Wall clock time and date at job start Tue Mar 31 2020 11:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47166 * 270.00235 * 3 2 1 5 5 H 1.48501 * 109.46770 * 30.00107 * 3 2 1 6 6 H 1.48502 * 109.46841 * 150.00094 * 3 2 1 7 7 C 1.37883 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99578 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46739 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46859 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99863 * 180.02562 * 12 11 10 14 14 O 1.21550 * 119.99922 * 359.97438 * 13 12 11 15 15 C 1.47853 * 119.99844 * 180.02562 * 13 12 11 16 16 C 1.39618 * 120.11397 * 359.97173 * 15 13 12 17 17 C 1.37980 * 119.99615 * 180.02562 * 16 15 13 18 18 C 1.38250 * 120.22007 * 359.75122 * 17 16 15 19 19 C 1.38938 * 120.22908 * 0.50706 * 18 17 16 20 20 N 1.39983 * 120.00365 * 179.76706 * 19 18 17 21 21 C 1.47093 * 125.55627 * 359.72538 * 20 19 18 22 22 C 1.54086 * 103.90691 * 180.02562 * 21 20 19 23 23 O 1.45703 * 104.01320 * 359.92488 * 22 21 20 24 24 C 1.33788 * 109.46968 * 0.02562 * 23 22 21 25 25 O 1.21511 * 123.06846 * 179.97438 * 24 23 22 26 26 C 1.38630 * 119.99916 * 359.49315 * 19 18 17 27 27 H 0.96995 * 120.00190 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47511 * 59.99622 * 9 7 2 29 29 H 1.08997 * 109.47098 * 299.99175 * 9 7 2 30 30 H 1.09001 * 109.46842 * 60.00143 * 10 9 7 31 31 H 1.08997 * 109.46851 * 299.99617 * 10 9 7 32 32 H 1.09001 * 109.47497 * 59.99969 * 11 10 9 33 33 H 1.08997 * 109.47189 * 299.99475 * 11 10 9 34 34 H 0.96995 * 119.99877 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.00074 * 0.02562 * 16 15 13 36 36 H 1.08004 * 119.88697 * 179.97438 * 17 16 15 37 37 H 1.08002 * 119.88625 * 180.25161 * 18 17 16 38 38 H 1.09002 * 110.56672 * 61.43056 * 21 20 19 39 39 H 1.08999 * 110.56403 * 298.72128 * 21 20 19 40 40 H 1.09006 * 110.52133 * 118.55897 * 22 21 20 41 41 H 1.08999 * 110.51984 * 241.29270 * 22 21 20 42 42 H 1.07998 * 120.11340 * 180.23768 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 7 6.0400 -4.0178 0.0004 13 6 7.3650 -4.2640 0.0009 14 8 8.1549 -3.3401 0.0006 15 6 7.8579 -5.6580 0.0009 16 6 6.9527 -6.7210 0.0008 17 6 7.4154 -8.0209 0.0013 18 6 8.7741 -8.2759 -0.0034 19 6 9.6831 -7.2252 0.0021 20 7 11.0579 -7.4888 0.0022 21 6 11.6725 -8.8252 0.0028 22 6 13.1861 -8.5367 0.0034 23 8 13.2680 -7.0820 0.0013 24 6 12.0336 -6.5659 0.0003 25 8 11.8148 -5.3706 -0.0011 26 6 9.2286 -5.9155 0.0016 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6586 -3.1502 -0.8903 31 1 3.6579 -3.1505 0.8897 32 1 5.9150 -2.1227 0.8899 33 1 5.9149 -2.1227 -0.8901 34 1 5.4097 -4.7550 0.0003 35 1 5.8905 -6.5258 0.0004 36 1 6.7136 -8.8419 0.0017 37 1 9.1303 -9.2955 -0.0071 38 1 11.3892 -9.3774 -0.8933 39 1 11.3869 -9.3776 0.8979 40 1 13.6524 -8.9444 0.9004 41 1 13.6537 -8.9470 -0.8917 42 1 9.9335 -5.0973 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:27 Heat of formation + Delta-G solvation = -75.267040 kcal Electronic energy + Delta-G solvation = -25164.458224 eV Core-core repulsion = 21303.015675 eV Total energy + Delta-G solvation = -3861.442549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38838 -40.22445 -38.70198 -37.76156 -35.96712 -35.53549 -33.35272 -31.84592 -31.47307 -30.96275 -29.53980 -27.28255 -25.11282 -24.22932 -23.68157 -22.28777 -21.60246 -20.69955 -19.99690 -18.65096 -18.02756 -17.54143 -17.24000 -16.70901 -16.27915 -15.95728 -15.40256 -15.37622 -15.01988 -14.77848 -14.57592 -14.41917 -14.17791 -13.99528 -13.93738 -13.56970 -13.05057 -12.86422 -12.69210 -12.27466 -12.13180 -11.98804 -11.88015 -11.32827 -11.05964 -10.89689 -10.84566 -10.61829 -10.21896 -9.96991 -9.77613 -9.59515 -9.35076 -9.21574 -8.84085 -8.54133 -8.50111 -6.05178 -4.03800 0.52134 0.94333 1.68484 2.17843 2.77257 2.82770 3.26253 3.33292 3.39959 3.40797 3.45660 3.65867 3.92145 3.97374 4.43532 4.46082 4.47568 4.51844 4.66503 4.73438 4.78991 4.87850 5.02250 5.19048 5.29068 5.50219 5.59876 5.67790 5.84823 5.91356 5.98477 6.03478 6.09128 6.35274 6.46127 6.54088 6.70774 6.76651 6.80325 7.24428 7.37901 7.43529 7.62321 7.77770 8.31052 8.51387 8.98485 9.57220 11.07968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.002087 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.818281 B =13413.340398 C =14283.664684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.719 5.719 13 C 0.550 3.450 14 O -0.531 6.531 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.135 4.135 19 C 0.171 3.829 20 N -0.572 5.572 21 C 0.059 3.941 22 C 0.042 3.958 23 O -0.319 6.319 24 C 0.640 3.360 25 O -0.487 6.487 26 C -0.098 4.098 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.447 -27.206 0.033 36.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.371 5.371 13 C 0.336 3.664 14 O -0.409 6.409 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.114 4.114 18 C -0.156 4.156 19 C 0.079 3.921 20 N -0.310 5.310 21 C -0.063 4.063 22 C -0.033 4.033 23 O -0.229 6.229 24 C 0.395 3.605 25 O -0.370 6.370 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 25.055 -25.632 0.036 35.843 hybrid contribution -0.056 0.196 -0.023 0.205 sum 24.999 -25.435 0.013 35.664 Atomic orbital electron populations 1.69910 1.06304 1.26949 1.51039 1.25031 0.94759 0.99252 0.94468 0.86776 0.80428 0.83500 0.78612 1.20236 1.21379 1.18862 1.21092 0.89297 0.94497 1.51074 0.91002 1.19510 0.97264 0.91458 0.96740 1.21713 0.90532 1.01119 1.01759 1.21707 0.96168 0.80827 1.02214 1.46073 1.06301 1.10205 1.74471 1.18201 0.82766 0.88248 0.77215 1.90808 1.55339 1.45468 1.49243 1.19918 0.93443 0.93535 1.03157 1.21395 0.99735 0.92239 0.99405 1.20873 0.94507 0.96839 0.99208 1.20837 0.92896 0.97554 1.04276 1.17222 0.79227 0.94120 1.01537 1.45404 1.04646 1.07416 1.73498 1.22980 0.92489 0.85284 1.05575 1.24368 0.95426 0.77450 1.06084 1.87367 1.26024 1.22439 1.87039 1.18601 0.79400 0.85820 0.76675 1.91057 1.81166 1.12095 1.52653 1.21691 0.95986 0.96365 0.97786 0.92712 0.96252 0.96679 0.92067 0.92035 0.91537 0.91535 0.76594 0.84943 0.84544 0.85264 0.88038 0.88009 0.86997 0.86994 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.11 -2.13 5.27 -26.72 -0.14 -2.27 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.72 -10.41 5.51 -61.24 -0.34 -10.75 16 13 C 0.55 8.83 7.77 -12.33 -0.10 8.73 16 14 O -0.53 -10.79 16.34 5.32 0.09 -10.70 16 15 C -0.10 -1.25 5.87 -104.99 -0.62 -1.86 16 16 C -0.11 -0.99 9.54 -39.16 -0.37 -1.37 16 17 C -0.10 -0.66 10.02 -39.67 -0.40 -1.06 16 18 C -0.13 -0.92 9.49 -39.32 -0.37 -1.29 16 19 C 0.17 1.70 6.63 -83.73 -0.56 1.14 16 20 N -0.57 -4.82 3.17 -118.21 -0.38 -5.19 16 21 C 0.06 0.15 6.47 -3.15 -0.02 0.13 16 22 C 0.04 0.09 8.23 37.72 0.31 0.40 16 23 O -0.32 -2.77 11.09 -37.88 -0.42 -3.19 16 24 C 0.64 7.38 8.78 53.85 0.47 7.85 16 25 O -0.49 -7.91 14.77 -19.12 -0.28 -8.19 16 26 C -0.10 -1.31 8.86 -38.98 -0.35 -1.66 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 29 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 4.52 6.50 -40.82 -0.27 4.25 16 35 H 0.13 0.95 6.40 -52.49 -0.34 0.62 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.44 7.29 -52.49 -0.38 0.06 16 38 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 42 H 0.17 2.84 4.85 -52.49 -0.25 2.58 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -38.59 354.14 -7.98 -46.57 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.40 Total: -1.17 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.70 Total: -2.97 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.06 Total: -43.01 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.62 Total: -22.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.59 -7.98 -46.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -38.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds