Wall clock time and date at job start Tue Mar 31 2020 12:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48504 * 109.47107 * 269.99839 * 3 2 1 5 5 H 1.48491 * 109.47474 * 29.99794 * 3 2 1 6 6 H 1.48504 * 109.47344 * 150.00228 * 3 2 1 7 7 C 1.40051 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99962 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00387 * 6.09285 * 9 7 2 11 11 N 1.34777 * 120.00174 * 186.08842 * 9 7 2 12 12 C 1.46921 * 120.63318 * 174.54390 * 11 9 7 13 13 C 1.53194 * 108.89323 * 233.55898 * 12 11 9 14 14 C 1.53073 * 109.29486 * 305.58238 * 13 12 11 15 15 N 1.46500 * 109.44162 * 181.23915 * 14 13 12 16 16 C 1.34770 * 120.00392 * 84.78850 * 15 14 13 17 17 O 1.21513 * 120.00393 * 0.02562 * 16 15 14 18 18 O 1.34680 * 119.99982 * 179.97438 * 16 15 14 19 19 C 1.35943 * 116.99961 * 185.87185 * 18 16 15 20 20 C 1.38729 * 120.04864 * 249.27946 * 19 18 16 21 21 C 1.38150 * 119.94126 * 179.77152 * 20 19 18 22 22 C 1.38270 * 120.05153 * 0.49933 * 21 20 19 23 23 C 1.38266 * 120.11402 * 359.75746 * 22 21 20 24 24 C 1.38149 * 120.04859 * 359.97438 * 23 22 21 25 25 C 1.53039 * 109.66265 * 61.15057 * 14 13 12 26 26 C 1.46929 * 120.62754 * 354.56590 * 11 9 7 27 27 H 0.96997 * 119.99901 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58860 * 353.41583 * 12 11 9 29 29 H 1.09002 * 109.58969 * 113.70335 * 12 11 9 30 30 H 1.09004 * 109.49765 * 65.38715 * 13 12 11 31 31 H 1.08993 * 109.49915 * 185.48367 * 13 12 11 32 32 H 1.09005 * 109.34648 * 301.12459 * 14 13 12 33 33 H 0.97010 * 119.99505 * 264.78952 * 15 14 13 34 34 H 1.07996 * 120.03124 * 0.02562 * 20 19 18 35 35 H 1.07993 * 119.97494 * 180.25350 * 21 20 19 36 36 H 1.08000 * 119.94548 * 179.71928 * 22 21 20 37 37 H 1.07992 * 119.97929 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.02310 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.49550 * 178.75051 * 25 14 13 40 40 H 1.08996 * 109.52499 * 58.67029 * 25 14 13 41 41 H 1.08994 * 109.58739 * 246.15687 * 26 11 9 42 42 H 1.09005 * 109.58915 * 6.43838 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0633 -2.4835 -0.1119 11 7 1.9433 -3.6445 0.1227 12 6 1.2167 -4.9156 0.2443 13 6 1.7091 -5.6509 1.4947 14 6 3.2314 -5.7974 1.4287 15 7 3.7027 -6.5263 2.6089 16 6 3.6983 -7.8740 2.6149 17 8 3.3038 -8.4847 1.6412 18 8 4.1321 -8.5440 3.6996 19 6 4.2172 -9.8968 3.5963 20 6 3.3426 -10.7043 4.3088 21 6 3.4280 -12.0788 4.1985 22 6 4.3907 -12.6498 3.3867 23 6 5.2670 -11.8472 2.6797 24 6 5.1820 -10.4722 2.7825 25 6 3.8810 -4.4122 1.3919 26 6 3.4124 -3.6662 0.1386 27 1 -0.4850 0.8400 -0.0004 28 1 0.1483 -4.7187 0.3332 29 1 1.4031 -5.5289 -0.6374 30 1 1.4388 -5.0796 2.3828 31 1 1.2481 -6.6374 1.5419 32 1 3.5023 -6.3496 0.5288 33 1 4.0180 -6.0388 3.3861 34 1 2.5931 -10.2589 4.9460 35 1 2.7448 -12.7078 4.7497 36 1 4.4589 -13.7246 3.3053 37 1 6.0178 -12.2955 2.0460 38 1 5.8669 -9.8457 2.2303 39 1 4.9654 -4.5195 1.3673 40 1 3.5910 -3.8502 2.2796 41 1 3.7799 -4.1785 -0.7505 42 1 3.7928 -2.6448 0.1552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169889673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:47 Heat of formation + Delta-G solvation = -101.167477 kcal Electronic energy + Delta-G solvation = -25949.033063 eV Core-core repulsion = 22086.467386 eV Total energy + Delta-G solvation = -3862.565677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38739 -40.60809 -39.69415 -38.36851 -37.40683 -35.57146 -34.63162 -32.45206 -32.00719 -31.95962 -30.88718 -28.43154 -26.10381 -24.33248 -24.16789 -23.73191 -22.36814 -22.02645 -20.87468 -19.92391 -18.87308 -18.45828 -17.87084 -17.68578 -17.33471 -16.61138 -16.24074 -15.90383 -15.84783 -15.58118 -15.43408 -15.04801 -14.90219 -14.56517 -14.44938 -14.27024 -13.67387 -13.54127 -13.37003 -13.11570 -12.95832 -12.83586 -12.68825 -12.60246 -12.48059 -12.17886 -11.98323 -11.96611 -11.87505 -11.72695 -11.53141 -10.91414 -10.36822 -10.00470 -9.77796 -9.74063 -9.13189 -8.27155 -6.81448 -0.03423 0.33568 1.17663 1.42785 1.43992 1.54601 1.59006 2.25278 2.48209 2.70507 2.82159 3.16191 3.60712 3.67463 3.79568 3.89354 3.91050 4.11335 4.17108 4.19225 4.32473 4.37983 4.43628 4.49707 4.52431 4.66048 4.80784 4.86914 4.90432 4.96037 4.98619 5.05811 5.17632 5.28119 5.33192 5.35654 5.42946 5.46916 5.48918 5.77818 5.96444 6.16593 6.27643 6.39113 6.90408 7.19671 7.43814 8.48590 8.69466 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.002331 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.305818 B =12007.752450 C =12293.955165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.565 4.565 8 H 0.101 0.899 9 C 0.541 3.459 10 O -0.635 6.635 11 N -0.645 5.645 12 C 0.125 3.875 13 C -0.129 4.129 14 C 0.175 3.825 15 N -0.683 5.683 16 C 0.643 3.357 17 O -0.587 6.587 18 O -0.306 6.306 19 C 0.070 3.930 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.127 4.127 26 C 0.119 3.881 27 H 0.273 0.727 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.421 0.579 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.225 -19.956 9.423 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.601 4.601 8 H 0.118 0.882 9 C 0.347 3.653 10 O -0.523 6.523 11 N -0.382 5.382 12 C 0.000 4.000 13 C -0.169 4.169 14 C 0.072 3.928 15 N -0.342 5.342 16 C 0.396 3.604 17 O -0.476 6.476 18 O -0.218 6.218 19 C 0.028 3.972 20 C -0.151 4.151 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.157 4.157 25 C -0.166 4.166 26 C -0.004 4.004 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.258 0.742 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.218 -20.222 8.911 26.277 hybrid contribution -0.256 1.056 0.194 1.104 sum 13.962 -19.166 9.105 25.400 Atomic orbital electron populations 1.70204 1.09678 1.28840 1.36771 1.27026 0.95456 1.05073 0.91253 0.85046 0.79018 0.75123 0.79315 1.18910 1.20272 1.16495 1.21511 0.94976 0.89418 1.54205 0.88171 1.18721 0.86513 0.84202 0.75869 1.90548 1.17057 1.87391 1.57273 1.48109 1.06716 1.05331 1.78031 1.21088 0.96845 0.85317 0.96737 1.22191 0.96467 0.99933 0.98314 1.20915 0.92612 0.92493 0.86801 1.44762 1.67281 1.01480 1.20683 1.18556 0.77003 0.83773 0.81032 1.91013 1.52748 1.68432 1.35447 1.84304 1.79376 1.19413 1.38710 1.18721 0.98002 0.79130 1.01313 1.21392 0.97850 0.94752 1.01094 1.21436 0.99020 0.93231 0.98761 1.21698 0.94365 1.01853 0.95460 1.21397 1.00058 0.91868 0.99378 1.21509 0.98449 0.97170 0.98581 1.22160 1.01956 0.92790 0.99651 1.21634 0.79659 1.02258 0.96884 0.91742 0.93008 0.92454 0.92185 0.91346 0.89532 0.74191 0.84551 0.82295 0.82234 0.82855 0.85818 0.87070 0.90789 0.91652 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.31 11.85 21.84 0.26 -50.05 16 2 C 0.03 1.46 5.50 85.30 0.47 1.93 16 3 Si 1.00 39.71 29.56 68.60 2.03 41.74 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 7 C -0.56 -30.76 8.88 24.83 0.22 -30.54 16 8 H 0.10 4.72 5.64 -2.91 -0.02 4.71 16 9 C 0.54 31.03 7.61 86.36 0.66 31.68 16 10 O -0.64 -42.93 14.48 -4.32 -0.06 -43.00 16 11 N -0.65 -28.68 2.97 -823.99 -2.45 -31.13 16 12 C 0.12 5.04 6.41 86.36 0.55 5.60 16 13 C -0.13 -4.23 5.66 30.68 0.17 -4.05 16 14 C 0.17 4.66 2.41 45.03 0.11 4.77 16 15 N -0.68 -15.86 5.08 -569.89 -2.90 -18.75 16 16 C 0.64 17.87 8.49 129.79 1.10 18.97 16 17 O -0.59 -20.20 15.48 19.80 0.31 -19.89 16 18 O -0.31 -7.77 10.09 0.18 0.00 -7.76 16 19 C 0.07 1.68 5.26 22.50 0.12 1.80 16 20 C -0.13 -2.62 9.99 22.37 0.22 -2.40 16 21 C -0.11 -1.53 10.04 22.26 0.22 -1.31 16 22 C -0.12 -1.49 10.04 22.28 0.22 -1.26 16 23 C -0.11 -1.69 10.04 22.26 0.22 -1.47 16 24 C -0.14 -2.94 9.37 22.36 0.21 -2.73 16 25 C -0.13 -3.12 5.55 30.67 0.17 -2.95 16 26 C 0.12 3.90 6.35 86.36 0.55 4.45 16 27 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 28 H 0.05 2.45 7.04 -2.39 -0.02 2.44 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 2.46 7.58 -2.38 -0.02 2.45 16 33 H 0.42 7.46 8.71 -92.70 -0.81 6.65 16 34 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.10 3.26 5.30 -2.38 -0.01 3.25 16 Total: -1.00 -82.07 354.14 2.66 -79.41 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.25 Total: 26.96 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 5.23 Total: 22.48 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -5.09 Total: -99.94 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: 0.25 Total: -70.66 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -82.07 2.66 -79.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169889673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.756 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds