Wall clock time and date at job start Tue Mar 31 2020 11:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99661 * 2 1 4 4 H 1.48497 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46996 * 299.99788 * 3 2 1 6 6 H 1.48497 * 109.46965 * 59.99777 * 3 2 1 7 7 C 1.37872 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00578 * 172.87058 * 7 2 1 9 9 C 1.50705 * 119.99861 * 352.87078 * 7 2 1 10 10 C 1.53009 * 115.54669 * 294.79411 * 9 7 2 11 11 O 1.45200 * 109.46799 * 273.17896 * 10 9 7 12 12 C 1.34225 * 116.99658 * 183.64461 * 11 10 9 13 13 O 1.20819 * 120.00410 * 3.79712 * 12 11 10 14 14 C 1.50705 * 120.00157 * 183.79269 * 12 11 10 15 15 C 1.50703 * 112.84593 * 65.87002 * 14 12 11 16 16 C 1.38261 * 119.98956 * 294.08625 * 15 14 12 17 17 C 1.38224 * 120.05089 * 179.97438 * 16 15 14 18 18 C 1.38215 * 120.02788 * 0.02562 * 17 16 15 19 19 C 1.38443 * 119.97395 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.02587 * 180.02562 * 19 18 17 21 21 C 1.38180 * 119.98410 * 113.81498 * 15 14 12 22 22 C 1.53777 * 113.61441 * 294.67833 * 14 12 11 23 23 C 1.54047 * 86.98555 * 270.83757 * 22 14 12 24 24 C 1.53778 * 113.61928 * 197.06855 * 14 12 11 25 25 C 1.52999 * 117.51767 * 80.49047 * 9 7 2 26 26 C 1.53001 * 117.50007 * 149.12426 * 9 7 2 27 27 H 0.96997 * 120.00495 * 5.03194 * 1 2 3 28 28 H 1.08999 * 109.47105 * 33.17914 * 10 9 7 29 29 H 1.08993 * 109.46954 * 153.18483 * 10 9 7 30 30 H 1.08000 * 119.97986 * 0.02562 * 16 15 14 31 31 H 1.08002 * 119.98482 * 179.97438 * 17 16 15 32 32 H 1.08006 * 120.01776 * 180.02562 * 18 17 16 33 33 H 1.07996 * 120.01182 * 359.97438 * 21 15 14 34 34 H 1.09003 * 113.61820 * 25.42928 * 22 14 12 35 35 H 1.08995 * 113.61545 * 156.33116 * 22 14 12 36 36 H 1.09004 * 113.61864 * 220.02387 * 23 22 14 37 37 H 1.08995 * 113.69582 * 89.12836 * 23 22 14 38 38 H 1.08996 * 113.61796 * 203.66335 * 24 14 12 39 39 H 1.09005 * 113.60988 * 334.48715 * 24 14 12 40 40 H 1.08999 * 117.49595 * 214.97275 * 25 9 7 41 41 H 1.08996 * 117.49564 * 359.97438 * 25 9 7 42 42 H 1.08996 * 117.49663 * 359.97438 * 26 9 7 43 43 H 1.08993 * 117.49666 * 144.97420 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0784 -1.1976 -0.1155 9 6 1.2599 -2.4940 0.1631 10 6 0.5691 -2.6944 1.5136 11 8 1.5079 -3.2768 2.4557 12 6 1.0358 -3.5874 3.6732 13 8 -0.1379 -3.4436 3.9208 14 6 1.9699 -4.1156 4.7314 15 6 2.9938 -3.0997 5.1681 16 6 3.9565 -2.6621 4.2775 17 6 4.8959 -1.7299 4.6764 18 6 4.8742 -1.2346 5.9666 19 6 3.9106 -1.6720 6.8593 20 9 3.8881 -1.1882 8.1205 21 6 2.9666 -2.6018 6.4567 22 6 2.5712 -5.4896 4.3920 23 6 1.3451 -6.1080 5.0900 24 6 1.2485 -4.8052 5.9014 25 6 0.5734 -3.0750 -1.0747 26 6 1.8409 -3.7316 -0.5238 27 1 -0.4851 0.8367 -0.0737 28 1 0.2247 -1.7319 1.8918 29 1 -0.2832 -3.3623 1.3901 30 1 3.9742 -3.0482 3.2690 31 1 5.6478 -1.3891 3.9800 32 1 5.6080 -0.5059 6.2781 33 1 2.2115 -2.9402 7.1508 34 1 2.6160 -5.6946 3.3224 35 1 3.5127 -5.6923 4.9025 36 1 1.5823 -6.9828 5.6955 37 1 0.4980 -6.2715 4.4239 38 1 1.8289 -4.8212 6.8238 39 1 0.2264 -4.4569 6.0503 40 1 -0.3704 -3.5999 -0.9269 41 1 0.6599 -2.5166 -2.0067 42 1 2.7614 -3.6054 -1.0936 43 1 1.7312 -4.6884 -0.0134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174751975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:20 Heat of formation + Delta-G solvation = -74.763714 kcal Electronic energy + Delta-G solvation = -27148.062058 eV Core-core repulsion = 23266.721373 eV Total energy + Delta-G solvation = -3881.340685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91700 -42.28490 -40.29194 -38.94068 -38.14285 -36.90252 -34.11940 -32.40956 -31.56955 -29.12781 -27.70300 -26.90673 -26.76489 -23.73296 -23.53150 -22.99204 -22.53883 -21.17694 -20.19637 -18.99981 -18.51329 -17.86928 -17.48246 -17.27754 -17.10953 -16.84647 -16.60544 -16.58857 -15.97008 -15.61144 -15.26428 -14.90552 -14.70802 -14.39868 -13.98026 -13.84232 -13.60949 -13.46491 -13.35864 -13.00110 -12.89906 -12.86313 -12.71576 -12.44904 -12.37529 -12.09898 -12.02045 -11.73243 -11.62498 -11.52691 -11.40697 -11.22581 -10.84924 -10.55585 -10.15084 -9.96247 -9.65876 -8.16846 -6.27143 0.07210 0.19856 1.14128 1.37589 1.41629 1.51598 1.70179 2.38815 2.60115 3.05670 3.08933 3.29704 3.42823 3.50720 3.56397 3.74468 3.82340 3.94393 4.08297 4.11334 4.24721 4.34617 4.38533 4.42341 4.48425 4.67573 4.71464 4.77334 4.82216 4.86902 4.95289 4.98537 5.00859 5.04583 5.06974 5.11189 5.16393 5.33910 5.38042 5.44986 5.48645 5.55130 5.63926 5.74939 5.89599 6.32157 6.74815 6.77942 7.40338 8.91598 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.005219 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.339804 B = 5363.566650 C = 6974.093469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.288 1.288 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.010 3.990 10 C 0.131 3.869 11 O -0.339 6.339 12 C 0.477 3.523 13 O -0.544 6.544 14 C -0.051 4.051 15 C -0.054 4.054 16 C -0.114 4.114 17 C -0.090 4.090 18 C -0.149 4.149 19 C 0.080 3.920 20 F -0.145 7.145 21 C -0.148 4.148 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.167 4.167 26 C -0.165 4.165 27 H 0.261 0.739 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -9.972 12.253 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.009 3.991 10 C 0.058 3.942 11 O -0.254 6.254 12 C 0.322 3.678 13 O -0.434 6.434 14 C -0.052 4.052 15 C -0.054 4.054 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.168 4.168 19 C 0.061 3.939 20 F -0.124 7.124 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.173 4.173 24 C -0.154 4.154 25 C -0.204 4.204 26 C -0.202 4.202 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.151 0.849 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.152 -9.778 12.376 18.236 hybrid contribution -0.561 1.571 -0.174 1.677 sum 8.592 -8.207 12.201 17.031 Atomic orbital electron populations 1.70067 1.07295 1.27572 1.50111 1.25721 0.95522 1.02201 0.94349 0.85651 0.79767 0.79859 0.77404 1.18198 1.20463 1.21381 1.20758 0.93318 0.89666 1.49956 0.91977 1.18858 0.99849 0.93167 0.87189 1.22489 0.88879 0.94851 0.88026 1.86489 1.44379 1.71953 1.22579 1.23546 0.87675 0.73636 0.82991 1.90592 1.19924 1.51675 1.81241 1.20668 0.94302 0.95664 0.94547 1.19128 0.95547 0.97280 0.93461 1.21388 0.94455 0.97375 1.00014 1.21312 0.98778 0.95212 0.95480 1.21462 0.99475 1.02147 0.93718 1.17759 0.98472 0.97597 0.80076 1.91478 1.96253 1.86874 1.37758 1.21126 0.99842 0.98388 0.97252 1.23105 0.99826 0.88779 1.02570 1.22900 0.97434 0.97963 0.99043 1.23115 1.01054 0.95086 0.96159 1.22728 0.95166 1.03732 0.98822 1.22825 0.96800 0.96265 1.04268 0.92966 0.93870 0.94354 0.84868 0.82618 0.82543 0.83299 0.90522 0.85879 0.87344 0.91605 0.85698 0.91312 0.90835 0.90776 0.89205 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 12.60 21.44 0.27 -52.08 16 2 C 0.02 1.21 5.22 84.65 0.44 1.65 16 3 Si 0.95 42.84 29.55 68.60 2.03 44.87 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.50 -26.58 8.82 25.60 0.23 -26.36 16 8 H 0.06 3.24 7.82 -2.91 -0.02 3.22 16 9 C 0.01 0.48 1.57 -52.92 -0.08 0.40 16 10 C 0.13 6.41 5.36 71.99 0.39 6.79 16 11 O -0.34 -14.34 9.38 -51.37 -0.48 -14.82 16 12 C 0.48 18.36 6.50 71.24 0.46 18.82 16 13 O -0.54 -24.18 15.63 21.98 0.34 -23.84 16 14 C -0.05 -1.39 1.03 -53.15 -0.05 -1.45 16 15 C -0.05 -1.46 4.87 -19.87 -0.10 -1.55 16 16 C -0.11 -3.12 9.20 22.27 0.20 -2.91 16 17 C -0.09 -2.11 10.04 22.26 0.22 -1.89 16 18 C -0.15 -3.35 10.03 22.31 0.22 -3.12 16 19 C 0.08 1.99 7.30 22.38 0.16 2.15 16 20 F -0.14 -3.64 17.27 44.97 0.78 -2.86 16 21 C -0.15 -3.69 9.03 22.31 0.20 -3.49 16 22 C -0.11 -2.17 7.12 31.21 0.22 -1.95 16 23 C -0.14 -2.61 7.81 31.21 0.24 -2.37 16 24 C -0.12 -2.57 6.18 31.12 0.19 -2.38 16 25 C -0.17 -7.49 9.88 30.60 0.30 -7.18 16 26 C -0.16 -6.64 9.85 30.60 0.30 -6.34 16 27 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 28 H 0.04 2.43 7.26 -2.39 -0.02 2.42 16 29 H 0.04 1.85 7.77 -2.39 -0.02 1.83 16 30 H 0.13 3.84 7.64 -2.91 -0.02 3.82 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.15 3.22 6.43 -2.91 -0.02 3.21 16 34 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 35 H 0.12 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 2.00 6.81 -2.39 -0.02 1.99 16 39 H 0.07 1.79 7.35 -2.38 -0.02 1.77 16 40 H 0.07 3.12 8.04 -2.39 -0.02 3.11 16 41 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -64.77 366.00 7.51 -57.25 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.01 Total: 22.67 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.56 Total: -31.19 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.27 Total: -52.08 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.14 Total: -38.66 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.77 7.51 -57.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174751975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.509 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds