Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47166 * 270.00235 * 3 2 1 5 5 H 1.48501 * 109.46770 * 30.00107 * 3 2 1 6 6 H 1.48502 * 109.46841 * 150.00094 * 3 2 1 7 7 C 1.37883 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99578 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46739 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46859 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99863 * 180.02562 * 12 11 10 14 14 O 1.21550 * 119.99922 * 359.97438 * 13 12 11 15 15 C 1.47853 * 119.99844 * 180.02562 * 13 12 11 16 16 C 1.39618 * 120.11397 * 359.97173 * 15 13 12 17 17 C 1.37980 * 119.99615 * 180.02562 * 16 15 13 18 18 C 1.38250 * 120.22007 * 359.75122 * 17 16 15 19 19 C 1.38938 * 120.22908 * 0.50706 * 18 17 16 20 20 N 1.39983 * 120.00365 * 179.76706 * 19 18 17 21 21 C 1.47093 * 125.55627 * 359.72538 * 20 19 18 22 22 C 1.54086 * 103.90691 * 180.02562 * 21 20 19 23 23 O 1.45703 * 104.01320 * 359.92488 * 22 21 20 24 24 C 1.33788 * 109.46968 * 0.02562 * 23 22 21 25 25 O 1.21511 * 123.06846 * 179.97438 * 24 23 22 26 26 C 1.38630 * 119.99916 * 359.49315 * 19 18 17 27 27 H 0.96995 * 120.00190 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47511 * 59.99622 * 9 7 2 29 29 H 1.08997 * 109.47098 * 299.99175 * 9 7 2 30 30 H 1.09001 * 109.46842 * 60.00143 * 10 9 7 31 31 H 1.08997 * 109.46851 * 299.99617 * 10 9 7 32 32 H 1.09001 * 109.47497 * 59.99969 * 11 10 9 33 33 H 1.08997 * 109.47189 * 299.99475 * 11 10 9 34 34 H 0.96995 * 119.99877 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.00074 * 0.02562 * 16 15 13 36 36 H 1.08004 * 119.88697 * 179.97438 * 17 16 15 37 37 H 1.08002 * 119.88625 * 180.25161 * 18 17 16 38 38 H 1.09002 * 110.56672 * 61.43056 * 21 20 19 39 39 H 1.08999 * 110.56403 * 298.72128 * 21 20 19 40 40 H 1.09006 * 110.52133 * 118.55897 * 22 21 20 41 41 H 1.08999 * 110.51984 * 241.29270 * 22 21 20 42 42 H 1.07998 * 120.11340 * 180.23768 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 7 6.0400 -4.0178 0.0004 13 6 7.3650 -4.2640 0.0009 14 8 8.1549 -3.3401 0.0006 15 6 7.8579 -5.6580 0.0009 16 6 6.9527 -6.7210 0.0008 17 6 7.4154 -8.0209 0.0013 18 6 8.7741 -8.2759 -0.0034 19 6 9.6831 -7.2252 0.0021 20 7 11.0579 -7.4888 0.0022 21 6 11.6725 -8.8252 0.0028 22 6 13.1861 -8.5367 0.0034 23 8 13.2680 -7.0820 0.0013 24 6 12.0336 -6.5659 0.0003 25 8 11.8148 -5.3706 -0.0011 26 6 9.2286 -5.9155 0.0016 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6586 -3.1502 -0.8903 31 1 3.6579 -3.1505 0.8897 32 1 5.9150 -2.1227 0.8899 33 1 5.9149 -2.1227 -0.8901 34 1 5.4097 -4.7550 0.0003 35 1 5.8905 -6.5258 0.0004 36 1 6.7136 -8.8419 0.0017 37 1 9.1303 -9.2955 -0.0071 38 1 11.3892 -9.3774 -0.8933 39 1 11.3869 -9.3776 0.8979 40 1 13.6524 -8.9444 0.9004 41 1 13.6537 -8.9470 -0.8917 42 1 9.9335 -5.0973 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171501555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = -104.120093 kcal Electronic energy + Delta-G solvation = -25165.709386 eV Core-core repulsion = 21303.015675 eV Total energy + Delta-G solvation = -3862.693712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.99406 -41.24765 -39.63138 -38.60757 -37.06831 -36.61081 -35.20233 -33.46548 -32.19871 -31.83124 -30.09365 -28.97326 -25.88626 -25.08561 -24.60950 -23.53812 -22.38177 -22.17395 -21.17009 -19.54884 -18.93432 -18.52501 -18.17098 -17.93978 -17.29043 -16.87043 -16.78630 -16.40040 -16.10041 -15.57827 -15.56760 -15.22109 -15.19578 -14.94836 -14.81791 -14.71489 -14.58661 -13.86045 -13.76603 -13.41888 -13.34151 -12.94114 -12.86047 -12.74125 -12.67344 -11.96344 -11.94151 -11.80420 -11.61425 -11.49784 -11.34122 -11.29351 -11.06930 -10.76513 -10.29268 -9.98515 -9.16653 -8.29850 -6.33111 -0.26613 0.19731 1.10560 1.35748 1.37604 1.39698 1.49264 1.83377 2.06485 2.35545 2.41938 2.81270 3.05811 3.21732 3.38686 3.66911 3.93964 3.97324 4.02599 4.09731 4.16285 4.17355 4.29461 4.41537 4.47701 4.51114 4.68367 4.69431 4.85073 4.85870 4.88007 5.03262 5.20975 5.26086 5.28725 5.33089 5.35834 5.47042 5.54369 5.64360 5.84981 6.14991 6.27052 6.47749 6.68932 6.74498 7.12506 7.31505 8.86259 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.002087 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.818281 B =13413.340398 C =14283.664684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.528 4.528 8 H 0.042 0.958 9 C -0.014 4.014 10 C -0.098 4.098 11 C 0.124 3.876 12 N -0.705 5.705 13 C 0.546 3.454 14 O -0.588 6.588 15 C -0.122 4.122 16 C -0.103 4.103 17 C -0.083 4.083 18 C -0.107 4.107 19 C 0.161 3.839 20 N -0.569 5.569 21 C 0.054 3.946 22 C 0.033 3.967 23 O -0.339 6.339 24 C 0.632 3.368 25 O -0.556 6.556 26 C -0.133 4.133 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.153 0.847 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.192 -31.539 0.012 40.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.060 0.940 9 C -0.052 4.052 10 C -0.136 4.136 11 C 0.001 3.999 12 N -0.357 5.357 13 C 0.334 3.666 14 O -0.469 6.469 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.128 4.128 19 C 0.069 3.931 20 N -0.306 5.306 21 C -0.065 4.065 22 C -0.040 4.040 23 O -0.249 6.249 24 C 0.388 3.612 25 O -0.443 6.443 26 C -0.155 4.155 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.171 0.829 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 25.800 -30.072 0.014 39.623 hybrid contribution -0.270 1.311 -0.017 1.339 sum 25.530 -28.760 -0.003 38.457 Atomic orbital electron populations 1.70044 1.08052 1.28078 1.52684 1.25940 0.95590 1.03248 0.94325 0.85745 0.79472 0.78842 0.79139 1.19317 1.20908 1.17501 1.21440 0.91687 0.93369 1.50132 0.94010 1.19482 0.94290 0.94680 0.96740 1.21483 0.91304 0.98249 1.02575 1.21379 0.94893 0.82288 1.01390 1.45834 1.06343 1.09691 1.73878 1.18827 0.82483 0.89465 0.75793 1.90770 1.56694 1.47525 1.51950 1.19664 0.93907 0.92394 1.06610 1.21677 1.00035 0.92324 0.98240 1.21429 0.95351 0.96718 0.96604 1.21380 0.92209 0.98621 1.00549 1.17384 0.80510 0.93501 1.01729 1.45532 1.03769 1.09173 1.72131 1.23515 0.91819 0.82577 1.08632 1.24958 0.96180 0.73867 1.08963 1.87324 1.24672 1.26337 1.86541 1.18913 0.80584 0.85587 0.76133 1.91016 1.82437 1.15215 1.55615 1.21478 0.95743 0.97377 1.00875 0.92504 0.96247 0.96338 0.91232 0.91249 0.92542 0.92457 0.74525 0.82924 0.80058 0.80330 0.84935 0.84909 0.84301 0.84289 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.35 5.47 84.66 0.46 0.82 16 3 Si 0.94 45.35 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 7 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.54 16 9 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 10 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 11 C 0.12 4.28 5.67 86.38 0.49 4.77 16 12 N -0.71 -20.42 5.51 -465.95 -2.57 -22.98 16 13 C 0.55 18.45 7.77 86.79 0.67 19.13 16 14 O -0.59 -26.02 16.34 -3.87 -0.06 -26.08 16 15 C -0.12 -3.21 5.87 -20.10 -0.12 -3.33 16 16 C -0.10 -1.62 9.54 22.54 0.21 -1.40 16 17 C -0.08 -0.71 10.02 22.21 0.22 -0.49 16 18 C -0.11 -0.93 9.49 22.44 0.21 -0.71 16 19 C 0.16 2.99 6.63 38.10 0.25 3.24 16 20 N -0.57 -8.85 3.17 -759.28 -2.41 -11.26 16 21 C 0.05 0.04 6.47 86.63 0.56 0.60 16 22 C 0.03 0.05 8.23 72.35 0.60 0.64 16 23 O -0.34 -5.90 11.09 -47.47 -0.53 -6.43 16 24 C 0.63 15.47 8.78 129.86 1.14 16.61 16 25 O -0.56 -20.42 14.77 19.65 0.29 -20.13 16 26 C -0.13 -3.84 8.86 22.66 0.20 -3.64 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 29 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.42 8.84 6.50 -92.71 -0.60 8.24 16 35 H 0.15 1.66 6.40 -2.91 -0.02 1.64 16 36 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 37 H 0.18 -0.19 7.29 -2.91 -0.02 -0.21 16 38 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.14 -0.57 8.14 -2.38 -0.02 -0.59 16 41 H 0.14 -0.58 8.14 -2.39 -0.02 -0.59 16 42 H 0.12 4.78 4.85 -2.91 -0.01 4.77 16 Total: -1.00 -94.41 354.14 2.75 -91.66 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.40 Total: 4.84 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.44 Total: 2.29 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -4.68 Total: -93.38 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.30 Total: -52.64 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -94.41 2.75 -91.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.460 kcal (2) G-P(sol) polarization free energy of solvation -94.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds