Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47253 * 240.00122 * 3 2 1 5 5 H 1.48496 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46858 * 119.99941 * 3 2 1 7 7 C 1.37879 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.35894 * 116.99925 * 180.02562 * 10 9 7 12 12 C 1.38810 * 120.02168 * 0.02562 * 11 10 9 13 13 C 1.38175 * 120.08663 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.12046 * 359.74199 * 13 12 11 15 15 C 1.38887 * 120.04330 * 0.51091 * 14 13 12 16 16 N 1.39918 * 120.04633 * 179.76950 * 15 14 13 17 17 C 1.34780 * 120.00082 * 214.81619 * 16 15 14 18 18 O 1.21281 * 120.00158 * 355.37611 * 17 16 15 19 19 C 1.50702 * 119.99980 * 175.37734 * 17 16 15 20 20 N 1.46499 * 109.47140 * 179.97438 * 19 17 16 21 21 C 1.46763 * 124.35313 * 269.72602 * 20 19 17 22 22 C 1.54663 * 105.38289 * 162.85569 * 21 20 19 23 23 C 1.54628 * 101.68418 * 25.76611 * 22 21 20 24 24 C 1.34421 * 124.34670 * 90.02563 * 20 19 17 25 25 O 1.21289 * 124.94559 * 0.43188 * 24 20 19 26 26 C 1.38586 * 120.02084 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47071 * 60.00042 * 9 7 2 29 29 H 1.08996 * 109.47573 * 300.00088 * 9 7 2 30 30 H 1.08004 * 119.95829 * 359.95089 * 12 11 10 31 31 H 1.07993 * 119.93899 * 179.97438 * 13 12 11 32 32 H 1.08002 * 119.97919 * 180.27790 * 14 13 12 33 33 H 0.97003 * 120.00278 * 34.81389 * 16 15 14 34 34 H 1.09002 * 109.47212 * 60.00356 * 19 17 16 35 35 H 1.08997 * 109.47229 * 300.00054 * 19 17 16 36 36 H 1.08997 * 110.24606 * 281.98337 * 21 20 19 37 37 H 1.09002 * 110.24124 * 43.98673 * 21 20 19 38 38 H 1.09005 * 111.18873 * 267.59520 * 22 21 20 39 39 H 1.08998 * 110.82348 * 143.78108 * 22 21 20 40 40 H 1.09003 * 110.48435 * 216.31146 * 23 22 21 41 41 H 1.09000 * 110.59978 * 93.72540 * 23 22 21 42 42 H 1.07994 * 120.05649 * 0.04922 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.6601 -4.8411 -0.0011 12 6 0.2840 -5.0234 -0.0021 13 6 -0.2457 -6.2996 -0.0032 14 6 0.5924 -7.3981 -0.0086 15 6 1.9700 -7.2218 -0.0023 16 7 2.8187 -8.3342 -0.0029 17 6 3.9865 -8.2912 0.6685 18 8 4.3412 -7.2619 1.2030 19 6 4.8517 -9.5221 0.7551 20 7 6.0565 -9.2186 1.5313 21 6 7.3109 -8.7223 0.9533 22 6 8.1097 -8.1417 2.1436 23 6 7.5349 -8.9496 3.3302 24 6 6.1569 -9.3644 2.8638 25 8 5.2716 -9.7699 3.5870 26 6 2.5038 -5.9405 -0.0016 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 -0.3736 -4.1667 -0.0017 31 1 -1.3166 -6.4387 -0.0036 32 1 0.1759 -8.3946 -0.0140 33 1 2.5665 -9.1364 -0.4865 34 1 5.1365 -9.8373 -0.2487 35 1 4.2964 -10.3228 1.2435 36 1 7.8618 -9.5401 0.4889 37 1 7.1057 -7.9410 0.2214 38 1 7.9151 -7.0762 2.2665 39 1 9.1764 -8.3306 2.0233 40 1 7.4642 -8.3233 4.2195 41 1 8.1500 -9.8269 3.5306 42 1 3.5746 -5.8005 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154422989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -74.371110 kcal Electronic energy + Delta-G solvation = -25731.376012 eV Core-core repulsion = 21869.972313 eV Total energy + Delta-G solvation = -3861.403699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97145 -40.06084 -38.80248 -36.84120 -36.50936 -34.39087 -33.22775 -32.88611 -30.20105 -29.34987 -27.84133 -27.47172 -27.31204 -23.47326 -22.67141 -22.23339 -21.55763 -20.47097 -19.66298 -18.12058 -17.55535 -16.97202 -16.70629 -16.46460 -15.84744 -15.64713 -15.39447 -15.15070 -14.65503 -14.52150 -14.31762 -14.11112 -13.95444 -13.82916 -13.30587 -13.11936 -12.87440 -12.74847 -12.50323 -12.13131 -11.95118 -11.76468 -11.42156 -11.33003 -11.04482 -11.00079 -10.85032 -10.46516 -10.22853 -10.06365 -9.98508 -9.82973 -9.26078 -9.00318 -8.58273 -8.03219 -7.46451 -6.22480 -4.25948 1.59673 1.91809 2.20742 2.53191 2.58214 3.09699 3.28002 3.30489 3.34335 4.03650 4.14690 4.17319 4.23845 4.42295 4.53877 4.65557 4.68139 4.75300 4.88364 5.12007 5.14564 5.21926 5.26982 5.41926 5.42143 5.51864 5.72014 5.72285 5.74320 5.93877 6.04666 6.15741 6.48449 6.60236 6.76224 6.78559 6.86204 7.05216 7.17784 7.28854 7.33983 7.70846 7.89375 7.98397 8.04457 8.51003 8.87018 9.38984 10.88820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.002887 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.757784 B = 9695.982221 C =11250.394325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.314 6.314 11 C 0.169 3.831 12 C -0.224 4.224 13 C -0.063 4.063 14 C -0.201 4.201 15 C 0.171 3.829 16 N -0.670 5.670 17 C 0.487 3.513 18 O -0.498 6.498 19 C 0.111 3.889 20 N -0.606 5.606 21 C 0.104 3.896 22 C -0.131 4.131 23 C -0.152 4.152 24 C 0.523 3.477 25 O -0.529 6.529 26 C -0.169 4.169 27 H 0.268 0.732 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.409 0.591 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.878 -23.090 -1.424 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.088 0.912 9 C 0.120 3.880 10 O -0.227 6.227 11 C 0.120 3.880 12 C -0.243 4.243 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.078 3.922 16 N -0.316 5.316 17 C 0.272 3.728 18 O -0.371 6.371 19 C -0.015 4.015 20 N -0.340 5.340 21 C -0.019 4.019 22 C -0.169 4.169 23 C -0.193 4.193 24 C 0.312 3.688 25 O -0.405 6.405 26 C -0.189 4.189 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.244 0.756 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.718 -22.395 -0.647 25.284 hybrid contribution -0.223 0.588 -0.340 0.715 sum 11.495 -21.807 -0.987 24.671 Atomic orbital electron populations 1.69943 1.06123 1.27694 1.49586 1.24934 0.95055 0.99518 0.94681 0.86293 0.79274 0.81363 0.79004 1.19847 1.20990 1.19829 1.20953 0.94276 0.88777 1.52229 0.91183 1.20657 0.88655 0.81743 0.96898 1.86132 1.39087 1.11702 1.85738 1.19050 0.91266 0.86416 0.91229 1.21497 0.94796 0.98640 1.09365 1.20655 0.99084 0.91495 0.96961 1.20557 0.91165 0.98999 1.11449 1.17264 0.89026 0.85928 1.00019 1.43372 1.19899 1.16329 1.52025 1.21395 0.81766 0.91208 0.78395 1.90788 1.70697 1.31729 1.43847 1.21141 0.86307 0.95452 0.98622 1.47806 1.11980 1.66339 1.07863 1.22172 0.83673 0.98996 0.97034 1.22623 1.00127 1.01066 0.93041 1.22299 0.94324 1.02257 1.00376 1.20979 0.89930 0.76299 0.81636 1.90739 1.45069 1.46488 1.58212 1.20341 1.00793 0.88947 1.08862 0.92290 0.95995 0.96028 0.84777 0.85918 0.86373 0.75579 0.86950 0.86734 0.90751 0.89986 0.89401 0.89072 0.87805 0.87796 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.44 9.43 -34.44 -0.32 -15.76 16 8 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 9 C 0.19 5.32 4.49 36.01 0.16 5.49 16 10 O -0.31 -8.13 10.12 -19.41 -0.20 -8.33 16 11 C 0.17 3.74 6.68 -39.24 -0.26 3.48 16 12 C -0.22 -4.42 9.04 -39.39 -0.36 -4.78 16 13 C -0.06 -1.01 10.03 -39.63 -0.40 -1.40 16 14 C -0.20 -2.90 9.96 -39.37 -0.39 -3.29 16 15 C 0.17 2.71 6.30 -83.72 -0.53 2.18 16 16 N -0.67 -7.74 5.34 -9.88 -0.05 -7.79 16 17 C 0.49 6.27 7.74 -10.98 -0.09 6.18 16 18 O -0.50 -8.94 13.87 5.56 0.08 -8.86 16 19 C 0.11 0.93 6.42 -5.19 -0.03 0.90 16 20 N -0.61 -5.91 2.42 -173.67 -0.42 -6.33 16 21 C 0.10 0.69 7.36 -3.02 -0.02 0.67 16 22 C -0.13 -0.81 7.19 -25.00 -0.18 -0.99 16 23 C -0.15 -1.19 6.86 -26.74 -0.18 -1.37 16 24 C 0.52 6.31 8.02 -10.86 -0.09 6.23 16 25 O -0.53 -8.67 17.59 5.55 0.10 -8.57 16 26 C -0.17 -3.33 8.63 -39.25 -0.34 -3.67 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.13 2.76 6.29 -52.48 -0.33 2.43 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.41 2.83 8.82 -40.82 -0.36 2.47 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.88 7.92 -51.93 -0.41 0.46 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.14 2.90 6.22 -52.49 -0.33 2.57 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -38.11 360.90 -8.04 -46.15 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.57 Total: 1.77 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.13 Total: -4.52 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.26 Total: -39.74 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.02 Total: -25.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.11 -8.04 -46.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154422989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.225 kcal (2) G-P(sol) polarization free energy of solvation -38.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds