583 -22.13094 -19.94559 -18.63659 -18.47310 -17.94679 -17.80314 -17.64019 -17.26835 -17.02051 -16.88051 -16.52470 -16.18627 -15.67112 -15.19787 -14.91615 -14.61735 -14.56635 -14.35677 -14.22852 -13.97011 -13.85670 -13.47156 -13.37195 -13.13982 -12.91539 -12.80343 -12.56995 -12.46239 -12.27379 -12.16801 -11.97947 -11.71021 -11.54079 -11.31997 -10.85415 -10.64361 -10.53208 -10.40590 -9.91644 -9.44480 -8.17091 -6.30753 0.15958 0.36234 0.95572 1.45863 1.49125 1.54265 1.80394 2.24939 2.30294 2.46805 2.93762 3.00178 3.14521 3.28824 3.57280 3.60825 3.77099 3.89578 3.94008 4.06657 4.13908 4.16093 4.28332 4.42518 4.52384 4.54956 4.65318 4.73047 4.76014 4.82684 4.91429 4.92503 4.96310 5.13375 5.21234 5.29535 5.39730 5.68026 5.71211 5.81018 5.84096 6.09280 6.33955 6.59901 6.85371 7.04291 7.32936 7.44924 8.87649 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.006948 B = 0.005919 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4028.735574 B = 4729.103732 C = 7999.037410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.593 5.593 11 C 0.162 3.838 12 C -0.154 4.154 13 C -0.070 4.070 14 C -0.169 4.169 15 C 0.087 3.913 16 N -0.513 5.513 17 C 0.106 3.894 18 C 0.513 3.487 19 O -0.578 6.578 20 C -0.122 4.122 21 C -0.094 4.094 22 H 0.109 0.891 23 C 0.064 3.936 24 O -0.364 6.364 25 C 0.485 3.515 26 O -0.504 6.504 27 C -0.173 4.173 28 H 0.266 0.734 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -7.391 2.502 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.133 3.867 10 N -0.322 5.322 11 C 0.039 3.961 12 C -0.157 4.157 13 C -0.096 4.096 14 C -0.189 4.189 15 C -0.070 4.070 16 N -0.221 5.221 17 C -0.051 4.051 18 C 0.303 3.697 19 O -0.461 6.461 20 C -0.162 4.162 21 C -0.113 4.113 22 H 0.128 0.872 23 C -0.009 4.009 24 O -0.280 6.280 25 C 0.329 3.671 26 O -0.391 6.391 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.200 0.800 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.668 -8.752 1.642 9.060 hybrid contribution 0.004 2.126 0.496 2.183 sum 1.671 -6.627 2.138 7.161 Atomic orbital electron populations 1.69984 1.07119 1.28103 1.50491 1.25527 0.95362 1.01883 0.94550 0.85758 0.78445 0.79481 0.78895 1.19477 1.21418 1.20054 1.21646 0.93438 0.91357 1.51683 0.92495 1.19095 0.87393 0.82539 0.97690 1.48200 1.45195 1.33972 1.04859 1.20143 0.96229 0.93501 0.86272 1.21294 0.98638 0.96348 0.99451 1.21803 0.92788 1.00556 0.94468 1.22450 1.01360 0.93250 1.01797 1.23296 0.93463 0.97434 0.92769 1.67719 1.05604 1.36378 1.12445 1.22731 0.97859 0.88270 0.96256 1.20792 0.80500 0.82159 0.86265 1.90585 1.36612 1.30735 1.88122 1.21640 1.02103 1.02301 0.90140 1.22181 1.02874 0.93414 0.92784 0.87230 1.24398 1.03209 0.98545 0.74752 1.86990 1.83448 1.34829 1.22754 1.23601 0.72034 0.85313 0.86196 1.90672 1.43017 1.86053 1.19356 1.22983 1.06649 0.97456 0.93969 0.92467 0.94965 0.96059 0.89593 0.89437 0.84414 0.81898 0.80040 0.83201 0.88211 0.87109 0.86088 0.89338 0.85374 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.19 13.29 21.45 0.28 -45.91 16 2 C 0.03 1.31 5.46 84.65 0.46 1.77 16 3 Si 0.95 38.20 29.54 68.60 2.03 40.22 16 4 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.54 -24.59 9.28 25.60 0.24 -24.35 16 8 H 0.06 2.61 7.81 -2.91 -0.02 2.58 16 9 C 0.25 10.30 4.97 85.64 0.43 10.73 16 10 N -0.59 -20.60 2.44 -830.46 -2.03 -22.63 16 11 C 0.16 5.07 5.56 85.63 0.48 5.55 16 12 C -0.15 -4.52 5.48 -19.77 -0.11 -4.63 16 13 C -0.07 -1.84 9.86 22.47 0.22 -1.62 16 14 C -0.17 -3.70 10.11 22.36 0.23 -3.47 16 15 C 0.09 2.01 11.18 84.69 0.95 2.96 16 16 N -0.51 -14.87 10.36 -195.85 -2.03 -16.90 16 17 C 0.11 3.17 10.86 84.67 0.92 4.09 16 18 C 0.51 16.74 7.51 87.66 0.66 17.40 16 19 O -0.58 -19.71 14.27 -3.06 -0.04 -19.76 16 20 C -0.12 -3.34 3.56 29.85 0.11 -3.23 16 21 C -0.09 -2.14 2.74 -9.75 -0.03 -2.17 16 22 H 0.11 2.51 7.88 -2.39 -0.02 2.49 16 23 C 0.06 1.53 6.78 72.52 0.49 2.03 16 24 O -0.36 -10.17 11.05 -50.14 -0.55 -10.73 16 25 C 0.49 13.56 8.58 71.44 0.61 14.17 16 26 O -0.50 -17.49 18.00 21.64 0.39 -17.10 16 27 C -0.17 -3.61 6.52 30.56 0.20 -3.42 16 28 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 29 H 0.03 1.36 6.44 -2.38 -0.02 1.34 16 30 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 31 H 0.09 2.66 7.37 -2.39 -0.02 2.64 16 32 H 0.09 2.72 8.02 -2.39 -0.02 2.70 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.15 4.61 7.61 -2.91 -0.02 4.59 16 37 H 0.10 2.64 7.19 -2.39 -0.02 2.62 16 38 H 0.11 3.21 8.00 -2.39 -0.02 3.20 16 39 H 0.12 2.88 7.82 -2.39 -0.02 2.87 16 40 H 0.09 2.01 7.77 -2.38 -0.02 1.99 16 41 H 0.13 2.48 7.80 -2.38 -0.02 2.46 16 42 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -59.34 361.13 4.93 -54.41 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.03 Total: 22.59 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.85 Total: 15.80 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.77 Total: -85.44 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.21 Total: -47.58 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Total: -59.34 4.93 -54.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152315374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.377 kcal (2) G-P(sol) polarization free energy of solvation -59.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds