Wall clock time and date at job start Tue Mar 31 2020 12:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38230 * 119.61849 * 94.99755 * 12 11 10 14 14 C 1.38624 * 119.16371 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.41799 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16574 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.61681 * 274.73106 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 H 1.08992 * 110.75412 * 57.01355 * 21 20 18 23 23 C 1.54264 * 110.84367 * 293.54462 * 21 20 18 24 24 O 1.45381 * 106.62916 * 226.61770 * 23 21 20 25 25 C 1.34000 * 111.49589 * 357.73239 * 24 23 21 26 26 O 1.20816 * 125.70086 * 199.61649 * 25 24 23 27 27 C 1.51673 * 108.60374 * 19.65043 * 25 24 23 28 28 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 30 30 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 31 31 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 32 32 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 33 33 H 1.07997 * 120.41763 * 359.96204 * 13 12 11 34 34 H 1.07994 * 120.79094 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.42280 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.62108 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 38 38 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 39 39 H 1.08998 * 110.03201 * 345.91291 * 23 21 20 40 40 H 1.08999 * 110.02859 * 107.32733 * 23 21 20 41 41 H 1.08995 * 110.70763 * 213.09061 * 27 25 24 42 42 H 1.09001 * 110.70837 * 89.85196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9515 -2.0021 2.5831 14 6 7.2641 -1.7930 2.9768 15 6 8.2470 -2.6280 2.4671 16 6 7.8879 -3.6338 1.5903 17 7 6.6277 -3.8069 1.2417 18 6 4.2239 -3.2110 -1.1682 19 8 4.6277 -4.3546 -1.1681 20 6 3.9718 -2.5011 -2.4733 21 6 4.3022 -3.4389 -3.6362 22 1 3.7205 -4.3581 -3.5683 23 6 5.8131 -3.7474 -3.6802 24 8 6.2306 -3.5857 -5.0633 25 6 5.1951 -3.2772 -5.8559 26 8 5.1626 -3.4085 -7.0565 27 6 4.0710 -2.7347 -4.9942 28 1 -0.4849 0.8401 0.0004 29 1 3.8753 -0.6805 0.8888 30 1 3.8745 -0.6802 -0.8912 31 1 3.5640 -2.8814 2.0276 32 1 4.0774 -4.3350 1.1377 33 1 5.1605 -1.3705 2.9596 34 1 7.5154 -0.9982 3.6635 35 1 9.2800 -2.4944 2.7524 36 1 8.6474 -4.2886 1.1892 37 1 4.6017 -1.6134 -2.5317 38 1 2.9237 -2.2072 -2.5305 39 1 6.3554 -3.0494 -3.0425 40 1 5.9948 -4.7711 -3.3528 41 1 3.1009 -3.0075 -5.4096 42 1 4.1551 -1.6533 -4.8869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163131891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:23 Heat of formation + Delta-G solvation = -80.735756 kcal Electronic energy + Delta-G solvation = -26826.665152 eV Core-core repulsion = 22964.985461 eV Total energy + Delta-G solvation = -3861.679691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96342 -40.19166 -39.06477 -37.40477 -35.43596 -34.11220 -32.88937 -32.34365 -31.65117 -29.03289 -28.27671 -27.43385 -25.76615 -23.46100 -22.62514 -22.25525 -21.34320 -20.88877 -18.49339 -17.42290 -17.17105 -16.79143 -16.65743 -16.42176 -16.10380 -15.84423 -15.59327 -15.45818 -14.73285 -14.31328 -14.18154 -13.64104 -13.58609 -13.37238 -13.18107 -12.94833 -12.90824 -12.49384 -12.23072 -12.13321 -11.95159 -11.62134 -11.54911 -11.34076 -11.04667 -10.97478 -10.81330 -10.44680 -10.37664 -10.13345 -9.82682 -9.77488 -9.30462 -9.28282 -8.90702 -8.83501 -7.94728 -6.34118 -4.37141 1.13608 1.35808 2.08023 3.06282 3.13956 3.17204 3.20062 3.30838 3.51339 3.98337 4.07796 4.14166 4.33183 4.45498 4.67195 4.81011 4.82969 4.87761 4.96136 5.10255 5.18249 5.25759 5.34824 5.40056 5.56833 5.62366 5.65686 5.69996 5.80270 5.86505 6.08469 6.10376 6.14439 6.20355 6.24513 6.30347 6.50530 6.76154 6.84344 7.13411 7.29833 7.48093 7.96079 8.15821 8.26509 8.69432 8.78879 9.24664 10.78147 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007816 B = 0.005721 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.635848 B = 4893.019554 C = 7560.368781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.585 5.585 11 C 0.168 3.832 12 C 0.119 3.881 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.458 5.458 18 C 0.518 3.482 19 O -0.549 6.549 20 C -0.130 4.130 21 C -0.102 4.102 22 H 0.106 0.894 23 C 0.068 3.932 24 O -0.356 6.356 25 C 0.488 3.512 26 O -0.465 6.465 27 C -0.186 4.186 28 H 0.268 0.732 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -1.973 2.537 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.087 3.913 10 N -0.316 5.316 11 C 0.044 3.956 12 C -0.020 4.020 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.064 4.064 17 N -0.167 5.167 18 C 0.306 3.694 19 O -0.428 6.428 20 C -0.170 4.170 21 C -0.121 4.121 22 H 0.124 0.876 23 C -0.006 4.006 24 O -0.273 6.273 25 C 0.328 3.672 26 O -0.350 6.350 27 C -0.224 4.224 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.140 -3.206 1.352 12.629 hybrid contribution 0.443 2.030 0.937 2.279 sum 12.583 -1.175 2.289 12.843 Atomic orbital electron populations 1.69882 1.06218 1.27337 1.48945 1.24867 0.94687 0.98818 0.94170 0.86980 0.80427 0.84124 0.79025 1.19794 1.20798 1.18941 1.21356 0.88859 0.95086 1.52981 0.90140 1.19848 0.95951 0.77860 0.97632 1.47815 1.63921 1.15823 1.04031 1.20151 0.88764 0.99751 0.86983 1.21906 0.96608 0.91067 0.92444 1.22123 0.97626 0.98994 0.99232 1.21553 0.92879 0.98189 0.98046 1.22112 1.00363 0.97646 0.99976 1.22791 0.93399 0.95884 0.94357 1.67659 1.00353 1.26552 1.22110 1.20344 0.77003 0.86503 0.85503 1.90654 1.46755 1.17793 1.87551 1.21724 1.06213 0.98181 0.90881 1.22244 0.96247 1.00382 0.93257 0.87590 1.24097 0.94780 1.04607 0.77087 1.86747 1.36862 1.81870 1.21808 1.23207 0.82954 0.73757 0.87233 1.90693 1.80225 1.51166 1.12886 1.23179 1.00299 1.03567 0.95351 0.92221 0.94936 0.95258 0.88489 0.88735 0.84566 0.85129 0.85267 0.83168 0.89012 0.86267 0.88995 0.87695 0.86819 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 13.96 55.43 0.77 -23.38 16 2 C 0.08 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 18.32 27.47 -169.99 -4.67 13.65 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 7 C -0.54 -12.93 9.83 -34.44 -0.34 -13.27 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.21 4.07 4.03 -5.19 -0.02 4.05 16 10 N -0.59 -10.59 2.44 -176.43 -0.43 -11.02 16 11 C 0.17 2.79 5.71 -5.20 -0.03 2.76 16 12 C 0.12 1.84 6.36 -82.59 -0.53 1.31 16 13 C -0.16 -2.12 9.72 -39.44 -0.38 -2.51 16 14 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 15 C -0.18 -1.93 10.11 -39.44 -0.40 -2.33 16 16 C 0.09 1.17 11.18 -17.55 -0.20 0.98 16 17 N -0.46 -7.24 10.27 -9.47 -0.10 -7.34 16 18 C 0.52 9.07 7.44 -10.98 -0.08 8.99 16 19 O -0.55 -10.38 14.64 5.56 0.08 -10.30 16 20 C -0.13 -1.90 3.53 -27.88 -0.10 -1.99 16 21 C -0.10 -1.30 2.71 -89.05 -0.24 -1.54 16 22 H 0.11 1.38 8.05 -51.93 -0.42 0.96 16 23 C 0.07 0.89 6.47 37.82 0.24 1.13 16 24 O -0.36 -5.18 10.95 -38.27 -0.42 -5.60 16 25 C 0.49 7.08 8.62 36.48 0.31 7.39 16 26 O -0.47 -8.13 18.00 -18.36 -0.33 -8.46 16 27 C -0.19 -2.15 6.51 -26.50 -0.17 -2.33 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 30 H 0.03 0.55 5.87 -51.93 -0.30 0.25 16 31 H 0.10 1.53 7.97 -51.93 -0.41 1.11 16 32 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 38 H 0.12 1.86 8.00 -51.93 -0.42 1.44 16 39 H 0.09 1.17 7.72 -51.93 -0.40 0.77 16 40 H 0.10 1.39 7.99 -51.93 -0.41 0.97 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.12 1.21 7.91 -51.93 -0.41 0.80 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -30.63 358.54 -7.73 -38.37 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.62 Total: 5.46 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.42 Total: 3.21 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.25 Total: -41.73 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.67 Total: -24.36 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.67 Total: 13.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.63 -7.73 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163131891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.371 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds