Wall clock time and date at job start Tue Mar 31 2020 12:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48504 * 109.47107 * 269.99839 * 3 2 1 5 5 H 1.48491 * 109.47474 * 29.99794 * 3 2 1 6 6 H 1.48504 * 109.47344 * 150.00228 * 3 2 1 7 7 C 1.40051 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99962 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00387 * 6.09285 * 9 7 2 11 11 N 1.34777 * 120.00174 * 186.08842 * 9 7 2 12 12 C 1.46921 * 120.63318 * 174.54390 * 11 9 7 13 13 C 1.53194 * 108.89323 * 233.55898 * 12 11 9 14 14 C 1.53073 * 109.29486 * 305.58238 * 13 12 11 15 15 N 1.46500 * 109.44162 * 181.23915 * 14 13 12 16 16 C 1.34770 * 120.00392 * 84.78850 * 15 14 13 17 17 O 1.21513 * 120.00393 * 0.02562 * 16 15 14 18 18 O 1.34680 * 119.99982 * 179.97438 * 16 15 14 19 19 C 1.35943 * 116.99961 * 185.87185 * 18 16 15 20 20 C 1.38729 * 120.04864 * 249.27946 * 19 18 16 21 21 C 1.38150 * 119.94126 * 179.77152 * 20 19 18 22 22 C 1.38270 * 120.05153 * 0.49933 * 21 20 19 23 23 C 1.38266 * 120.11402 * 359.75746 * 22 21 20 24 24 C 1.38149 * 120.04859 * 359.97438 * 23 22 21 25 25 C 1.53039 * 109.66265 * 61.15057 * 14 13 12 26 26 C 1.46929 * 120.62754 * 354.56590 * 11 9 7 27 27 H 0.96997 * 119.99901 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58860 * 353.41583 * 12 11 9 29 29 H 1.09002 * 109.58969 * 113.70335 * 12 11 9 30 30 H 1.09004 * 109.49765 * 65.38715 * 13 12 11 31 31 H 1.08993 * 109.49915 * 185.48367 * 13 12 11 32 32 H 1.09005 * 109.34648 * 301.12459 * 14 13 12 33 33 H 0.97010 * 119.99505 * 264.78952 * 15 14 13 34 34 H 1.07996 * 120.03124 * 0.02562 * 20 19 18 35 35 H 1.07993 * 119.97494 * 180.25350 * 21 20 19 36 36 H 1.08000 * 119.94548 * 179.71928 * 22 21 20 37 37 H 1.07992 * 119.97929 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.02310 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.49550 * 178.75051 * 25 14 13 40 40 H 1.08996 * 109.52499 * 58.67029 * 25 14 13 41 41 H 1.08994 * 109.58739 * 246.15687 * 26 11 9 42 42 H 1.09005 * 109.58915 * 6.43838 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0633 -2.4835 -0.1119 11 7 1.9433 -3.6445 0.1227 12 6 1.2167 -4.9156 0.2443 13 6 1.7091 -5.6509 1.4947 14 6 3.2314 -5.7974 1.4287 15 7 3.7027 -6.5263 2.6089 16 6 3.6983 -7.8740 2.6149 17 8 3.3038 -8.4847 1.6412 18 8 4.1321 -8.5440 3.6996 19 6 4.2172 -9.8968 3.5963 20 6 3.3426 -10.7043 4.3088 21 6 3.4280 -12.0788 4.1985 22 6 4.3907 -12.6498 3.3867 23 6 5.2670 -11.8472 2.6797 24 6 5.1820 -10.4722 2.7825 25 6 3.8810 -4.4122 1.3919 26 6 3.4124 -3.6662 0.1386 27 1 -0.4850 0.8400 -0.0004 28 1 0.1483 -4.7187 0.3332 29 1 1.4031 -5.5289 -0.6374 30 1 1.4388 -5.0796 2.3828 31 1 1.2481 -6.6374 1.5419 32 1 3.5023 -6.3496 0.5288 33 1 4.0180 -6.0388 3.3861 34 1 2.5931 -10.2589 4.9460 35 1 2.7448 -12.7078 4.7497 36 1 4.4589 -13.7246 3.3053 37 1 6.0178 -12.2955 2.0460 38 1 5.8669 -9.8457 2.2303 39 1 4.9654 -4.5195 1.3673 40 1 3.5910 -3.8502 2.2796 41 1 3.7799 -4.1785 -0.7505 42 1 3.7928 -2.6448 0.1552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169889673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:48 Heat of formation + Delta-G solvation = -76.821645 kcal Electronic energy + Delta-G solvation = -25947.977348 eV Core-core repulsion = 22086.467386 eV Total energy + Delta-G solvation = -3861.509962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39714 -39.37805 -38.47893 -37.08085 -35.94626 -34.09130 -32.57020 -31.31791 -31.03496 -30.63380 -29.92978 -26.45202 -24.78245 -23.19227 -22.98450 -22.78021 -21.21917 -20.71816 -19.40006 -18.63372 -17.90884 -16.82550 -16.68799 -16.56215 -15.93380 -15.32377 -14.92133 -14.67226 -14.47380 -14.21781 -14.08459 -13.93374 -13.78612 -13.56489 -13.11022 -12.85500 -12.48076 -12.20495 -11.96165 -11.86410 -11.67380 -11.45435 -11.17968 -11.00095 -10.99482 -10.83056 -10.76288 -10.69324 -10.43439 -10.26729 -9.95173 -9.30704 -9.17920 -8.99570 -8.89653 -7.62450 -7.30486 -6.23889 -4.69145 0.75480 1.03257 2.13756 2.64974 3.10818 3.17862 3.20355 3.44449 4.04145 4.09049 4.49772 4.52575 4.56967 4.59149 4.77139 4.86590 5.03883 5.07208 5.17093 5.27853 5.33762 5.54237 5.63669 5.67588 5.74852 5.79612 5.91858 5.97838 6.05392 6.06622 6.14283 6.16584 6.25270 6.35211 6.41660 6.42243 6.55114 6.68982 6.73351 7.29289 7.41330 7.56194 8.08191 8.24083 8.29577 8.97898 9.38176 10.53291 10.71710 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.002331 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.305818 B =12007.752450 C =12293.955165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.576 6.576 11 N -0.644 5.644 12 C 0.124 3.876 13 C -0.142 4.142 14 C 0.164 3.836 15 N -0.698 5.698 16 C 0.642 3.358 17 O -0.554 6.554 18 O -0.310 6.310 19 C 0.108 3.892 20 C -0.118 4.118 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.121 4.121 25 C -0.141 4.141 26 C 0.126 3.874 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.406 0.594 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.174 -18.922 8.589 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.459 6.459 11 N -0.382 5.382 12 C 0.000 4.000 13 C -0.182 4.182 14 C 0.062 3.938 15 N -0.355 5.355 16 C 0.395 3.605 17 O -0.440 6.440 18 O -0.223 6.223 19 C 0.066 3.934 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.180 4.180 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.241 0.759 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.090 -19.142 8.035 23.536 hybrid contribution 0.699 0.936 0.455 1.254 sum 11.789 -18.206 8.490 23.292 Atomic orbital electron populations 1.70010 1.07082 1.27365 1.35143 1.25735 0.94617 1.00324 0.92592 0.86391 0.80127 0.81474 0.78892 1.19697 1.20479 1.18884 1.20960 0.93526 0.89220 1.54442 0.90859 1.18259 0.86896 0.82157 0.76130 1.90598 1.14563 1.86040 1.54692 1.48252 1.04516 1.06180 1.79287 1.21071 0.98811 0.85700 0.94456 1.22363 0.94423 1.00801 1.00617 1.21169 0.94519 0.91918 0.86209 1.45027 1.67898 1.01944 1.20654 1.18426 0.77499 0.83511 0.81080 1.91042 1.51265 1.67633 1.34067 1.84290 1.79711 1.18568 1.39687 1.18311 0.96288 0.79476 0.99312 1.21144 0.97820 0.93708 1.00945 1.21031 0.98643 0.93838 0.98913 1.21247 0.95550 1.00199 0.96892 1.21029 0.99396 0.92663 0.99230 1.21350 0.98363 0.95940 0.98300 1.22293 0.99822 0.94120 1.01765 1.21377 0.82859 1.01553 0.94091 0.92040 0.89408 0.93697 0.91412 0.91400 0.89179 0.75896 0.85043 0.85105 0.85483 0.85274 0.85509 0.91014 0.90648 0.93615 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.59 11.85 55.55 0.66 -21.93 16 2 C 0.09 2.37 5.50 -17.36 -0.10 2.27 16 3 Si 0.91 19.51 29.56 -169.99 -5.02 14.49 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.54 -14.73 8.88 -35.63 -0.32 -15.05 16 8 H 0.07 1.78 5.64 -52.48 -0.30 1.48 16 9 C 0.56 15.53 7.61 -12.99 -0.10 15.43 16 10 O -0.58 -18.43 14.48 5.20 0.08 -18.35 16 11 N -0.64 -14.11 2.97 -174.43 -0.52 -14.63 16 12 C 0.12 2.44 6.41 -3.71 -0.02 2.41 16 13 C -0.14 -2.32 5.66 -26.59 -0.15 -2.47 16 14 C 0.16 2.32 2.41 -67.87 -0.16 2.15 16 15 N -0.70 -8.66 5.08 -58.66 -0.30 -8.96 16 16 C 0.64 9.16 8.49 54.05 0.46 9.62 16 17 O -0.55 -9.60 15.48 -19.28 -0.30 -9.90 16 18 O -0.31 -4.00 10.09 -24.76 -0.25 -4.25 16 19 C 0.11 1.32 5.26 -39.22 -0.21 1.11 16 20 C -0.12 -1.22 9.99 -39.43 -0.39 -1.61 16 21 C -0.11 -0.89 10.04 -39.60 -0.40 -1.28 16 22 C -0.12 -0.95 10.04 -39.56 -0.40 -1.35 16 23 C -0.11 -0.92 10.04 -39.60 -0.40 -1.32 16 24 C -0.12 -1.33 9.37 -39.44 -0.37 -1.70 16 25 C -0.14 -1.92 5.55 -26.61 -0.15 -2.06 16 26 C 0.13 2.17 6.35 -3.71 -0.02 2.15 16 27 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 28 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 33 H 0.41 4.05 8.71 -40.82 -0.36 3.69 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.82 5.30 -51.93 -0.28 1.54 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -35.47 354.14 -8.51 -43.99 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.47 Total: 5.90 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.72 Total: 8.30 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.16 Total: -45.52 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.47 Total: -32.50 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.47 -8.51 -43.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169889673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.833 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds