Wall clock time and date at job start Tue Mar 31 2020 12:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38230 * 119.61849 * 94.99755 * 12 11 10 14 14 C 1.38624 * 119.16371 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.41799 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16574 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.61681 * 274.73106 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 H 1.08992 * 110.75412 * 57.01355 * 21 20 18 23 23 C 1.54264 * 110.84367 * 293.54462 * 21 20 18 24 24 O 1.45381 * 106.62916 * 226.61770 * 23 21 20 25 25 C 1.34000 * 111.49589 * 357.73239 * 24 23 21 26 26 O 1.20816 * 125.70086 * 199.61649 * 25 24 23 27 27 C 1.51673 * 108.60374 * 19.65043 * 25 24 23 28 28 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 30 30 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 31 31 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 32 32 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 33 33 H 1.07997 * 120.41763 * 359.96204 * 13 12 11 34 34 H 1.07994 * 120.79094 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.42280 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.62108 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 38 38 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 39 39 H 1.08998 * 110.03201 * 345.91291 * 23 21 20 40 40 H 1.08999 * 110.02859 * 107.32733 * 23 21 20 41 41 H 1.08995 * 110.70763 * 213.09061 * 27 25 24 42 42 H 1.09001 * 110.70837 * 89.85196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9515 -2.0021 2.5831 14 6 7.2641 -1.7930 2.9768 15 6 8.2470 -2.6280 2.4671 16 6 7.8879 -3.6338 1.5903 17 7 6.6277 -3.8069 1.2417 18 6 4.2239 -3.2110 -1.1682 19 8 4.6277 -4.3546 -1.1681 20 6 3.9718 -2.5011 -2.4733 21 6 4.3022 -3.4389 -3.6362 22 1 3.7205 -4.3581 -3.5683 23 6 5.8131 -3.7474 -3.6802 24 8 6.2306 -3.5857 -5.0633 25 6 5.1951 -3.2772 -5.8559 26 8 5.1626 -3.4085 -7.0565 27 6 4.0710 -2.7347 -4.9942 28 1 -0.4849 0.8401 0.0004 29 1 3.8753 -0.6805 0.8888 30 1 3.8745 -0.6802 -0.8912 31 1 3.5640 -2.8814 2.0276 32 1 4.0774 -4.3350 1.1377 33 1 5.1605 -1.3705 2.9596 34 1 7.5154 -0.9982 3.6635 35 1 9.2800 -2.4944 2.7524 36 1 8.6474 -4.2886 1.1892 37 1 4.6017 -1.6134 -2.5317 38 1 2.9237 -2.2072 -2.5305 39 1 6.3554 -3.0494 -3.0425 40 1 5.9948 -4.7711 -3.3528 41 1 3.1009 -3.0075 -5.4096 42 1 4.1551 -1.6533 -4.8869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163131891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:22 Heat of formation + Delta-G solvation = -98.661153 kcal Electronic energy + Delta-G solvation = -26827.442456 eV Core-core repulsion = 22964.985461 eV Total energy + Delta-G solvation = -3862.456994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11424 -41.26827 -40.33404 -38.63181 -36.87292 -35.29838 -34.58312 -33.37336 -32.81273 -30.15309 -29.87495 -28.59316 -26.98368 -24.60524 -24.12051 -23.31458 -22.43630 -22.02677 -19.84102 -19.08070 -18.47266 -17.97573 -17.78602 -17.61098 -17.22850 -16.96422 -16.84403 -16.57684 -16.14473 -15.66066 -15.53101 -14.76443 -14.65627 -14.59049 -14.43386 -14.18199 -14.00611 -13.91580 -13.63799 -13.34620 -13.20609 -12.85925 -12.67868 -12.61049 -12.47229 -12.31304 -12.12020 -12.01884 -11.66268 -11.47773 -11.31448 -10.77733 -10.76612 -10.60861 -10.31191 -9.91014 -9.40554 -8.25098 -6.32537 0.17160 0.44184 0.93772 1.43454 1.46213 1.54173 1.82457 2.19874 2.26057 2.38047 2.93421 3.02720 3.09340 3.24632 3.42913 3.56810 3.73322 3.83899 4.00874 4.08109 4.22132 4.28572 4.30237 4.39349 4.50686 4.55996 4.63827 4.66669 4.73266 4.79781 4.84315 4.90370 4.91121 4.95725 5.07310 5.27629 5.31629 5.48072 5.67881 5.74724 5.84980 6.23549 6.33705 6.65083 6.76162 7.17817 7.29314 7.41525 8.90771 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007816 B = 0.005721 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.635848 B = 4893.019554 C = 7560.368781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.023 3.977 3 Si 0.933 3.067 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.034 0.966 9 C 0.218 3.782 10 N -0.591 5.591 11 C 0.168 3.832 12 C 0.097 3.903 13 C -0.168 4.168 14 C -0.077 4.077 15 C -0.167 4.167 16 C 0.079 3.921 17 N -0.495 5.495 18 C 0.510 3.490 19 O -0.567 6.567 20 C -0.124 4.124 21 C -0.095 4.095 22 H 0.100 0.900 23 C 0.074 3.926 24 O -0.366 6.366 25 C 0.488 3.512 26 O -0.500 6.500 27 C -0.171 4.171 28 H 0.267 0.733 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 -0.010 3.177 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.160 1.160 7 C -0.574 4.574 8 H 0.052 0.948 9 C 0.096 3.904 10 N -0.321 5.321 11 C 0.044 3.956 12 C -0.041 4.041 13 C -0.188 4.188 14 C -0.103 4.103 15 C -0.186 4.186 16 C -0.078 4.078 17 N -0.204 5.204 18 C 0.300 3.700 19 O -0.447 6.447 20 C -0.164 4.164 21 C -0.114 4.114 22 H 0.119 0.881 23 C 0.000 4.000 24 O -0.283 6.283 25 C 0.332 3.668 26 O -0.387 6.387 27 C -0.209 4.209 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.958 -1.265 2.011 15.145 hybrid contribution -0.386 1.279 0.822 1.568 sum 14.572 0.014 2.833 14.845 Atomic orbital electron populations 1.70052 1.08424 1.28254 1.51395 1.25714 0.95271 1.02794 0.93823 0.85927 0.79894 0.78793 0.79744 1.18546 1.21765 1.16029 1.21489 0.91118 0.93182 1.51654 0.94779 1.19662 0.92885 0.79011 0.98810 1.47867 1.63912 1.15477 1.04859 1.20096 0.90564 0.98377 0.86547 1.21595 0.95579 0.92672 0.94258 1.22232 0.99141 0.98509 0.98950 1.21965 0.91796 0.98729 0.97826 1.22506 1.02115 0.95938 0.98064 1.23241 0.92659 0.96997 0.94916 1.67550 1.01755 1.27593 1.23547 1.20882 0.76451 0.86460 0.86247 1.90641 1.47555 1.18625 1.87872 1.21704 1.05946 0.98957 0.89746 1.22133 0.96036 1.00002 0.93270 0.88146 1.24071 0.94927 1.04569 0.76418 1.86732 1.37434 1.81746 1.22386 1.23592 0.83420 0.72908 0.86917 1.90675 1.80940 1.52633 1.14439 1.23160 0.99726 1.04493 0.93536 0.92397 0.93864 0.93232 0.88602 0.90746 0.84049 0.81834 0.81557 0.81227 0.86910 0.87234 0.88300 0.88184 0.85396 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.59 13.96 21.45 0.30 -52.29 16 2 C 0.02 1.15 5.47 84.66 0.46 1.61 16 3 Si 0.93 36.38 27.47 68.60 1.88 38.26 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.24 -8.13 6.54 99.48 0.65 -7.48 16 7 C -0.54 -25.72 9.83 25.60 0.25 -25.46 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.22 8.22 4.03 85.63 0.35 8.57 16 10 N -0.59 -21.29 2.44 -830.50 -2.03 -23.32 16 11 C 0.17 5.73 5.71 85.63 0.49 6.22 16 12 C 0.10 2.95 6.36 42.55 0.27 3.22 16 13 C -0.17 -4.13 9.72 22.36 0.22 -3.92 16 14 C -0.08 -1.44 10.18 22.47 0.23 -1.21 16 15 C -0.17 -2.91 10.11 22.36 0.23 -2.68 16 16 C 0.08 1.82 11.18 84.67 0.95 2.77 16 17 N -0.49 -15.28 10.27 -183.88 -1.89 -17.17 16 18 C 0.51 17.76 7.44 87.66 0.65 18.42 16 19 O -0.57 -21.71 14.64 -3.02 -0.04 -21.76 16 20 C -0.12 -3.44 3.53 29.85 0.11 -3.33 16 21 C -0.10 -2.31 2.71 -9.78 -0.03 -2.34 16 22 H 0.10 2.57 8.05 -2.39 -0.02 2.55 16 23 C 0.07 1.83 6.47 72.41 0.47 2.30 16 24 O -0.37 -10.25 10.95 -49.59 -0.54 -10.79 16 25 C 0.49 13.62 8.62 71.55 0.62 14.24 16 26 O -0.50 -17.21 18.00 21.63 0.39 -16.82 16 27 C -0.17 -3.62 6.51 30.74 0.20 -3.42 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.27 16 29 H 0.04 1.57 7.13 -2.39 -0.02 1.55 16 30 H 0.05 1.70 5.87 -2.39 -0.01 1.69 16 31 H 0.10 3.14 7.97 -2.39 -0.02 3.13 16 32 H 0.07 2.76 7.42 -2.39 -0.02 2.75 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.11 2.65 7.36 -2.39 -0.02 2.63 16 38 H 0.11 3.32 8.00 -2.39 -0.02 3.30 16 39 H 0.10 2.35 7.72 -2.39 -0.02 2.33 16 40 H 0.10 2.61 7.99 -2.39 -0.02 2.59 16 41 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.14 2.42 7.91 -2.39 -0.02 2.40 16 Total: -1.00 -68.74 358.54 4.50 -64.23 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.98 Total: 24.67 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.46 Total: 14.98 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -3.62 Total: -92.78 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.20 Total: -49.37 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.88 Total: 38.26 kcal Total: -68.74 4.50 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163131891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.427 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds