Wall clock time and date at job start Tue Mar 31 2020 13:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34686 * 125.66967 * 2 1 4 4 C 1.40987 * 107.02579 * 179.74258 * 3 2 1 5 5 C 1.35887 * 106.74132 * 0.40962 * 4 3 2 6 6 C 1.47907 * 125.92653 * 179.85221 * 5 4 3 7 7 C 1.40850 * 126.23277 * 179.97438 * 6 5 4 8 8 C 1.38213 * 105.28441 * 180.12673 * 7 6 5 9 9 C 1.47056 * 126.75666 * 179.91779 * 8 7 6 10 10 O 1.21543 * 120.00023 * 359.71468 * 9 8 7 11 11 O 1.34806 * 120.00018 * 179.71255 * 9 8 7 12 12 C 1.45200 * 117.00151 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99754 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99917 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 N 1.36725 * 106.48313 * 359.66082 * 8 7 6 25 25 H 0.97008 * 125.03775 * 180.26065 * 24 8 7 26 26 N 1.28416 * 109.91900 * 0.21959 * 24 8 7 27 27 O 1.34342 * 125.66822 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 299.97781 * 1 2 3 30 30 H 1.08997 * 109.46754 * 59.97732 * 1 2 3 31 31 H 1.08002 * 126.49027 * 0.03345 * 3 2 1 32 32 H 1.07996 * 126.63378 * 180.29603 * 4 3 2 33 33 H 1.08004 * 127.36080 * 0.05304 * 7 6 5 34 34 H 1.08993 * 109.47475 * 60.00230 * 12 11 9 35 35 H 1.09000 * 109.47147 * 300.00023 * 12 11 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 39 39 H 1.09000 * 109.47140 * 60.00051 * 15 13 12 40 40 H 1.09001 * 109.47230 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.47375 * 300.00034 * 15 13 12 42 42 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0942 0.0000 4 6 3.6283 0.6435 0.0061 5 6 3.5832 -0.7146 0.0001 6 6 4.7515 -1.6217 0.0002 7 6 4.7123 -3.0297 -0.0054 8 6 6.0348 -3.4310 0.0001 9 6 6.5348 -4.8140 -0.0009 10 8 5.7516 -5.7434 -0.0017 11 8 7.8619 -5.0509 -0.0008 12 6 8.2835 -6.4404 -0.0024 13 6 9.8120 -6.5096 -0.0014 14 6 10.3549 -5.8105 -1.2494 15 6 10.3532 -5.8138 1.2490 16 6 10.2495 -7.9516 -0.0024 17 1 9.5112 -8.7399 -0.0032 18 6 11.5922 -8.2648 -0.0024 19 7 12.4912 -7.3048 -0.0009 20 14 12.1345 -10.0522 -0.0028 21 1 11.6086 -10.7288 -1.2157 22 1 13.6180 -10.1195 -0.0021 23 1 11.6082 -10.7296 1.2094 24 7 6.7867 -2.2891 0.0007 25 1 7.7564 -2.2608 0.0005 26 7 6.0190 -1.2597 0.0007 27 8 2.2904 -1.0914 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 1.9615 2.1223 0.0005 32 1 4.5159 1.2586 0.0122 33 1 3.8359 -3.6609 -0.0113 34 1 7.8976 -6.9362 -0.8930 35 1 7.8970 -6.9383 0.8869 36 1 10.0384 -4.7675 -1.2482 37 1 11.4438 -5.8602 -1.2490 38 1 9.9692 -6.3063 -2.1402 39 1 9.9664 -6.3118 2.1381 40 1 11.4421 -5.8634 1.2499 41 1 10.0368 -4.7707 1.2502 42 1 13.4358 -7.5250 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184803651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:13 Heat of formation + Delta-G solvation = -6.764172 kcal Electronic energy + Delta-G solvation = -25478.856713 eV Core-core repulsion = 21620.384671 eV Total energy + Delta-G solvation = -3858.472042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.97341 -42.47743 -39.85160 -36.74783 -35.01090 -33.46415 -33.35102 -31.51246 -31.33913 -30.94572 -26.91111 -26.15768 -25.73206 -25.28456 -23.78880 -22.46590 -21.82542 -20.79078 -20.17339 -19.05264 -18.86923 -16.92768 -16.61432 -16.47430 -16.19805 -15.97169 -15.57510 -15.26702 -14.86492 -14.59890 -13.91981 -13.51141 -13.36957 -13.35753 -13.11467 -13.06294 -13.03688 -12.83446 -12.16076 -12.00919 -11.63394 -11.37216 -11.18084 -11.03484 -10.80751 -10.52831 -10.51720 -10.50149 -10.23038 -10.05747 -9.92980 -9.56251 -9.45225 -9.42828 -8.87166 -8.44783 -8.17659 -6.09418 -4.21395 0.90905 1.06275 2.12991 2.15926 2.68436 2.82693 2.98030 3.02507 3.25283 3.30073 3.33513 4.15127 4.32344 4.57950 4.60459 4.73452 4.80609 5.02962 5.10165 5.17284 5.23065 5.30582 5.39296 5.61104 5.75380 5.85558 5.90736 5.97081 6.04737 6.28299 6.33021 6.56051 6.62688 6.81985 6.86728 6.91961 7.00459 7.00617 7.28417 7.51305 7.58532 7.62415 7.91531 7.95186 8.08145 8.29308 8.78047 9.44569 10.91836 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.041322 B = 0.002184 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.438866 B =12818.103982 C =13299.179375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.212 4.212 4 C -0.169 4.169 5 C 0.065 3.935 6 C 0.089 3.911 7 C -0.132 4.132 8 C -0.004 4.004 9 C 0.529 3.471 10 O -0.494 6.494 11 O -0.349 6.349 12 C 0.086 3.914 13 C 0.070 3.930 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.349 5.349 25 H 0.461 0.539 26 N -0.236 5.236 27 O -0.165 6.165 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.085 0.915 41 H 0.014 0.986 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 15.867 -0.001 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.231 4.231 4 C -0.191 4.191 5 C 0.014 3.986 6 C -0.065 4.065 7 C -0.160 4.160 8 C -0.130 4.130 9 C 0.371 3.629 10 O -0.381 6.381 11 O -0.264 6.264 12 C 0.013 3.987 13 C 0.070 3.930 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.552 4.552 17 H 0.076 0.924 18 C -0.133 4.133 19 N -0.520 5.520 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 N -0.068 5.068 25 H 0.309 0.691 26 N -0.074 5.074 27 O -0.061 6.061 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.104 0.896 41 H 0.033 0.967 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.100 16.116 0.002 23.498 hybrid contribution 0.417 -1.653 -0.001 1.705 sum -16.683 14.464 0.001 22.080 Atomic orbital electron populations 1.20337 0.84805 1.04254 1.03648 1.22536 0.93964 0.83842 1.05389 1.21509 0.92494 0.99526 1.09555 1.21779 0.98371 0.92991 1.05915 1.18484 0.80468 0.91074 1.08584 1.18586 0.88604 0.90389 1.08962 1.22172 0.95672 0.93807 1.04340 1.20790 0.91743 0.86708 1.13781 1.19630 0.82553 0.86691 0.74046 1.90881 1.57769 1.43787 1.45629 1.86566 1.21810 1.35525 1.82534 1.23834 0.99191 0.74480 1.01146 1.18277 0.84763 0.96157 0.93816 1.21785 1.04482 0.95611 0.96900 1.21786 1.04478 0.95613 0.96898 1.20865 0.92026 0.90245 1.52038 0.92433 1.24860 0.96452 0.97476 0.94561 1.69807 1.01083 1.31321 1.49770 0.86571 0.77431 0.84777 0.78732 1.20196 1.21186 1.20200 1.43737 1.10500 1.01582 1.50964 0.69142 1.73342 1.01459 1.13731 1.18831 1.83981 1.15385 1.34951 1.71741 0.90402 0.89521 0.89516 0.83108 0.82768 0.80967 0.91997 0.92001 0.96678 0.89584 0.95668 0.95668 0.89587 0.96681 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.41 36.01 0.37 0.00 16 2 C -0.01 -0.06 7.32 -35.56 -0.26 -0.32 16 3 C -0.21 -1.92 10.78 -39.80 -0.43 -2.35 16 4 C -0.17 -1.84 10.82 -39.38 -0.43 -2.27 16 5 C 0.07 0.81 7.19 -36.47 -0.26 0.55 16 6 C 0.09 1.19 7.09 -82.93 -0.59 0.60 16 7 C -0.13 -1.81 10.81 -38.60 -0.42 -2.23 16 8 C 0.00 -0.06 7.19 -82.12 -0.59 -0.65 16 9 C 0.53 9.13 7.95 34.31 0.27 9.40 16 10 O -0.49 -9.61 16.70 -19.30 -0.32 -9.94 16 11 O -0.35 -6.44 8.89 -40.78 -0.36 -6.80 16 12 C 0.09 1.80 4.27 37.16 0.16 1.96 16 13 C 0.07 1.64 0.58 -155.66 -0.09 1.55 16 14 C -0.13 -2.98 8.11 37.16 0.30 -2.68 16 15 C -0.13 -2.98 8.11 37.16 0.30 -2.68 16 16 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 19 N -0.88 -23.28 9.35 55.43 0.52 -22.76 16 20 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 N -0.35 -4.39 6.92 33.44 0.23 -4.16 16 25 H 0.46 4.79 8.96 -190.46 -1.71 3.08 16 26 N -0.24 -3.09 12.15 33.34 0.41 -2.68 16 27 O -0.16 -1.96 10.67 4.62 0.05 -1.91 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.01 0.30 7.68 -51.93 -0.40 -0.10 16 37 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 41 H 0.01 0.30 7.68 -51.93 -0.40 -0.10 16 42 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -29.15 363.02 -7.96 -37.11 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.90 Total: 1.25 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.02 Total: -10.95 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 1.16 Total: -29.60 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.64 Total: -18.65 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.15 -7.96 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184803651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.347 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds