Wall clock time and date at job start Tue Mar 31 2020 12:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47029 * 240.00186 * 3 2 1 5 5 H 1.48494 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46947 * 120.00309 * 3 2 1 7 7 C 1.37880 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00237 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99646 * 90.00181 * 10 9 7 12 12 C 1.50701 * 109.47605 * 90.00235 * 11 10 9 13 13 C 1.38677 * 120.41554 * 270.21612 * 12 11 10 14 14 C 1.38625 * 118.42126 * 180.26631 * 13 12 11 15 15 C 1.38223 * 119.15978 * 359.46985 * 14 13 12 16 16 N 1.31856 * 120.76567 * 0.30777 * 15 14 13 17 17 C 1.31884 * 121.72562 * 359.97275 * 16 15 14 18 18 C 1.34775 * 120.00161 * 269.99937 * 10 9 7 19 19 O 1.21279 * 120.00145 * 180.02562 * 18 10 9 20 20 C 1.50700 * 119.99880 * 0.02562 * 18 10 9 21 21 C 1.53005 * 109.47210 * 180.02562 * 20 18 10 22 22 H 1.08999 * 110.74891 * 57.01270 * 21 20 18 23 23 C 1.54269 * 110.84154 * 293.54576 * 21 20 18 24 24 O 1.45377 * 106.62769 * 226.61594 * 23 21 20 25 25 C 1.34000 * 111.49312 * 357.72929 * 24 23 21 26 26 O 1.20828 * 125.69772 * 199.61807 * 25 24 23 27 27 C 1.51665 * 108.60620 * 19.65634 * 25 24 23 28 28 H 0.97004 * 120.00066 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47220 * 59.99555 * 9 7 2 30 30 H 1.09001 * 109.46886 * 300.00275 * 9 7 2 31 31 H 1.08995 * 109.47462 * 329.99572 * 11 10 9 32 32 H 1.09008 * 109.47165 * 209.99725 * 11 10 9 33 33 H 1.08003 * 120.78603 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.42343 * 179.75479 * 14 13 12 35 35 H 1.08005 * 119.61951 * 180.28273 * 15 14 13 36 36 H 1.07998 * 119.61861 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.47323 * 300.00154 * 20 18 10 38 38 H 1.09001 * 109.47135 * 60.00269 * 20 18 10 39 39 H 1.08997 * 110.02800 * 345.91123 * 23 21 20 40 40 H 1.09001 * 110.02495 * 107.32109 * 23 21 20 41 41 H 1.09001 * 110.70583 * 213.08946 * 27 25 24 42 42 H 1.09006 * 110.71123 * 89.84798 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6797 -4.1700 1.2663 12 6 1.7634 -5.2844 1.7016 13 6 0.6614 -5.0160 2.4995 14 6 -0.1506 -6.0731 2.8803 15 6 0.1566 -7.3488 2.4460 16 7 1.2105 -7.5663 1.6840 17 6 2.0080 -6.5859 1.3071 18 6 2.6399 -4.1244 -1.1695 19 8 3.4276 -5.0466 -1.1705 20 6 2.1497 -3.5508 -2.4740 21 6 2.7942 -4.3065 -3.6378 22 1 2.5808 -5.3733 -3.5710 23 6 4.3153 -4.0526 -3.6818 24 8 4.6468 -3.7504 -5.0646 25 6 3.5694 -3.8330 -5.8571 26 8 3.5859 -3.9660 -7.0579 27 6 2.3257 -3.7306 -4.9951 28 1 -0.4850 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.6881 -3.3887 2.0263 32 1 3.6891 -4.5600 1.1351 33 1 0.4432 -4.0079 2.8198 34 1 -1.0151 -5.9014 3.5046 35 1 -0.4735 -8.1772 2.7345 36 1 2.8618 -6.8027 0.6822 37 1 1.0659 -3.6523 -2.5311 38 1 2.4193 -2.4962 -2.5313 39 1 4.5713 -3.2072 -3.0432 40 1 4.8520 -4.9434 -3.3553 41 1 1.5179 -4.3327 -5.4110 42 1 2.0164 -2.6910 -4.8866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152315465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:46 Heat of formation + Delta-G solvation = -104.154466 kcal Electronic energy + Delta-G solvation = -26702.040304 eV Core-core repulsion = 22839.345102 eV Total energy + Delta-G solvation = -3862.695202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09602 -41.28383 -40.35342 -38.61828 -36.90507 -35.32653 -34.68528 -33.48636 -32.60234 -30.07215 -29.26242 -28.52044 -26.82320 -24.94518 -24.30849 -23.32237 -22.42280 -22.02092 -19.83869 -18.73288 -18.35988 -18.02944 -17.81613 -17.72304 -17.22813 -16.95884 -16.85292 -16.50187 -16.26261 -15.83884 -15.18027 -14.79553 -14.67187 -14.52733 -14.27157 -14.11363 -14.06969 -13.91463 -13.48155 -13.39400 -13.09161 -12.88211 -12.84747 -12.60301 -12.44773 -12.38420 -12.11205 -12.02509 -11.70525 -11.45149 -11.30951 -10.85229 -10.64620 -10.53025 -10.40395 -9.91739 -9.44338 -8.17409 -6.30610 0.15915 0.36188 0.95338 1.44961 1.48695 1.53246 1.80401 2.22253 2.30023 2.46396 2.93574 3.00182 3.14431 3.26721 3.56297 3.60725 3.77198 3.89278 3.94105 4.06549 4.13846 4.16050 4.35165 4.42349 4.53148 4.57431 4.68130 4.73956 4.75548 4.81724 4.85876 4.91596 4.95239 5.14607 5.21191 5.30272 5.39702 5.68495 5.76515 5.81077 5.84302 6.09345 6.34754 6.59895 6.85413 7.04143 7.32742 7.44849 8.87355 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007728 B = 0.005372 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.323326 B = 5211.025849 C = 8113.029623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.593 5.593 11 C 0.162 3.838 12 C -0.154 4.154 13 C -0.069 4.069 14 C -0.169 4.169 15 C 0.087 3.913 16 N -0.514 5.514 17 C 0.105 3.895 18 C 0.513 3.487 19 O -0.579 6.579 20 C -0.121 4.121 21 C -0.093 4.093 22 H 0.108 0.892 23 C 0.068 3.932 24 O -0.369 6.369 25 C 0.487 3.513 26 O -0.501 6.501 27 C -0.171 4.171 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.022 0.978 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -8.114 2.524 8.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.133 3.867 10 N -0.322 5.322 11 C 0.038 3.962 12 C -0.157 4.157 13 C -0.096 4.096 14 C -0.188 4.188 15 C -0.070 4.070 16 N -0.222 5.222 17 C -0.051 4.051 18 C 0.302 3.698 19 O -0.461 6.461 20 C -0.161 4.161 21 C -0.112 4.112 22 H 0.126 0.874 23 C -0.005 4.005 24 O -0.285 6.285 25 C 0.330 3.670 26 O -0.388 6.388 27 C -0.209 4.209 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.182 0.818 35 H 0.200 0.800 36 H 0.167 0.833 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.087 -9.307 1.664 9.455 hybrid contribution 0.062 2.135 0.511 2.196 sum -0.025 -7.173 2.175 7.495 Atomic orbital electron populations 1.69977 1.07039 1.28074 1.50482 1.25495 0.95349 1.01748 0.94598 0.85801 0.78498 0.79702 0.78835 1.19680 1.21344 1.20051 1.21646 0.93435 0.91367 1.51652 0.92522 1.19100 0.87380 0.82451 0.97776 1.48199 1.45209 1.33956 1.04832 1.20144 0.96233 0.93481 0.86304 1.21298 0.98589 0.96325 0.99514 1.21807 0.92750 1.00582 0.94460 1.22452 1.01450 0.93214 1.01728 1.23302 0.93430 0.97481 0.92742 1.67718 1.05622 1.36364 1.12545 1.22721 0.97885 0.88336 0.96203 1.20809 0.80552 0.82134 0.86288 1.90585 1.36709 1.30689 1.88130 1.21647 1.02932 1.01575 0.89932 1.22157 0.93719 1.02224 0.93087 0.87350 1.24147 0.96404 1.03581 0.76415 1.86731 1.38491 1.80793 1.22532 1.23645 0.86336 0.70048 0.86952 1.90673 1.87352 1.46391 1.14425 1.23163 0.97121 1.06935 0.93691 0.92455 0.94832 0.96013 0.89398 0.89594 0.84370 0.81834 0.79993 0.83319 0.87318 0.87713 0.88639 0.87591 0.84850 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.89 13.29 21.45 0.28 -45.61 16 2 C 0.03 1.37 5.46 84.66 0.46 1.83 16 3 Si 0.95 38.36 29.54 68.60 2.03 40.38 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -24.48 9.28 25.60 0.24 -24.24 16 8 H 0.06 2.59 7.81 -2.91 -0.02 2.56 16 9 C 0.25 10.23 4.97 85.63 0.43 10.66 16 10 N -0.59 -20.49 2.44 -830.51 -2.03 -22.52 16 11 C 0.16 5.06 5.56 85.63 0.48 5.53 16 12 C -0.15 -4.53 5.48 -19.77 -0.11 -4.63 16 13 C -0.07 -1.84 9.86 22.47 0.22 -1.61 16 14 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 15 C 0.09 2.01 11.18 84.69 0.95 2.95 16 16 N -0.51 -14.98 10.36 -195.84 -2.03 -17.01 16 17 C 0.11 3.18 10.86 84.67 0.92 4.10 16 18 C 0.51 16.66 7.44 87.66 0.65 17.31 16 19 O -0.58 -19.71 14.20 -3.02 -0.04 -19.75 16 20 C -0.12 -3.29 3.53 29.85 0.11 -3.18 16 21 C -0.09 -2.13 2.71 -9.78 -0.03 -2.16 16 22 H 0.11 2.41 8.05 -2.39 -0.02 2.39 16 23 C 0.07 1.71 6.47 72.41 0.47 2.18 16 24 O -0.37 -10.70 10.95 -49.59 -0.54 -11.24 16 25 C 0.49 13.80 8.62 71.54 0.62 14.42 16 26 O -0.50 -17.42 18.00 21.60 0.39 -17.03 16 27 C -0.17 -3.56 6.51 30.74 0.20 -3.36 16 28 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 29 H 0.03 1.40 6.44 -2.38 -0.02 1.38 16 30 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.09 2.72 8.03 -2.39 -0.02 2.71 16 32 H 0.09 2.65 7.37 -2.38 -0.02 2.63 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.15 4.64 7.61 -2.91 -0.02 4.62 16 37 H 0.11 2.78 7.40 -2.39 -0.02 2.77 16 38 H 0.10 3.05 7.96 -2.39 -0.02 3.03 16 39 H 0.10 2.45 7.72 -2.39 -0.02 2.43 16 40 H 0.11 2.61 7.99 -2.39 -0.02 2.59 16 41 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.13 2.51 7.91 -2.38 -0.02 2.49 16 Total: -1.00 -59.18 361.13 4.91 -54.27 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.03 Total: 22.15 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.82 Total: 16.35 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.77 Total: -85.13 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.20 Total: -48.02 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.38 kcal Total: -59.18 4.91 -54.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152315465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.884 kcal (2) G-P(sol) polarization free energy of solvation -59.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds