Wall clock time and date at job start Tue Mar 31 2020 12:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99619 * 90.00051 * 10 9 7 12 12 C 1.50707 * 109.47188 * 90.00204 * 11 10 9 13 13 C 1.38227 * 119.61875 * 94.72807 * 12 11 10 14 14 C 1.38626 * 119.16180 * 179.75956 * 13 12 11 15 15 C 1.38673 * 118.41783 * 0.50089 * 14 13 12 16 16 C 1.38182 * 119.16395 * 359.73754 * 15 14 13 17 17 N 1.31852 * 119.61598 * 274.99866 * 12 11 10 18 18 C 1.34774 * 120.00261 * 270.00227 * 10 9 7 19 19 O 1.21270 * 120.00172 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99638 * 359.97438 * 18 10 9 21 21 C 1.53002 * 109.46771 * 180.02562 * 20 18 10 22 22 H 1.08998 * 110.76715 * 308.51892 * 21 20 18 23 23 C 1.54570 * 110.86921 * 72.27419 * 21 20 18 24 24 O 1.45836 * 104.44185 * 145.01104 * 23 21 20 25 25 C 1.34065 * 109.90760 * 329.39351 * 24 23 21 26 26 O 1.20825 * 125.09148 * 200.82919 * 25 24 23 27 27 C 1.51327 * 109.80850 * 20.83519 * 25 24 23 28 28 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 31 31 H 1.09006 * 109.47349 * 209.99918 * 11 10 9 32 32 H 1.09003 * 109.47665 * 330.00083 * 11 10 9 33 33 H 1.08000 * 120.41578 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.79324 * 180.21257 * 14 13 12 35 35 H 1.08004 * 120.42101 * 179.71364 * 15 14 13 36 36 H 1.08002 * 119.61947 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.46731 * 300.00166 * 20 18 10 38 38 H 1.08993 * 109.47109 * 60.00140 * 20 18 10 39 39 H 1.08996 * 110.43912 * 263.75285 * 23 21 20 40 40 H 1.09005 * 110.44124 * 26.27020 * 23 21 20 41 41 H 1.09003 * 110.36750 * 238.84045 * 27 25 24 42 42 H 1.09002 * 110.36463 * 116.52154 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 1.2682 12 6 1.7624 -5.2837 1.7033 13 6 2.0763 -6.5911 1.3826 14 6 1.2290 -7.6091 1.7919 15 6 0.0870 -7.2715 2.5025 16 6 -0.1638 -5.9417 2.7818 17 7 0.6674 -4.9997 2.3807 18 6 2.6411 -4.1249 -1.1677 19 8 3.4288 -5.0469 -1.1677 20 6 2.1510 -3.5525 -2.4728 21 6 2.7968 -4.3085 -3.6357 22 1 3.8796 -4.3479 -3.5173 23 6 2.2009 -5.7286 -3.7679 24 8 2.1848 -5.9841 -5.2036 25 6 2.0191 -4.8329 -5.8703 26 8 1.6152 -4.7393 -7.0052 27 6 2.4141 -3.6682 -4.9885 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.6886 -4.5594 1.1380 32 1 2.6868 -3.3877 2.0279 33 1 2.9722 -6.8169 0.8233 34 1 1.4505 -8.6400 1.5588 35 1 -0.5980 -8.0383 2.8331 36 1 -1.0513 -5.6705 3.3344 37 1 1.0673 -3.6550 -2.5303 38 1 2.4198 -2.4978 -2.5307 39 1 2.8334 -6.4558 -3.2589 40 1 1.1883 -5.7555 -3.3651 41 1 1.5731 -2.9865 -4.8613 42 1 3.2685 -3.1424 -5.4147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163131766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:18 Heat of formation + Delta-G solvation = -87.161781 kcal Electronic energy + Delta-G solvation = -26737.985849 eV Core-core repulsion = 22876.027505 eV Total energy + Delta-G solvation = -3861.958344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96982 -40.12898 -39.04092 -37.39996 -35.32106 -34.12937 -32.88123 -32.26108 -31.54618 -28.98000 -27.71845 -27.24639 -25.67919 -23.41459 -22.93257 -22.21674 -21.22180 -21.03246 -18.60748 -17.27779 -16.97380 -16.63219 -16.51572 -16.37204 -16.11755 -15.68542 -15.54084 -15.33840 -14.69634 -14.40832 -14.08370 -13.75227 -13.52245 -13.33974 -13.20031 -12.96958 -12.59093 -12.38302 -12.17543 -11.91066 -11.71429 -11.57453 -11.40467 -11.17041 -11.04969 -10.95516 -10.77474 -10.49316 -10.25664 -10.14614 -9.88610 -9.73124 -9.36069 -9.21248 -8.83540 -8.59993 -7.91071 -6.23575 -4.31711 1.22184 1.43613 2.08320 3.15631 3.18522 3.27110 3.29817 3.32617 3.59436 4.00110 4.12758 4.26554 4.37854 4.52952 4.69322 4.82644 4.90122 4.96752 5.10061 5.18320 5.28074 5.29478 5.32612 5.46235 5.54329 5.66078 5.70961 5.72489 5.84217 5.93593 6.09999 6.14758 6.21413 6.28513 6.32293 6.65349 6.77814 6.84523 7.12750 7.40849 7.47068 7.70414 7.98360 8.15030 8.25657 8.67087 8.82943 9.36321 10.83222 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.005915 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.364876 B = 4732.740148 C = 7967.943417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.236 3.764 10 N -0.583 5.583 11 C 0.167 3.833 12 C 0.120 3.880 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.095 3.905 17 N -0.464 5.464 18 C 0.517 3.483 19 O -0.575 6.575 20 C -0.128 4.128 21 C -0.103 4.103 22 H 0.107 0.893 23 C 0.063 3.937 24 O -0.352 6.352 25 C 0.485 3.515 26 O -0.467 6.467 27 C -0.186 4.186 28 H 0.266 0.734 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -11.165 0.928 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.312 5.312 11 C 0.043 3.957 12 C -0.020 4.020 13 C -0.173 4.173 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.062 4.062 17 N -0.174 5.174 18 C 0.305 3.695 19 O -0.457 6.457 20 C -0.168 4.168 21 C -0.122 4.122 22 H 0.125 0.875 23 C -0.011 4.011 24 O -0.269 6.269 25 C 0.326 3.674 26 O -0.352 6.352 27 C -0.224 4.224 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.170 0.830 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.176 -10.771 0.530 11.001 hybrid contribution 0.356 0.289 0.081 0.465 sum 2.532 -10.482 0.611 10.801 Atomic orbital electron populations 1.69924 1.06010 1.27366 1.49268 1.24929 0.94815 0.99239 0.94667 0.86533 0.79866 0.83024 0.78271 1.20495 1.21073 1.19789 1.21453 0.93535 0.90396 1.52590 0.92047 1.19542 0.87422 0.82134 0.99257 1.48200 1.45250 1.34319 1.03471 1.20153 0.94772 0.93533 0.87290 1.21873 0.92997 0.94054 0.93026 1.22125 1.01399 0.93361 1.00422 1.21555 0.93924 0.99636 0.95848 1.22103 0.98665 0.98107 1.01237 1.22773 0.97915 0.88834 0.96706 1.67602 1.02873 1.37355 1.09534 1.20413 0.80818 0.82354 0.85876 1.90568 1.36530 1.30607 1.88018 1.21678 1.01705 1.02704 0.90672 1.22286 1.02972 0.93760 0.93205 0.87495 1.24334 1.02697 0.98392 0.75686 1.87002 1.83717 1.34250 1.21891 1.23197 0.73091 0.84621 0.86530 1.90692 1.41236 1.85524 1.17711 1.23011 1.05490 0.98571 0.95369 0.92463 0.94657 0.93426 0.89203 0.88504 0.84375 0.85270 0.85283 0.83039 0.88731 0.86474 0.86294 0.89954 0.86441 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.11 9.28 -34.44 -0.32 -13.43 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.24 5.21 4.97 -5.19 -0.03 5.18 16 10 N -0.58 -10.95 2.44 -176.42 -0.43 -11.38 16 11 C 0.17 2.87 5.71 -5.19 -0.03 2.84 16 12 C 0.12 1.95 6.36 -82.58 -0.53 1.42 16 13 C -0.15 -2.14 9.72 -39.44 -0.38 -2.52 16 14 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 15 C -0.18 -2.07 10.11 -39.44 -0.40 -2.46 16 16 C 0.10 1.29 11.18 -17.55 -0.20 1.10 16 17 N -0.46 -7.88 10.27 -9.47 -0.10 -7.97 16 18 C 0.52 8.89 7.51 -10.98 -0.08 8.81 16 19 O -0.58 -10.09 14.64 5.57 0.08 -10.01 16 20 C -0.13 -1.88 3.57 -27.88 -0.10 -1.98 16 21 C -0.10 -1.27 2.74 -89.01 -0.24 -1.52 16 22 H 0.11 1.33 7.87 -51.93 -0.41 0.92 16 23 C 0.06 0.77 6.78 37.98 0.26 1.03 16 24 O -0.35 -5.00 11.05 -38.48 -0.43 -5.43 16 25 C 0.48 6.97 8.58 36.31 0.31 7.28 16 26 O -0.47 -8.16 18.00 -18.41 -0.33 -8.49 16 27 C -0.19 -2.14 6.52 -26.79 -0.17 -2.32 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.04 0.80 6.44 -51.93 -0.33 0.46 16 30 H 0.05 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 32 H 0.10 1.75 8.07 -51.93 -0.42 1.33 16 33 H 0.14 1.87 7.99 -52.49 -0.42 1.45 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.35 7.19 -51.93 -0.37 0.98 16 38 H 0.12 1.83 8.00 -51.93 -0.42 1.41 16 39 H 0.12 1.43 7.82 -51.93 -0.41 1.02 16 40 H 0.08 0.97 7.77 -51.93 -0.40 0.56 16 41 H 0.12 1.29 7.80 -51.93 -0.40 0.88 16 42 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -29.78 362.00 -8.06 -37.84 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.62 Total: 4.54 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.41 Total: 3.65 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.21 Total: -42.21 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.68 Total: -23.93 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.78 -8.06 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163131766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.321 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds