Wall clock time and date at job start Tue Mar 31 2020 12:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47029 * 240.00186 * 3 2 1 5 5 H 1.48494 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46947 * 120.00309 * 3 2 1 7 7 C 1.37880 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00237 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99646 * 90.00181 * 10 9 7 12 12 C 1.50701 * 109.47605 * 90.00235 * 11 10 9 13 13 C 1.38677 * 120.41554 * 270.21612 * 12 11 10 14 14 C 1.38625 * 118.42126 * 180.26631 * 13 12 11 15 15 C 1.38223 * 119.15978 * 359.46985 * 14 13 12 16 16 N 1.31856 * 120.76567 * 0.30777 * 15 14 13 17 17 C 1.31884 * 121.72562 * 359.97275 * 16 15 14 18 18 C 1.34775 * 120.00161 * 269.99937 * 10 9 7 19 19 O 1.21279 * 120.00145 * 180.02562 * 18 10 9 20 20 C 1.50700 * 119.99880 * 0.02562 * 18 10 9 21 21 C 1.53005 * 109.47210 * 180.02562 * 20 18 10 22 22 H 1.08999 * 110.74891 * 57.01270 * 21 20 18 23 23 C 1.54269 * 110.84154 * 293.54576 * 21 20 18 24 24 O 1.45377 * 106.62769 * 226.61594 * 23 21 20 25 25 C 1.34000 * 111.49312 * 357.72929 * 24 23 21 26 26 O 1.20828 * 125.69772 * 199.61807 * 25 24 23 27 27 C 1.51665 * 108.60620 * 19.65634 * 25 24 23 28 28 H 0.97004 * 120.00066 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47220 * 59.99555 * 9 7 2 30 30 H 1.09001 * 109.46886 * 300.00275 * 9 7 2 31 31 H 1.08995 * 109.47462 * 329.99572 * 11 10 9 32 32 H 1.09008 * 109.47165 * 209.99725 * 11 10 9 33 33 H 1.08003 * 120.78603 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.42343 * 179.75479 * 14 13 12 35 35 H 1.08005 * 119.61951 * 180.28273 * 15 14 13 36 36 H 1.07998 * 119.61861 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.47323 * 300.00154 * 20 18 10 38 38 H 1.09001 * 109.47135 * 60.00269 * 20 18 10 39 39 H 1.08997 * 110.02800 * 345.91123 * 23 21 20 40 40 H 1.09001 * 110.02495 * 107.32109 * 23 21 20 41 41 H 1.09001 * 110.70583 * 213.08946 * 27 25 24 42 42 H 1.09006 * 110.71123 * 89.84798 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6797 -4.1700 1.2663 12 6 1.7634 -5.2844 1.7016 13 6 0.6614 -5.0160 2.4995 14 6 -0.1506 -6.0731 2.8803 15 6 0.1566 -7.3488 2.4460 16 7 1.2105 -7.5663 1.6840 17 6 2.0080 -6.5859 1.3071 18 6 2.6399 -4.1244 -1.1695 19 8 3.4276 -5.0466 -1.1705 20 6 2.1497 -3.5508 -2.4740 21 6 2.7942 -4.3065 -3.6378 22 1 2.5808 -5.3733 -3.5710 23 6 4.3153 -4.0526 -3.6818 24 8 4.6468 -3.7504 -5.0646 25 6 3.5694 -3.8330 -5.8571 26 8 3.5859 -3.9660 -7.0579 27 6 2.3257 -3.7306 -4.9951 28 1 -0.4850 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.6881 -3.3887 2.0263 32 1 3.6891 -4.5600 1.1351 33 1 0.4432 -4.0079 2.8198 34 1 -1.0151 -5.9014 3.5046 35 1 -0.4735 -8.1772 2.7345 36 1 2.8618 -6.8027 0.6822 37 1 1.0659 -3.6523 -2.5311 38 1 2.4193 -2.4962 -2.5313 39 1 4.5713 -3.2072 -3.0432 40 1 4.8520 -4.9434 -3.3553 41 1 1.5179 -4.3327 -5.4110 42 1 2.0164 -2.6910 -4.8866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152315465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:47 Heat of formation + Delta-G solvation = -90.052161 kcal Electronic energy + Delta-G solvation = -26701.428782 eV Core-core repulsion = 22839.345102 eV Total energy + Delta-G solvation = -3862.083680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94608 -40.13736 -39.09233 -37.38738 -35.50798 -34.13733 -33.11211 -32.21866 -31.47255 -28.96698 -27.70654 -27.32047 -25.58070 -23.52276 -22.97722 -22.21373 -21.32948 -20.88089 -18.51545 -17.34829 -17.05188 -16.74155 -16.68008 -16.43188 -16.06344 -15.76273 -15.55059 -15.22736 -14.76198 -14.58967 -13.93475 -13.67659 -13.55160 -13.43022 -12.93767 -12.89087 -12.78908 -12.57702 -12.23892 -11.95200 -11.85348 -11.61803 -11.42727 -11.30583 -11.07529 -10.99475 -10.86006 -10.40705 -10.30541 -10.12668 -10.00619 -9.67563 -9.38768 -9.28663 -8.84377 -8.69802 -7.98988 -6.35414 -4.44402 1.22527 1.44099 2.10254 3.12147 3.13094 3.19767 3.22877 3.33599 3.59152 4.00256 4.09051 4.18073 4.34212 4.59258 4.69252 4.82468 4.95311 4.98339 5.07966 5.14432 5.22784 5.26563 5.37943 5.41863 5.55503 5.59222 5.75938 5.79979 5.84476 5.93162 5.99095 6.06022 6.22612 6.26183 6.46880 6.53318 6.86394 6.87164 6.96970 7.26990 7.49967 7.58260 7.85352 8.07093 8.11380 8.58234 8.75068 9.25039 10.71016 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007728 B = 0.005372 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.323326 B = 5211.025849 C = 8113.029623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.588 5.588 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.059 4.059 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.517 3.483 19 O -0.572 6.572 20 C -0.128 4.128 21 C -0.103 4.103 22 H 0.102 0.898 23 C 0.067 3.933 24 O -0.355 6.355 25 C 0.488 3.512 26 O -0.466 6.466 27 C -0.186 4.186 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -7.726 1.972 7.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.318 5.318 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.085 4.085 14 C -0.198 4.198 15 C -0.068 4.068 16 N -0.201 5.201 17 C -0.041 4.041 18 C 0.306 3.694 19 O -0.454 6.454 20 C -0.167 4.167 21 C -0.122 4.122 22 H 0.120 0.880 23 C -0.007 4.007 24 O -0.271 6.271 25 C 0.329 3.671 26 O -0.351 6.351 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.728 -8.908 1.098 9.004 hybrid contribution -0.214 2.078 0.602 2.174 sum 0.514 -6.830 1.700 7.057 Atomic orbital electron populations 1.69899 1.06033 1.27671 1.49025 1.24931 0.94835 0.99320 0.94485 0.86584 0.79609 0.82542 0.78965 1.19965 1.21096 1.20071 1.21422 0.93601 0.90308 1.52947 0.91977 1.19477 0.87456 0.82458 0.98827 1.48243 1.45381 1.34361 1.03769 1.20137 0.95966 0.93253 0.87000 1.21427 0.98056 0.96851 0.98596 1.21645 0.92693 0.99786 0.94421 1.22110 1.01213 0.94073 1.02440 1.22709 0.94065 0.96092 0.93931 1.67715 1.04647 1.36194 1.11533 1.22847 0.97610 0.88035 0.95587 1.20405 0.80835 0.82316 0.85833 1.90586 1.36451 1.30373 1.87974 1.21685 1.02351 1.02072 0.90602 1.22245 0.94475 1.02085 0.93382 0.87995 1.24111 0.95736 1.03564 0.77284 1.86751 1.37615 1.80942 1.21808 1.23185 0.85466 0.71214 0.87231 1.90693 1.86805 1.44740 1.12875 1.23185 0.98202 1.05756 0.95303 0.92287 0.94310 0.94639 0.89187 0.89572 0.84538 0.85074 0.83286 0.82399 0.88190 0.86952 0.88427 0.87853 0.87123 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.41 13.29 55.43 0.74 -21.67 16 2 C 0.07 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 18.96 29.54 -169.99 -5.02 13.94 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.54 -12.42 9.28 -34.44 -0.32 -12.74 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.24 4.83 4.97 -5.20 -0.03 4.80 16 10 N -0.59 -10.27 2.44 -176.44 -0.43 -10.70 16 11 C 0.16 2.51 5.56 -5.20 -0.03 2.48 16 12 C -0.15 -2.18 5.48 -104.48 -0.57 -2.75 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 15 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 16 N -0.49 -7.49 10.36 -13.25 -0.14 -7.63 16 17 C 0.12 1.78 10.86 -17.55 -0.19 1.59 16 18 C 0.52 8.59 7.44 -10.99 -0.08 8.51 16 19 O -0.57 -9.91 14.20 5.56 0.08 -9.84 16 20 C -0.13 -1.81 3.53 -27.88 -0.10 -1.91 16 21 C -0.10 -1.27 2.71 -89.05 -0.24 -1.51 16 22 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 23 C 0.07 0.87 6.47 37.82 0.24 1.11 16 24 O -0.35 -5.26 10.95 -38.27 -0.42 -5.68 16 25 C 0.49 7.15 8.62 36.48 0.31 7.46 16 26 O -0.47 -8.19 18.00 -18.37 -0.33 -8.53 16 27 C -0.19 -2.13 6.51 -26.51 -0.17 -2.30 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.04 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 32 H 0.09 1.32 7.37 -51.92 -0.38 0.93 16 33 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.16 2.43 7.61 -52.49 -0.40 2.03 16 37 H 0.10 1.37 7.40 -51.93 -0.38 0.98 16 38 H 0.11 1.70 7.96 -51.93 -0.41 1.29 16 39 H 0.10 1.28 7.72 -51.93 -0.40 0.88 16 40 H 0.10 1.31 7.99 -51.93 -0.41 0.90 16 41 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.12 1.28 7.91 -51.93 -0.41 0.87 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -28.16 361.13 -7.96 -36.13 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.63 Total: 5.07 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.25 Total: 3.46 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.17 Total: -40.01 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.67 Total: -24.04 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.16 -7.96 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152315465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.925 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds