Wall clock time and date at job start Tue Mar 31 2020 12:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99619 * 90.00051 * 10 9 7 12 12 C 1.50707 * 109.47188 * 90.00204 * 11 10 9 13 13 C 1.38227 * 119.61875 * 94.72807 * 12 11 10 14 14 C 1.38626 * 119.16180 * 179.75956 * 13 12 11 15 15 C 1.38673 * 118.41783 * 0.50089 * 14 13 12 16 16 C 1.38182 * 119.16395 * 359.73754 * 15 14 13 17 17 N 1.31852 * 119.61598 * 274.99866 * 12 11 10 18 18 C 1.34774 * 120.00261 * 270.00227 * 10 9 7 19 19 O 1.21270 * 120.00172 * 180.02562 * 18 10 9 20 20 C 1.50706 * 119.99638 * 359.97438 * 18 10 9 21 21 C 1.53002 * 109.46771 * 180.02562 * 20 18 10 22 22 H 1.08998 * 110.76715 * 308.51892 * 21 20 18 23 23 C 1.54570 * 110.86921 * 72.27419 * 21 20 18 24 24 O 1.45836 * 104.44185 * 145.01104 * 23 21 20 25 25 C 1.34065 * 109.90760 * 329.39351 * 24 23 21 26 26 O 1.20825 * 125.09148 * 200.82919 * 25 24 23 27 27 C 1.51327 * 109.80850 * 20.83519 * 25 24 23 28 28 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 31 31 H 1.09006 * 109.47349 * 209.99918 * 11 10 9 32 32 H 1.09003 * 109.47665 * 330.00083 * 11 10 9 33 33 H 1.08000 * 120.41578 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.79324 * 180.21257 * 14 13 12 35 35 H 1.08004 * 120.42101 * 179.71364 * 15 14 13 36 36 H 1.08002 * 119.61947 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.46731 * 300.00166 * 20 18 10 38 38 H 1.08993 * 109.47109 * 60.00140 * 20 18 10 39 39 H 1.08996 * 110.43912 * 263.75285 * 23 21 20 40 40 H 1.09005 * 110.44124 * 26.27020 * 23 21 20 41 41 H 1.09003 * 110.36750 * 238.84045 * 27 25 24 42 42 H 1.09002 * 110.36463 * 116.52154 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 1.2682 12 6 1.7624 -5.2837 1.7033 13 6 2.0763 -6.5911 1.3826 14 6 1.2290 -7.6091 1.7919 15 6 0.0870 -7.2715 2.5025 16 6 -0.1638 -5.9417 2.7818 17 7 0.6674 -4.9997 2.3807 18 6 2.6411 -4.1249 -1.1677 19 8 3.4288 -5.0469 -1.1677 20 6 2.1510 -3.5525 -2.4728 21 6 2.7968 -4.3085 -3.6357 22 1 3.8796 -4.3479 -3.5173 23 6 2.2009 -5.7286 -3.7679 24 8 2.1848 -5.9841 -5.2036 25 6 2.0191 -4.8329 -5.8703 26 8 1.6152 -4.7393 -7.0052 27 6 2.4141 -3.6682 -4.9885 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.6886 -4.5594 1.1380 32 1 2.6868 -3.3877 2.0279 33 1 2.9722 -6.8169 0.8233 34 1 1.4505 -8.6400 1.5588 35 1 -0.5980 -8.0383 2.8331 36 1 -1.0513 -5.6705 3.3344 37 1 1.0673 -3.6550 -2.5303 38 1 2.4198 -2.4978 -2.5307 39 1 2.8334 -6.4558 -3.2589 40 1 1.1883 -5.7555 -3.3651 41 1 1.5731 -2.9865 -4.8613 42 1 3.2685 -3.1424 -5.4147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163131766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:18 Heat of formation + Delta-G solvation = -103.321963 kcal Electronic energy + Delta-G solvation = -26738.686607 eV Core-core repulsion = 22876.027505 eV Total energy + Delta-G solvation = -3862.659102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09778 -41.28158 -40.33702 -38.60984 -36.80596 -35.30497 -34.60692 -33.34594 -32.79136 -30.10029 -29.30384 -28.49610 -26.96660 -24.88176 -24.28420 -23.32780 -22.31328 -22.14569 -19.97236 -18.65397 -18.46980 -17.80972 -17.76193 -17.60833 -17.23412 -16.95171 -16.90319 -16.47783 -16.22396 -15.81552 -15.28234 -14.93389 -14.59942 -14.49377 -14.35491 -14.19917 -13.95620 -13.85506 -13.45297 -13.31780 -13.11193 -12.84915 -12.70624 -12.59202 -12.54065 -12.27648 -12.16788 -11.97522 -11.69567 -11.53569 -11.31633 -10.80060 -10.71659 -10.55061 -10.33358 -9.90912 -9.44388 -8.16279 -6.30646 0.17358 0.43172 0.95929 1.44181 1.47372 1.55508 1.78039 2.24567 2.27450 2.46142 2.94717 3.03090 3.14793 3.28523 3.43970 3.61395 3.77513 3.86141 4.03553 4.07784 4.22705 4.28736 4.30238 4.42607 4.53872 4.56878 4.64085 4.65830 4.79233 4.82750 4.91371 4.94405 4.97156 5.14329 5.27180 5.29521 5.31644 5.65895 5.71137 5.81827 5.86313 6.09711 6.34347 6.61078 6.85180 7.16427 7.31131 7.43761 8.89347 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.005915 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.364876 B = 4732.740148 C = 7967.943417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.023 3.977 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.257 3.743 10 N -0.590 5.590 11 C 0.168 3.832 12 C 0.096 3.904 13 C -0.158 4.158 14 C -0.079 4.079 15 C -0.166 4.166 16 C 0.078 3.922 17 N -0.508 5.508 18 C 0.514 3.486 19 O -0.576 6.576 20 C -0.122 4.122 21 C -0.093 4.093 22 H 0.111 0.889 23 C 0.065 3.935 24 O -0.362 6.362 25 C 0.486 3.514 26 O -0.504 6.504 27 C -0.174 4.174 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.016 0.984 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -12.393 0.866 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.136 3.864 10 N -0.319 5.319 11 C 0.044 3.956 12 C -0.042 4.042 13 C -0.178 4.178 14 C -0.105 4.105 15 C -0.186 4.186 16 C -0.079 4.079 17 N -0.218 5.218 18 C 0.304 3.696 19 O -0.458 6.458 20 C -0.162 4.162 21 C -0.112 4.112 22 H 0.129 0.871 23 C -0.008 4.008 24 O -0.279 6.279 25 C 0.329 3.671 26 O -0.391 6.391 27 C -0.212 4.212 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.187 0.813 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.144 0.856 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.641 -12.024 0.478 12.320 hybrid contribution 0.202 0.548 0.193 0.615 sum 2.843 -11.475 0.671 11.841 Atomic orbital electron populations 1.70026 1.07318 1.28017 1.50592 1.25619 0.95428 1.02202 0.94505 0.85619 0.78550 0.79374 0.78513 1.19541 1.21349 1.19610 1.21678 0.93412 0.91389 1.51617 0.92413 1.19038 0.87375 0.82638 0.97313 1.48129 1.45103 1.33970 1.04741 1.20124 0.95676 0.93566 0.86235 1.21661 0.93332 0.94522 0.94724 1.22170 1.02019 0.92992 1.00624 1.21985 0.93161 1.00710 0.94619 1.22503 0.98745 0.97888 0.99424 1.23223 0.98070 0.89666 0.96926 1.67500 1.03922 1.39443 1.10912 1.20793 0.80526 0.82197 0.86088 1.90559 1.36518 1.30622 1.88089 1.21640 1.02014 1.02366 0.90166 1.22174 1.02926 0.93538 0.92567 0.87067 1.24403 1.03236 0.98443 0.74767 1.86987 1.83450 1.34721 1.22733 1.23571 0.72026 0.85297 0.86177 1.90674 1.43009 1.86055 1.19350 1.22984 1.06626 0.97525 0.94036 0.92507 0.95247 0.96578 0.88422 0.90567 0.84201 0.81732 0.81389 0.81264 0.88439 0.87221 0.85743 0.89358 0.85554 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 13.29 21.45 0.28 -49.33 16 2 C 0.02 1.16 5.46 84.65 0.46 1.62 16 3 Si 0.95 40.30 29.54 68.60 2.03 42.32 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -26.62 9.28 25.60 0.24 -26.38 16 8 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.26 11.69 4.97 85.63 0.43 12.11 16 10 N -0.59 -22.52 2.44 -830.47 -2.03 -24.54 16 11 C 0.17 5.96 5.71 85.64 0.49 6.45 16 12 C 0.10 3.15 6.36 42.56 0.27 3.42 16 13 C -0.16 -4.23 9.72 22.36 0.22 -4.01 16 14 C -0.08 -1.62 10.18 22.47 0.23 -1.39 16 15 C -0.17 -3.29 10.11 22.36 0.23 -3.06 16 16 C 0.08 2.05 11.18 84.67 0.95 2.99 16 17 N -0.51 -17.51 10.27 -183.88 -1.89 -19.40 16 18 C 0.51 17.44 7.51 87.66 0.66 18.10 16 19 O -0.58 -19.57 14.64 -3.00 -0.04 -19.62 16 20 C -0.12 -3.47 3.57 29.85 0.11 -3.36 16 21 C -0.09 -2.13 2.74 -9.75 -0.03 -2.15 16 22 H 0.11 2.51 7.87 -2.39 -0.02 2.49 16 23 C 0.06 1.49 6.78 72.52 0.49 1.98 16 24 O -0.36 -9.82 11.05 -50.17 -0.55 -10.37 16 25 C 0.49 13.41 8.58 71.44 0.61 14.02 16 26 O -0.50 -17.34 18.00 21.64 0.39 -16.96 16 27 C -0.17 -3.65 6.52 30.55 0.20 -3.46 16 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.03 1.37 6.44 -2.39 -0.02 1.35 16 30 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 31 H 0.10 3.20 7.32 -2.38 -0.02 3.18 16 32 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16 33 H 0.14 3.62 7.99 -2.91 -0.02 3.59 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.10 2.72 7.19 -2.38 -0.02 2.70 16 38 H 0.11 3.33 8.00 -2.39 -0.02 3.32 16 39 H 0.12 2.75 7.82 -2.39 -0.02 2.73 16 40 H 0.09 1.93 7.77 -2.38 -0.02 1.92 16 41 H 0.13 2.51 7.80 -2.39 -0.02 2.50 16 42 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -64.91 362.00 4.76 -60.14 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.03 Total: 20.87 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 5.55 Total: 16.88 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -3.63 Total: -93.27 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.21 Total: -46.94 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -64.91 4.76 -60.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163131766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.179 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds