Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00166 * 2 1 4 4 H 1.48506 * 109.46926 * 264.63830 * 3 2 1 5 5 H 1.48498 * 109.47273 * 24.63134 * 3 2 1 6 6 H 1.48497 * 109.47323 * 144.63524 * 3 2 1 7 7 C 1.40056 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99654 * 4.59177 * 7 2 1 9 9 C 1.46374 * 120.00089 * 184.59305 * 7 2 1 10 10 O 1.21690 * 119.99596 * 334.92406 * 9 7 2 11 11 N 1.34769 * 120.00120 * 154.92000 * 9 7 2 12 12 C 1.46283 * 117.74740 * 174.16720 * 11 9 7 13 13 C 1.52033 * 107.72457 * 97.68238 * 12 11 9 14 14 C 1.53100 * 110.33665 * 86.64182 * 13 12 11 15 15 N 1.47075 * 112.58469 * 318.75203 * 14 13 12 16 16 C 1.34774 * 118.36921 * 136.98505 * 15 14 13 17 17 O 1.21517 * 119.99779 * 0.02562 * 16 15 14 18 18 O 1.34676 * 119.99990 * 180.02562 * 16 15 14 19 19 C 1.35939 * 117.00130 * 185.05387 * 18 16 15 20 20 C 1.38724 * 120.05240 * 254.82090 * 19 18 16 21 21 C 1.38145 * 119.94267 * 179.81004 * 20 19 18 22 22 C 1.38270 * 120.05561 * 0.43952 * 21 20 19 23 23 C 1.38265 * 120.10660 * 359.79141 * 22 21 20 24 24 C 1.38141 * 120.05613 * 359.97438 * 23 22 21 25 25 C 1.45249 * 123.26069 * 317.00306 * 15 14 13 26 26 C 1.42145 * 117.74559 * 354.42696 * 11 9 7 27 27 H 0.96993 * 120.00060 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.75208 * 217.23905 * 12 11 9 29 29 H 1.09004 * 109.75205 * 337.97498 * 12 11 9 30 30 H 1.08996 * 109.41335 * 326.32846 * 13 12 11 31 31 H 1.08998 * 109.10621 * 206.76620 * 13 12 11 32 32 H 1.09001 * 108.85620 * 197.95570 * 14 13 12 33 33 H 1.08994 * 108.86056 * 79.55276 * 14 13 12 34 34 H 1.08000 * 120.02775 * 359.97438 * 20 19 18 35 35 H 1.07998 * 119.97193 * 180.22737 * 21 20 19 36 36 H 1.07998 * 119.94441 * 179.76731 * 22 21 20 37 37 H 1.08004 * 119.96880 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.02633 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.58721 * 330.86749 * 25 15 14 40 40 H 1.09002 * 109.69457 * 210.52346 * 25 15 14 41 41 H 1.09003 * 109.63648 * 0.65767 * 26 11 9 42 42 H 1.08992 * 109.63854 * 121.06350 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.6016 1.9809 -1.3940 5 1 1.3862 2.6827 0.5835 6 1 3.4770 1.4755 0.8103 7 6 2.0070 -1.2129 0.0005 8 1 1.4695 -2.1467 -0.0739 9 6 3.4672 -1.2149 0.1021 10 8 4.1038 -0.2443 -0.2632 11 7 4.1066 -2.2917 0.6001 12 6 5.5689 -2.2948 0.5591 13 6 6.0711 -1.8497 1.9233 14 6 6.1770 -3.0494 2.8687 15 7 5.0386 -3.9717 2.7405 16 6 5.2861 -5.2965 2.7265 17 8 6.4278 -5.7022 2.8191 18 8 4.2682 -6.1705 2.6100 19 6 4.5745 -7.4913 2.7087 20 6 4.5988 -8.2856 1.5717 21 6 4.9141 -9.6267 1.6741 22 6 5.1965 -10.1793 2.9097 23 6 5.1682 -9.3907 4.0450 24 6 4.8582 -8.0481 3.9472 25 6 3.6608 -3.5259 2.6278 26 6 3.3135 -3.3487 1.1238 27 1 -0.4850 0.8400 -0.0004 28 1 5.9292 -3.3003 0.3423 29 1 5.9173 -1.6044 -0.2091 30 1 5.3795 -1.1195 2.3434 31 1 7.0538 -1.3921 1.8099 32 1 6.2221 -2.6860 3.8953 33 1 7.0963 -3.5916 2.6481 34 1 4.3739 -7.8554 0.6069 35 1 4.9368 -10.2448 0.7887 36 1 5.4392 -11.2288 2.9881 37 1 5.3888 -9.8247 5.0091 38 1 4.8358 -7.4325 4.8344 39 1 3.5414 -2.5739 3.1450 40 1 2.9970 -4.2682 3.0710 41 1 2.2573 -3.1009 1.0185 42 1 3.5290 -4.2706 0.5839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153722561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = -84.007079 kcal Electronic energy + Delta-G solvation = -27158.513672 eV Core-core repulsion = 23296.692126 eV Total energy + Delta-G solvation = -3861.821546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49244 -40.96169 -39.82101 -38.36040 -37.50681 -35.47499 -35.03468 -34.12596 -31.99139 -31.13851 -29.43907 -29.01140 -27.06211 -24.99695 -24.12224 -23.73081 -22.76119 -21.29607 -20.88335 -19.50576 -19.06539 -18.38803 -17.93273 -17.70377 -17.54806 -16.98828 -16.81909 -16.35871 -15.99998 -15.69302 -15.13112 -14.95424 -14.81947 -14.53924 -14.43756 -14.29045 -13.96492 -13.84131 -13.54842 -13.39791 -13.05966 -12.94558 -12.89270 -12.80856 -12.57316 -12.41185 -12.13055 -11.88079 -11.77522 -11.66753 -11.52002 -11.13754 -10.10145 -9.99283 -9.91502 -9.75064 -9.23819 -8.74468 -6.95792 -0.00683 0.34945 1.18993 1.35018 1.40240 1.52525 1.65175 2.10266 2.35547 2.60600 2.69786 2.94602 3.26376 3.74213 3.90000 3.90663 3.92359 4.08199 4.13675 4.17701 4.20327 4.38214 4.42417 4.44042 4.49935 4.56587 4.61908 4.74365 4.82831 4.93739 4.98216 4.99957 5.18323 5.20854 5.28221 5.33695 5.36343 5.47411 5.48652 5.72414 5.98235 6.06788 6.12336 6.23989 6.64520 7.11829 7.13726 7.96645 8.30902 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023076 B = 0.003381 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.113199 B = 8280.391152 C = 8899.074313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.071 3.929 3 Si 0.997 3.003 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.546 3.454 10 O -0.634 6.634 11 N -0.620 5.620 12 C 0.127 3.873 13 C -0.137 4.137 14 C 0.133 3.867 15 N -0.575 5.575 16 C 0.642 3.358 17 O -0.588 6.588 18 O -0.304 6.304 19 C 0.071 3.929 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.114 4.114 23 C -0.108 4.108 24 C -0.137 4.137 25 C 0.103 3.897 26 C 0.104 3.896 27 H 0.290 0.710 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -17.859 9.505 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.144 4.144 3 Si 0.828 3.172 4 H -0.219 1.219 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.103 0.897 9 C 0.352 3.648 10 O -0.527 6.527 11 N -0.351 5.351 12 C 0.004 3.996 13 C -0.176 4.176 14 C 0.013 3.987 15 N -0.314 5.314 16 C 0.397 3.603 17 O -0.478 6.478 18 O -0.216 6.216 19 C 0.029 3.971 20 C -0.153 4.153 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.155 4.155 25 C -0.020 4.020 26 C -0.022 4.022 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.651 -17.513 9.367 22.081 hybrid contribution -0.126 0.989 -0.365 1.061 sum 9.525 -16.524 9.002 21.090 Atomic orbital electron populations 1.69544 1.08220 1.30854 1.39930 1.26158 0.95246 1.03406 0.89579 0.84893 0.77076 0.76400 0.78810 1.21911 1.23245 1.19497 1.20922 0.89687 0.95250 1.52869 0.89667 1.18492 0.88878 0.81173 0.76226 1.90283 1.69101 1.35794 1.57499 1.46538 1.05730 1.19517 1.63294 1.21012 0.80104 1.00689 0.97749 1.22157 1.03261 0.97153 0.95060 1.21717 0.87267 0.89392 1.00356 1.46875 1.09389 1.01458 1.73679 1.18536 0.82440 0.82925 0.76393 1.90957 1.21411 1.78556 1.56904 1.84350 1.36597 1.15420 1.85216 1.18732 1.03577 0.79953 0.94846 1.21415 1.00732 0.95704 0.97406 1.21418 0.97890 0.93466 0.99719 1.21693 0.98024 1.01662 0.91811 1.21404 0.98271 0.92083 1.00791 1.21505 1.00167 0.97529 0.96322 1.22392 0.80532 1.02008 0.97110 1.21669 0.97925 0.89473 0.93096 0.89991 0.91648 0.91254 0.92434 0.87543 0.89494 0.88925 0.85255 0.82492 0.82086 0.82586 0.85651 0.89349 0.87552 0.87631 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.03 13.92 21.84 0.30 -46.73 16 2 C 0.07 3.91 5.52 85.31 0.47 4.38 16 3 Si 1.00 50.22 26.22 68.60 1.80 52.02 16 4 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.27 -14.24 6.19 99.48 0.62 -13.62 16 7 C -0.55 -29.77 8.82 24.83 0.22 -29.55 16 8 H 0.09 4.63 6.43 -2.91 -0.02 4.62 16 9 C 0.55 27.62 7.10 86.36 0.61 28.23 16 10 O -0.63 -35.07 11.57 -4.32 -0.05 -35.12 16 11 N -0.62 -25.17 2.40 -835.02 -2.00 -27.17 16 12 C 0.13 4.45 5.59 86.10 0.48 4.94 16 13 C -0.14 -3.93 5.75 30.31 0.17 -3.76 16 14 C 0.13 3.40 6.07 86.30 0.52 3.92 16 15 N -0.58 -16.44 2.33 -948.84 -2.21 -18.66 16 16 C 0.64 19.92 8.15 129.79 1.06 20.98 16 17 O -0.59 -20.68 15.21 19.78 0.30 -20.38 16 18 O -0.30 -8.95 8.69 0.27 0.00 -8.95 16 19 C 0.07 1.89 5.11 22.50 0.12 2.00 16 20 C -0.13 -3.10 9.99 22.36 0.22 -2.87 16 21 C -0.11 -1.79 10.04 22.26 0.22 -1.57 16 22 C -0.11 -1.63 10.04 22.28 0.22 -1.40 16 23 C -0.11 -1.78 10.04 22.25 0.22 -1.56 16 24 C -0.14 -3.11 9.66 22.36 0.22 -2.90 16 25 C 0.10 2.99 5.65 87.43 0.49 3.48 16 26 C 0.10 3.66 6.26 87.99 0.55 4.21 16 27 H 0.29 14.68 8.29 -92.71 -0.77 13.91 16 28 H 0.07 2.14 7.84 -2.39 -0.02 2.12 16 29 H 0.07 2.68 7.11 -2.39 -0.02 2.66 16 30 H 0.06 1.90 8.01 -2.39 -0.02 1.89 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.40 6.89 -2.39 -0.02 2.38 16 34 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 40 H 0.11 2.72 7.25 -2.39 -0.02 2.71 16 41 H 0.11 4.12 5.06 -2.39 -0.01 4.11 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.89 344.26 4.89 -65.00 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.95 Total: 11.45 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 5.81 Total: 28.54 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.91 Total: -92.55 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: 0.25 Total: -64.45 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.80 Total: 52.02 kcal Total: -69.89 4.89 -65.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153722561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.007 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds