Wall clock time and date at job start Tue Mar 31 2020 12:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47253 * 240.00122 * 3 2 1 5 5 H 1.48496 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46858 * 119.99941 * 3 2 1 7 7 C 1.37879 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.35894 * 116.99925 * 180.02562 * 10 9 7 12 12 C 1.38810 * 120.02168 * 0.02562 * 11 10 9 13 13 C 1.38175 * 120.08663 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.12046 * 359.74199 * 13 12 11 15 15 C 1.38887 * 120.04330 * 0.51091 * 14 13 12 16 16 N 1.39918 * 120.04633 * 179.76950 * 15 14 13 17 17 C 1.34780 * 120.00082 * 214.81619 * 16 15 14 18 18 O 1.21281 * 120.00158 * 355.37611 * 17 16 15 19 19 C 1.50702 * 119.99980 * 175.37734 * 17 16 15 20 20 N 1.46499 * 109.47140 * 179.97438 * 19 17 16 21 21 C 1.46763 * 124.35313 * 269.72602 * 20 19 17 22 22 C 1.54663 * 105.38289 * 162.85569 * 21 20 19 23 23 C 1.54628 * 101.68418 * 25.76611 * 22 21 20 24 24 C 1.34421 * 124.34670 * 90.02563 * 20 19 17 25 25 O 1.21289 * 124.94559 * 0.43188 * 24 20 19 26 26 C 1.38586 * 120.02084 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47071 * 60.00042 * 9 7 2 29 29 H 1.08996 * 109.47573 * 300.00088 * 9 7 2 30 30 H 1.08004 * 119.95829 * 359.95089 * 12 11 10 31 31 H 1.07993 * 119.93899 * 179.97438 * 13 12 11 32 32 H 1.08002 * 119.97919 * 180.27790 * 14 13 12 33 33 H 0.97003 * 120.00278 * 34.81389 * 16 15 14 34 34 H 1.09002 * 109.47212 * 60.00356 * 19 17 16 35 35 H 1.08997 * 109.47229 * 300.00054 * 19 17 16 36 36 H 1.08997 * 110.24606 * 281.98337 * 21 20 19 37 37 H 1.09002 * 110.24124 * 43.98673 * 21 20 19 38 38 H 1.09005 * 111.18873 * 267.59520 * 22 21 20 39 39 H 1.08998 * 110.82348 * 143.78108 * 22 21 20 40 40 H 1.09003 * 110.48435 * 216.31146 * 23 22 21 41 41 H 1.09000 * 110.59978 * 93.72540 * 23 22 21 42 42 H 1.07994 * 120.05649 * 0.04922 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.6601 -4.8411 -0.0011 12 6 0.2840 -5.0234 -0.0021 13 6 -0.2457 -6.2996 -0.0032 14 6 0.5924 -7.3981 -0.0086 15 6 1.9700 -7.2218 -0.0023 16 7 2.8187 -8.3342 -0.0029 17 6 3.9865 -8.2912 0.6685 18 8 4.3412 -7.2619 1.2030 19 6 4.8517 -9.5221 0.7551 20 7 6.0565 -9.2186 1.5313 21 6 7.3109 -8.7223 0.9533 22 6 8.1097 -8.1417 2.1436 23 6 7.5349 -8.9496 3.3302 24 6 6.1569 -9.3644 2.8638 25 8 5.2716 -9.7699 3.5870 26 6 2.5038 -5.9405 -0.0016 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 -0.3736 -4.1667 -0.0017 31 1 -1.3166 -6.4387 -0.0036 32 1 0.1759 -8.3946 -0.0140 33 1 2.5665 -9.1364 -0.4865 34 1 5.1365 -9.8373 -0.2487 35 1 4.2964 -10.3228 1.2435 36 1 7.8618 -9.5401 0.4889 37 1 7.1057 -7.9410 0.2214 38 1 7.9151 -7.0762 2.2665 39 1 9.1764 -8.3306 2.0233 40 1 7.4642 -8.3233 4.2195 41 1 8.1500 -9.8269 3.5306 42 1 3.5746 -5.8005 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154422989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:35 Heat of formation + Delta-G solvation = -102.146537 kcal Electronic energy + Delta-G solvation = -25732.580445 eV Core-core repulsion = 21869.972313 eV Total energy + Delta-G solvation = -3862.608132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94479 -41.18155 -40.26758 -38.34614 -37.43507 -35.68063 -35.05773 -33.93460 -31.70915 -30.67817 -29.45559 -28.48029 -28.30351 -25.37424 -24.09340 -23.04038 -22.75154 -21.73696 -20.53201 -19.53287 -18.72067 -18.57657 -17.86590 -17.44194 -17.09102 -16.96132 -16.73484 -16.49357 -16.45055 -16.23821 -15.67967 -15.14300 -14.77788 -14.72252 -14.52871 -14.43598 -13.93653 -13.84578 -13.75680 -13.40457 -13.11374 -13.10793 -12.88696 -12.77644 -12.50310 -12.31934 -12.16832 -12.12199 -11.92028 -11.47003 -11.32081 -11.06770 -10.94917 -10.74909 -9.82263 -9.44578 -9.00966 -8.43136 -6.58259 0.21151 0.47918 1.31513 1.35737 1.41280 1.48646 1.49877 1.82637 2.15587 2.27510 2.71194 2.81768 2.91071 3.40334 3.59871 3.65853 3.92351 4.04764 4.13624 4.16570 4.19727 4.22405 4.27831 4.34940 4.55145 4.64082 4.65177 4.69889 4.80181 4.87598 4.91783 5.05976 5.21057 5.22402 5.26521 5.37146 5.40148 5.45175 5.52632 5.79502 5.92079 6.00745 6.35997 6.45544 6.75713 7.03309 7.10068 7.13871 8.69121 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.002887 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.757784 B = 9695.982221 C =11250.394325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.214 3.786 10 O -0.343 6.343 11 C 0.122 3.878 12 C -0.242 4.242 13 C -0.055 4.055 14 C -0.175 4.175 15 C 0.178 3.822 16 N -0.651 5.651 17 C 0.482 3.518 18 O -0.557 6.557 19 C 0.114 3.886 20 N -0.608 5.608 21 C 0.099 3.901 22 C -0.126 4.126 23 C -0.149 4.149 24 C 0.505 3.495 25 O -0.586 6.586 26 C -0.184 4.184 27 H 0.276 0.724 28 H 0.006 0.994 29 H -0.001 1.001 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.436 0.564 34 H 0.165 0.835 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.133 0.867 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.770 -25.673 -2.520 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.601 4.601 8 H 0.081 0.919 9 C 0.141 3.859 10 O -0.257 6.257 11 C 0.075 3.925 12 C -0.261 4.261 13 C -0.073 4.073 14 C -0.195 4.195 15 C 0.083 3.917 16 N -0.300 5.300 17 C 0.269 3.731 18 O -0.433 6.433 19 C -0.012 4.012 20 N -0.340 5.340 21 C -0.022 4.022 22 C -0.163 4.163 23 C -0.189 4.189 24 C 0.295 3.705 25 O -0.466 6.466 26 C -0.205 4.205 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.017 0.983 30 H 0.131 0.869 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.276 0.724 34 H 0.183 0.817 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.618 -25.049 -1.805 28.105 hybrid contribution -0.539 1.193 -0.019 1.309 sum 12.079 -23.855 -1.824 26.801 Atomic orbital electron populations 1.70045 1.07711 1.29238 1.49181 1.25987 0.96098 1.03364 0.93231 0.85143 0.78120 0.76128 0.79491 1.18701 1.19336 1.19116 1.21295 0.94276 0.90347 1.54192 0.91894 1.20183 0.88345 0.82467 0.94911 1.86041 1.39144 1.13094 1.87443 1.19449 0.92958 0.85325 0.94776 1.21489 0.93486 1.00158 1.11013 1.21101 1.01360 0.89920 0.94917 1.21111 0.89981 1.00921 1.07518 1.17415 0.90497 0.85669 0.98113 1.43299 1.19038 1.15920 1.51735 1.22392 0.81853 0.91872 0.76949 1.90786 1.71971 1.34318 1.46241 1.21435 0.85449 0.92918 1.01393 1.48075 1.13198 1.65146 1.07561 1.22459 0.82729 1.00172 0.96869 1.22665 1.02160 0.99413 0.92088 1.22363 0.92543 1.03422 1.00532 1.21766 0.90880 0.75529 0.82281 1.90691 1.47086 1.49213 1.59623 1.20337 0.99620 0.90293 1.10291 0.91554 0.97658 0.98312 0.86879 0.82041 0.81003 0.72350 0.81722 0.85497 0.86740 0.90845 0.91686 0.85452 0.88744 0.84875 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 13.29 21.45 0.28 -55.65 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.99 45.07 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.56 -35.06 9.43 25.60 0.24 -34.82 16 8 H 0.06 3.88 7.81 -2.91 -0.02 3.86 16 9 C 0.21 12.81 4.49 71.24 0.32 13.13 16 10 O -0.34 -19.42 10.12 -92.36 -0.93 -20.36 16 11 C 0.12 5.78 6.68 22.49 0.15 5.93 16 12 C -0.24 -10.04 9.04 22.39 0.20 -9.84 16 13 C -0.05 -1.64 10.03 22.24 0.22 -1.41 16 14 C -0.18 -4.45 9.96 22.41 0.22 -4.22 16 15 C 0.18 5.40 6.30 38.14 0.24 5.64 16 16 N -0.65 -13.42 5.34 -303.55 -1.62 -15.04 16 17 C 0.48 11.84 7.74 87.66 0.68 12.52 16 18 O -0.56 -20.66 13.87 -3.03 -0.04 -20.70 16 19 C 0.11 1.60 6.42 85.63 0.55 2.15 16 20 N -0.61 -10.84 2.42 -821.95 -1.99 -12.83 16 21 C 0.10 1.08 7.36 86.90 0.64 1.72 16 22 C -0.13 -1.34 7.19 31.72 0.23 -1.11 16 23 C -0.15 -2.17 6.86 30.59 0.21 -1.96 16 24 C 0.51 12.01 8.02 87.90 0.70 12.71 16 25 O -0.59 -19.60 17.59 -3.06 -0.05 -19.66 16 26 C -0.18 -7.63 8.63 22.49 0.19 -7.44 16 27 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.01 0.34 7.66 -2.39 -0.02 0.33 16 29 H 0.00 -0.06 7.66 -2.39 -0.02 -0.07 16 30 H 0.11 5.07 6.29 -2.91 -0.02 5.06 16 31 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.44 4.12 8.82 -92.71 -0.82 3.30 16 34 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.13 1.56 7.92 -2.39 -0.02 1.54 16 36 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 39 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.12 5.33 6.22 -2.91 -0.02 5.31 16 Total: -1.00 -92.73 360.90 3.17 -89.56 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.23 Total: 13.38 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.27 Total: -5.80 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.32 Total: -83.52 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -1.03 Total: -60.71 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -92.73 3.17 -89.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154422989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.590 kcal (2) G-P(sol) polarization free energy of solvation -92.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds